BLASTX nr result
ID: Coptis23_contig00002384
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00002384
(2070 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002313525.1| predicted protein [Populus trichocarpa] gi|2... 738 0.0
ref|XP_002277357.2| PREDICTED: ruBisCO large subunit-binding pro... 731 0.0
ref|XP_002328161.1| predicted protein [Populus trichocarpa] gi|2... 727 0.0
ref|XP_003538152.1| PREDICTED: ruBisCO large subunit-binding pro... 728 0.0
ref|XP_003539777.1| PREDICTED: ruBisCO large subunit-binding pro... 727 0.0
>ref|XP_002313525.1| predicted protein [Populus trichocarpa] gi|222849933|gb|EEE87480.1|
predicted protein [Populus trichocarpa]
Length = 586
Score = 738 bits (1904), Expect(2) = 0.0
Identities = 392/452 (86%), Positives = 414/452 (91%)
Frame = +2
Query: 293 TASVLAREIIKLGLLSVTSGANPVSIKKGIDKTIQGLVAELEKKARSIEGRDDVKAVATI 472
TASVLAREIIKLGLLSVTSGANPVSIKKGIDKT+QGLV ELEK+AR ++GRDD+KAVATI
Sbjct: 135 TASVLAREIIKLGLLSVTSGANPVSIKKGIDKTVQGLVEELEKRARPVKGRDDIKAVATI 194
Query: 473 SAGNDEDIGIMIADAIDKVGADGVLSIESSSSFETTVDVEEGMEIDRGYISPQFVTNPEK 652
SAGNDE IG MIADAIDKVG DGVLSIESSSSFETTV+VEEGMEIDRGYISPQFVTNPEK
Sbjct: 195 SAGNDELIGTMIADAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEK 254
Query: 653 LIAEFENAKVLVTDQKISSIKDIIPLLEKTTQLRSPLLIIAEDVTGEALATLVVNKLRGI 832
LI FENA+VLVTDQKIS+IKDIIPLLEKTTQLRSPLLIIAEDVTGEALATLVVNKLRGI
Sbjct: 255 LICVFENARVLVTDQKISAIKDIIPLLEKTTQLRSPLLIIAEDVTGEALATLVVNKLRGI 314
Query: 833 INVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGLMIENTEVEQLGIARKVTISKDST 1012
+NV+AIKAPGFGERRKA+LQDIAILTGAEFQASDLGL IENT +EQLG+ARKVTISKDST
Sbjct: 315 LNVSAIKAPGFGERRKAMLQDIAILTGAEFQASDLGLSIENTSIEQLGLARKVTISKDST 374
Query: 1013 TIIADAASKDEIHARIAQIKRELSETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELE 1192
TIIADAASKDE+ ARIAQ+K+ELSETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELE
Sbjct: 375 TIIADAASKDELQARIAQLKKELSETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELE 434
Query: 1193 DRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSMFVPAIKEKFDDADERLGADIVQKALV 1372
DRKLRIEDAKNATFAAIEEGIVPGGGAALVHLS VPAIKEK DADERLGADIVQKALV
Sbjct: 435 DRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTHVPAIKEKIKDADERLGADIVQKALV 494
Query: 1373 APASLIAHNXXXXXXXXXXXXXXXXWEIGYNAMTDKYENLIQSGVIDPAKVTRCALQNAA 1552
APASLIA N WE+GYNAMTDKYENL+++GVIDPAKVTRCALQN+A
Sbjct: 495 APASLIAQNAGIEGEVVVEKLKESEWEMGYNAMTDKYENLVEAGVIDPAKVTRCALQNSA 554
