BLASTX nr result

ID: Coptis23_contig00002405 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00002405
         (228 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002310617.1| predicted protein [Populus trichocarpa] gi|2...    65   8e-09
ref|XP_002307139.1| predicted protein [Populus trichocarpa] gi|2...    61   8e-08
ref|XP_003524284.1| PREDICTED: uncharacterized protein LOC100811...    57   1e-06
ref|XP_002275681.2| PREDICTED: uncharacterized protein LOC100247...    55   5e-06
emb|CBI21533.3| unnamed protein product [Vitis vinifera]               55   5e-06

>ref|XP_002310617.1| predicted protein [Populus trichocarpa] gi|222853520|gb|EEE91067.1|
           predicted protein [Populus trichocarpa]
          Length = 920

 Score = 64.7 bits (156), Expect = 8e-09
 Identities = 38/78 (48%), Positives = 45/78 (57%), Gaps = 3/78 (3%)
 Frame = -1

Query: 225 SFSSSK*TTLRWLSSLDNIPSTSGSVEDVP---SLESTSPRYEDCSLISDVKSLAWGHYG 55
           +FSS   T        D+IP TS SV+D     SLE    R  +   + DV SLAWG  G
Sbjct: 82  AFSSESWTEPSRSDLKDDIPYTSASVKDFDNGFSLEHEFSRSNNSRFVCDVNSLAWGVCG 141

Query: 54  DAYDQHKDVSFREFLFVS 1
           D Y+QHK+ SFREFLFVS
Sbjct: 142 DTYNQHKEASFREFLFVS 159


>ref|XP_002307139.1| predicted protein [Populus trichocarpa] gi|222856588|gb|EEE94135.1|
           predicted protein [Populus trichocarpa]
          Length = 814

 Score = 61.2 bits (147), Expect = 8e-08
 Identities = 33/62 (53%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
 Frame = -1

Query: 177 DNIPSTSGSVEDVP---SLESTSPRYEDCSLISDVKSLAWGHYGDAYDQHKDVSFREFLF 7
           D+IP +S SV D     SLE+   R  +   + DV SLAWG  GD Y+QHK+ SFREFLF
Sbjct: 93  DDIPCSSASVGDFDNGFSLENGFLRSNNYGFVHDVNSLAWGVCGDTYNQHKEASFREFLF 152

Query: 6   VS 1
           VS
Sbjct: 153 VS 154


>ref|XP_003524284.1| PREDICTED: uncharacterized protein LOC100811665 [Glycine max]
          Length = 3260

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 30/62 (48%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
 Frame = -1

Query: 180 LDNIPSTSGSVEDVPS--LESTSPRYEDCSLISDVKSLAWGHYGDAYDQHKDVSFREFLF 7
           +++ P TSGS  D+ +        +   C  ISDV SLAW H  D YDQH D SFRE LF
Sbjct: 139 VNDSPCTSGSDTDIDTDLAGIKCSKSNSCPYISDVNSLAWAHCEDGYDQHNDASFREVLF 198

Query: 6   VS 1
           VS
Sbjct: 199 VS 200


>ref|XP_002275681.2| PREDICTED: uncharacterized protein LOC100247348 [Vitis vinifera]
          Length = 3288

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 31/65 (47%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
 Frame = -1

Query: 183 SLDNIPSTSGSVEDVPS----LESTSPRYEDCSLISDVKSLAWGHYGDAYDQHKDVSFRE 16
           S +N+P TSGSV  V       E+   +      + DV SLAWG  GD Y+QHKD  FRE
Sbjct: 122 SRENMPCTSGSVTVVSDNDFLCENNLSKCSGYPFVCDVNSLAWGVCGDNYNQHKDTFFRE 181

Query: 15  FLFVS 1
            LFVS
Sbjct: 182 LLFVS 186


>emb|CBI21533.3| unnamed protein product [Vitis vinifera]
          Length = 668

 Score = 55.5 bits (132), Expect = 5e-06
 Identities = 31/65 (47%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
 Frame = -1

Query: 183 SLDNIPSTSGSVEDVPS----LESTSPRYEDCSLISDVKSLAWGHYGDAYDQHKDVSFRE 16
           S +N+P TSGSV  V       E+   +      + DV SLAWG  GD Y+QHKD  FRE
Sbjct: 82  SRENMPCTSGSVTVVSDNDFLCENNLSKCSGYPFVCDVNSLAWGVCGDNYNQHKDTFFRE 141

Query: 15  FLFVS 1
            LFVS
Sbjct: 142 LLFVS 146


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