Query: 1553 SVAGMVLTTQAIVVEKPKRKXXXXXXPQGLTV 1648
SVAGMVLTTQAIVVEKPK + PQGLTV
Sbjct: 555 SVAGMVLTTQAIVVEKPKPRTPAAASPQGLTV 586
Score = 103 bits (256), Expect(2) = 0.0
Identities = 51/59 (86%), Positives = 55/59 (93%)
Frame = +1
Query: 1 FVVRANAKEIAFGQASRTALQAGIDKLADAVGVTLGPRGRNVVLDEYGSPKVVNDGVTI 177
F VRANAK+IAF Q SR ALQ+GIDKLADAVG+TLGPRGRNVVLDE+GSPKVVNDGVTI
Sbjct: 42 FAVRANAKDIAFDQDSRAALQSGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTI 100
>ref|XP_002277357.2| PREDICTED: ruBisCO large subunit-binding protein subunit alpha,
chloroplastic-like [Vitis vinifera]
Length = 586
Score = 731 bits (1888), Expect(2) = 0.0
Identities = 387/452 (85%), Positives = 413/452 (91%)
Frame = +2
Query: 293 TASVLAREIIKLGLLSVTSGANPVSIKKGIDKTIQGLVAELEKKARSIEGRDDVKAVATI 472
TASVLAREIIKLGLLSVTSGANPVSIKKGIDKT+ LV ELEKKAR +EG DD+KAVA+I
Sbjct: 135 TASVLAREIIKLGLLSVTSGANPVSIKKGIDKTVHELVKELEKKARPVEGGDDIKAVASI 194
Query: 473 SAGNDEDIGIMIADAIDKVGADGVLSIESSSSFETTVDVEEGMEIDRGYISPQFVTNPEK 652
SAGNDE IG MIADAI+KVG DGVLSIESSSSFETTVDVEEGMEIDRGYISPQFVTNPEK
Sbjct: 195 SAGNDEFIGSMIADAINKVGPDGVLSIESSSSFETTVDVEEGMEIDRGYISPQFVTNPEK 254
Query: 653 LIAEFENAKVLVTDQKISSIKDIIPLLEKTTQLRSPLLIIAEDVTGEALATLVVNKLRGI 832
LIAEFENA+VLVTDQKI++IKDIIPLLEKTTQLRSPLLI+AEDVTGEALATLVVNKLRGI
Sbjct: 255 LIAEFENARVLVTDQKITTIKDIIPLLEKTTQLRSPLLIVAEDVTGEALATLVVNKLRGI 314
Query: 833 INVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGLMIENTEVEQLGIARKVTISKDST 1012
+NVAAIKAPGFGERRKALLQDIAI+TGAEFQA+DLGL+IENT VEQLG+ARKVTI+KDST
Sbjct: 315 LNVAAIKAPGFGERRKALLQDIAIMTGAEFQANDLGLLIENTSVEQLGLARKVTITKDST 374
Query: 1013 TIIADAASKDEIHARIAQIKRELSETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELE 1192
TIIADAASKDEI ARIAQIK+EL+ETDSVYD+EKLAERIAKLSGGVAVIKVGAATETELE
Sbjct: 375 TIIADAASKDEIQARIAQIKKELAETDSVYDTEKLAERIAKLSGGVAVIKVGAATETELE 434
Query: 1193 DRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSMFVPAIKEKFDDADERLGADIVQKALV 1372
DRKLRIEDAKNATFAAIEEGIVPGGGAA VHLS +VPAIK+K +DADERLGADIVQKALV
Sbjct: 435 DRKLRIEDAKNATFAAIEEGIVPGGGAAFVHLSTYVPAIKDKLEDADERLGADIVQKALV 494
Query: 1373 APASLIAHNXXXXXXXXXXXXXXXXWEIGYNAMTDKYENLIQSGVIDPAKVTRCALQNAA 1552
APASLIAHN W +GYNAMTDKYENL+++GVIDPAKV RCALQNAA
Sbjct: 495 APASLIAHNAGVEGEVVVEKIKACEWAVGYNAMTDKYENLVEAGVIDPAKVARCALQNAA 554
Query: 1553 SVAGMVLTTQAIVVEKPKRKXXXXXXPQGLTV 1648
SVAGMVLTTQAIVVEK K K PQGLT+
Sbjct: 555 SVAGMVLTTQAIVVEKAKPKAPVAAPPQGLTI 586
Score = 106 bits (264), Expect(2) = 0.0
Identities = 53/59 (89%), Positives = 57/59 (96%)
Frame = +1
Query: 1 FVVRANAKEIAFGQASRTALQAGIDKLADAVGVTLGPRGRNVVLDEYGSPKVVNDGVTI 177
FVVRA+AKEIAF Q+SR ALQAGIDKLADAVG+TLGPRGRNVVLDE+GSPKVVNDGVTI
Sbjct: 42 FVVRASAKEIAFDQSSRAALQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTI 100
>ref|XP_002328161.1| predicted protein [Populus trichocarpa] gi|222837676|gb|EEE76041.1|
predicted protein [Populus trichocarpa]
Length = 587
Score = 727 bits (1876), Expect(2) = 0.0
Identities = 384/449 (85%), Positives = 411/449 (91%)
Frame = +2
Query: 293 TASVLAREIIKLGLLSVTSGANPVSIKKGIDKTIQGLVAELEKKARSIEGRDDVKAVATI 472
TASVLAREIIKLGLLSVTSGANPVSIK+GIDKT+QGLV ELEKKAR ++GRDD+KAVA+I
Sbjct: 135 TASVLAREIIKLGLLSVTSGANPVSIKRGIDKTVQGLVEELEKKARPVKGRDDIKAVASI 194
Query: 473 SAGNDEDIGIMIADAIDKVGADGVLSIESSSSFETTVDVEEGMEIDRGYISPQFVTNPEK 652
SAGNDE IG MIADAIDKVG DGVLSIESSSSFET V+VEEGMEIDRGYISPQFVTNPEK
Sbjct: 195 SAGNDELIGTMIADAIDKVGPDGVLSIESSSSFETVVEVEEGMEIDRGYISPQFVTNPEK 254
Query: 653 LIAEFENAKVLVTDQKISSIKDIIPLLEKTTQLRSPLLIIAEDVTGEALATLVVNKLRGI 832
LI EFENA+VL+TDQKI++IKDIIPLLEKTTQLR+PLLIIAEDVTGEALATLVVNKLRG+
Sbjct: 255 LICEFENARVLITDQKITAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGV 314
Query: 833 INVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGLMIENTEVEQLGIARKVTISKDST 1012
+NVAAIKAPGFGERRKA+LQDIAILTGAEFQASDLGL IENT +EQLG+ARKVTISKDST
Sbjct: 315 LNVAAIKAPGFGERRKAMLQDIAILTGAEFQASDLGLSIENTSIEQLGLARKVTISKDST 374
Query: 1013 TIIADAASKDEIHARIAQIKRELSETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELE 1192
TIIADAASKDE+ ARIAQ+K+ELSETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELE
Sbjct: 375 TIIADAASKDELQARIAQLKKELSETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELE 434
Query: 1193 DRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSMFVPAIKEKFDDADERLGADIVQKALV 1372
DRKLRIEDAKNATFAAIEEGIVPGGGAALVHLS VPAIK+K +DADERLGADIVQKALV
Sbjct: 435 DRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSTCVPAIKDKIEDADERLGADIVQKALV 494
Query: 1373 APASLIAHNXXXXXXXXXXXXXXXXWEIGYNAMTDKYENLIQSGVIDPAKVTRCALQNAA 1552
+PASLIA N WEIGYNAMTDKYENL+++GVIDPAKVTRCALQN+A
Sbjct: 495 SPASLIAQNAGIEGEVVVEKLKASEWEIGYNAMTDKYENLMEAGVIDPAKVTRCALQNSA 554
Query: 1553 SVAGMVLTTQAIVVEKPKRKXXXXXXPQG 1639
SVAGMVLTTQAIVVEKPK K QG
Sbjct: 555 SVAGMVLTTQAIVVEKPKPKTPAAAATQG 583
Score = 102 bits (255), Expect(2) = 0.0
Identities = 51/59 (86%), Positives = 55/59 (93%)
Frame = +1
Query: 1 FVVRANAKEIAFGQASRTALQAGIDKLADAVGVTLGPRGRNVVLDEYGSPKVVNDGVTI 177
F VRANAK+IAF Q SR ALQ+GIDKLADAVG+TLGPRGRNVVLDE+GSPKVVNDGVTI
Sbjct: 42 FSVRANAKDIAFDQKSRAALQSGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTI 100
>ref|XP_003538152.1| PREDICTED: ruBisCO large subunit-binding protein subunit alpha,
chloroplastic-like isoform 1 [Glycine max]
Length = 584
Score = 728 bits (1879), Expect(2) = 0.0
Identities = 380/452 (84%), Positives = 414/452 (91%)
Frame = +2
Query: 293 TASVLAREIIKLGLLSVTSGANPVSIKKGIDKTIQGLVAELEKKARSIEGRDDVKAVATI 472
TASVLAREIIKLGLLSVTSGANPVS+K+GIDKT+QGLV ELEKKAR ++G DD+KAVA+I
Sbjct: 133 TASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVQGLVEELEKKARPVKGGDDIKAVASI 192
Query: 473 SAGNDEDIGIMIADAIDKVGADGVLSIESSSSFETTVDVEEGMEIDRGYISPQFVTNPEK 652
SAGNDE IG MIA+AIDKVG DGVLSIESSSSFETTV+VEEGMEIDRGYISPQFVTNPEK
Sbjct: 193 SAGNDELIGQMIAEAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEK 252
Query: 653 LIAEFENAKVLVTDQKISSIKDIIPLLEKTTQLRSPLLIIAEDVTGEALATLVVNKLRGI 832
LI EFENA+VL+TDQKIS+IKDIIPLLEKTTQLR+PLLIIAEDVTGEALATLVVNKLRGI
Sbjct: 253 LIVEFENARVLITDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGI 312
Query: 833 INVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGLMIENTEVEQLGIARKVTISKDST 1012
+NVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGL++ENT VEQLG+ARK+TISKDST
Sbjct: 313 LNVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGLLVENTSVEQLGLARKITISKDST 372
Query: 1013 TIIADAASKDEIHARIAQIKRELSETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELE 1192
TIIADAA+KDE+ AR+AQ+K+ELS+TDSVYD+EKLAERIAKLSGGVAVIKVGAATETELE
Sbjct: 373 TIIADAATKDELQARVAQLKKELSQTDSVYDTEKLAERIAKLSGGVAVIKVGAATETELE 432
Query: 1193 DRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSMFVPAIKEKFDDADERLGADIVQKALV 1372
DRKLRIEDAKNATFAAIEEGIVPGGG ALVHLS VPA+K+K DDADERLGADIVQKAL+
Sbjct: 433 DRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSTHVPALKDKLDDADERLGADIVQKALI 492
Query: 1373 APASLIAHNXXXXXXXXXXXXXXXXWEIGYNAMTDKYENLIQSGVIDPAKVTRCALQNAA 1552
APA+LIA N WE+GYNAM D+YENL+++GVIDPAKVTRCALQNAA
Sbjct: 493 APAALIAQNAGIEGEVVVEKIKSGEWEVGYNAMVDRYENLVEAGVIDPAKVTRCALQNAA 552
Query: 1553 SVAGMVLTTQAIVVEKPKRKXXXXXXPQGLTV 1648
SVAGMVLTTQAIVVEKPK K PQGLTV
Sbjct: 553 SVAGMVLTTQAIVVEKPKPKAPVAGAPQGLTV 584
Score = 101 bits (251), Expect(2) = 0.0
Identities = 50/59 (84%), Positives = 56/59 (94%)
Frame = +1
Query: 1 FVVRANAKEIAFGQASRTALQAGIDKLADAVGVTLGPRGRNVVLDEYGSPKVVNDGVTI 177
F V+A+AKEIAF Q SR+A+QAGIDKLADAVG+TLGPRGRNVVLDE+GSPKVVNDGVTI
Sbjct: 40 FSVKASAKEIAFDQHSRSAMQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTI 98
>ref|XP_003539777.1| PREDICTED: ruBisCO large subunit-binding protein subunit alpha,
chloroplastic-like [Glycine max]
Length = 584
Score = 727 bits (1876), Expect(2) = 0.0
Identities = 379/452 (83%), Positives = 414/452 (91%)
Frame = +2
Query: 293 TASVLAREIIKLGLLSVTSGANPVSIKKGIDKTIQGLVAELEKKARSIEGRDDVKAVATI 472
TASVLAREIIKLGLLSVTSGANPVS+K+GIDKT+QGLV ELEKKAR ++G DD+KAVA+I
Sbjct: 133 TASVLAREIIKLGLLSVTSGANPVSLKRGIDKTVQGLVEELEKKARPVKGGDDIKAVASI 192
Query: 473 SAGNDEDIGIMIADAIDKVGADGVLSIESSSSFETTVDVEEGMEIDRGYISPQFVTNPEK 652
SAGNDE IG MIA+AIDKVG DGVLSIESSSSFETTV+VEEGMEIDRGYISPQFVTNPEK
Sbjct: 193 SAGNDELIGQMIAEAIDKVGPDGVLSIESSSSFETTVEVEEGMEIDRGYISPQFVTNPEK 252
Query: 653 LIAEFENAKVLVTDQKISSIKDIIPLLEKTTQLRSPLLIIAEDVTGEALATLVVNKLRGI 832
LI EFENA+VL+TDQKIS+IKDIIPLLEKTTQLR+PLLIIAEDVTGEALATLVVNKLRGI
Sbjct: 253 LIVEFENARVLITDQKISAIKDIIPLLEKTTQLRAPLLIIAEDVTGEALATLVVNKLRGI 312
Query: 833 INVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGLMIENTEVEQLGIARKVTISKDST 1012
+NVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGL++ENT VEQLG+ARK+TISKDST
Sbjct: 313 LNVAAIKAPGFGERRKALLQDIAILTGAEFQASDLGLLVENTSVEQLGLARKITISKDST 372
Query: 1013 TIIADAASKDEIHARIAQIKRELSETDSVYDSEKLAERIAKLSGGVAVIKVGAATETELE 1192
T+IADAA+KDE+ AR+AQ+K+ELS+TDSVYD+EKLAERIAKLSGGVAVIKVGAATETELE
Sbjct: 373 TVIADAATKDELQARVAQLKKELSQTDSVYDTEKLAERIAKLSGGVAVIKVGAATETELE 432
Query: 1193 DRKLRIEDAKNATFAAIEEGIVPGGGAALVHLSMFVPAIKEKFDDADERLGADIVQKALV 1372
DRKLRIEDAKNATFAAIEEGIVPGGG ALVHLS VPAIK+K +DADERLGADIVQKAL+
Sbjct: 433 DRKLRIEDAKNATFAAIEEGIVPGGGTALVHLSTHVPAIKDKLEDADERLGADIVQKALI 492
Query: 1373 APASLIAHNXXXXXXXXXXXXXXXXWEIGYNAMTDKYENLIQSGVIDPAKVTRCALQNAA 1552
APA+LIA N WE+GYNAM D+YENL+++GVIDPAKVTRCALQNAA
Sbjct: 493 APAALIAQNAGIEGEVVVEKIKSGEWEVGYNAMADRYENLVEAGVIDPAKVTRCALQNAA 552
Query: 1553 SVAGMVLTTQAIVVEKPKRKXXXXXXPQGLTV 1648
SVAGMVLTTQAIVVEKPK K PQGLTV
Sbjct: 553 SVAGMVLTTQAIVVEKPKPKAPVAGAPQGLTV 584
Score = 101 bits (251), Expect(2) = 0.0
Identities = 50/59 (84%), Positives = 56/59 (94%)
Frame = +1
Query: 1 FVVRANAKEIAFGQASRTALQAGIDKLADAVGVTLGPRGRNVVLDEYGSPKVVNDGVTI 177
F V+A+AKEIAF Q SR+A+QAGIDKLADAVG+TLGPRGRNVVLDE+GSPKVVNDGVTI
Sbjct: 40 FSVKASAKEIAFDQHSRSAMQAGIDKLADAVGLTLGPRGRNVVLDEFGSPKVVNDGVTI 98