BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00002366
         (1788 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD ...   508   e-141
emb|CBI32760.3| unnamed protein product [Vitis vinifera]              508   e-141
ref|XP_002326192.1| predicted protein [Populus trichocarpa] gi|2...   492   e-136
ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [...   473   e-131
ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-...   447   e-123

>ref|XP_002276710.2| PREDICTED: RNA polymerase sigma factor rpoD [Vitis vinifera]
          Length = 572

 Score =  508 bits (1309), Expect = e-141
 Identities = 285/522 (54%), Positives = 353/522 (67%), Gaps = 5/522 (0%)
 Frame = -3

Query: 1783 SITRNFPTSILLQEQRDEFRPLLH-FKDDKMSQVTPEKRYTESGPSFCEEKQCSESDQYI 1607
            +I R FPTS+LLQEQRDE+RP     KD++  Q T EKR  E   S  +E+   + +QY+
Sbjct: 55   TIARKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVS-ADEENSDDHNQYM 113

Query: 1606 KDFENQLLYWPVSLY--PSLHLEEK-PLLLSTMQVTAPKNDKVLNVXXXXXXXXXXXXXX 1436
             +FE QLL  P   Y  PS    EK P   S M+      +  ++V              
Sbjct: 114  VNFERQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALS 173

Query: 1435 XXXXXXXXXXXANLPGDDXXXXXXXXXXXXSAIQFPLEEKIKVKSGRLLEXXXXXXXXXX 1256
                       A L G D            S+   PLEEK  V+S RLLE          
Sbjct: 174  ASKQAVSLYENAKLLGADLEDSPSPSLGAISSPNLPLEEKT-VRSTRLLERRSKKRRNPK 232

Query: 1255 XXXVIHEAPRLKMVDVHHKMNEVFHLNDPLRLFLSGSESRKLLTAKEESELFVQIQELAR 1076
                +HE    +  +V  K+NE +   DPLRLFL G E+RKLLTAKEESEL VQIQEL R
Sbjct: 233  VA--VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMR 290

Query: 1075 LEEVKQRLQSQFGTEPTLIEWAEAVGMNCLVLQSHIHKGNISREKMTYANFRLVVHVAKR 896
            LEEVK+RLQS    EPT++EWAEAVG++C VLQS +H GN SR+K+ YAN R+VVH+AK+
Sbjct: 291  LEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQ 350

Query: 895  YQGWGMNLQDLLQEGSKGLMRSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLP 716
            YQG G+NLQDLLQEGS GLM S+EKFKP AGCRF++Y+YWWIRQ++RKAIFQ+SRTIRLP
Sbjct: 351  YQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLP 410

Query: 715  ENVYNTLRQVRNAKKQCIQEG-YQPSNEELARRMGMTVEKLMTLFASTKTPLSMQQPVWA 539
            EN+Y+ L +V+ AK+  IQEG + P+ EE+A R+G+T+EKL  L   T+ PLSMQQPVWA
Sbjct: 411  ENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWA 470

Query: 538  EQDTTFQEITADTEIERPDQVVAKQLMRQHLCNFLNILSPKERRIIRLRFGIEDGKQNSL 359
            +QDTTFQE+TADT IE PD  VAKQLMRQH+ N L++L+PKERRIIRLRFGI DG   +L
Sbjct: 471  DQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTL 530

Query: 358  SQIGTIFGISKERVRQLESRALDKLRKCLSSQGLEAYAELLI 233
            S+IG +FG SKERVRQLE RAL KL++CLSS GLE+Y +LL+
Sbjct: 531  SEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 572


>emb|CBI32760.3| unnamed protein product [Vitis vinifera]
          Length = 561

 Score =  508 bits (1309), Expect = e-141
 Identities = 285/522 (54%), Positives = 353/522 (67%), Gaps = 5/522 (0%)
 Frame = -3

Query: 1783 SITRNFPTSILLQEQRDEFRPLLH-FKDDKMSQVTPEKRYTESGPSFCEEKQCSESDQYI 1607
            +I R FPTS+LLQEQRDE+RP     KD++  Q T EKR  E   S  +E+   + +QY+
Sbjct: 44   TIARKFPTSVLLQEQRDEYRPFPQALKDERTFQATLEKRQMEIVVS-ADEENSDDHNQYM 102

Query: 1606 KDFENQLLYWPVSLY--PSLHLEEK-PLLLSTMQVTAPKNDKVLNVXXXXXXXXXXXXXX 1436
             +FE QLL  P   Y  PS    EK P   S M+      +  ++V              
Sbjct: 103  VNFERQLLLQPGLWYSLPSSQTGEKSPFSSSIMKSITTDIENSMDVKPCDVLALAKKALS 162

Query: 1435 XXXXXXXXXXXANLPGDDXXXXXXXXXXXXSAIQFPLEEKIKVKSGRLLEXXXXXXXXXX 1256
                       A L G D            S+   PLEEK  V+S RLLE          
Sbjct: 163  ASKQAVSLYENAKLLGADLEDSPSPSLGAISSPNLPLEEKT-VRSTRLLERRSKKRRNPK 221

Query: 1255 XXXVIHEAPRLKMVDVHHKMNEVFHLNDPLRLFLSGSESRKLLTAKEESELFVQIQELAR 1076
                +HE    +  +V  K+NE +   DPLRLFL G E+RKLLTAKEESEL VQIQEL R
Sbjct: 222  VA--VHENHGSRRAEVQRKINEGYDPKDPLRLFLWGPETRKLLTAKEESELIVQIQELMR 279

Query: 1075 LEEVKQRLQSQFGTEPTLIEWAEAVGMNCLVLQSHIHKGNISREKMTYANFRLVVHVAKR 896
            LEEVK+RLQS    EPT++EWAEAVG++C VLQS +H GN SR+K+ YAN R+VVH+AK+
Sbjct: 280  LEEVKKRLQSHLKREPTVVEWAEAVGLSCQVLQSQLHSGNRSRQKLIYANLRMVVHIAKQ 339

Query: 895  YQGWGMNLQDLLQEGSKGLMRSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLP 716
            YQG G+NLQDLLQEGS GLM S+EKFKP AGCRF++Y+YWWIRQ++RKAIFQ+SRTIRLP
Sbjct: 340  YQGRGLNLQDLLQEGSMGLMNSVEKFKPNAGCRFASYAYWWIRQAVRKAIFQHSRTIRLP 399

Query: 715  ENVYNTLRQVRNAKKQCIQEG-YQPSNEELARRMGMTVEKLMTLFASTKTPLSMQQPVWA 539
            EN+Y+ L +V+ AK+  IQEG + P+ EE+A R+G+T+EKL  L   T+ PLSMQQPVWA
Sbjct: 400  ENMYSLLGKVKEAKRLFIQEGHHDPTKEEIAERVGITIEKLQRLLLHTRMPLSMQQPVWA 459

Query: 538  EQDTTFQEITADTEIERPDQVVAKQLMRQHLCNFLNILSPKERRIIRLRFGIEDGKQNSL 359
            +QDTTFQE+TADT IE PD  VAKQLMRQH+ N L++L+PKERRIIRLRFGI DG   +L
Sbjct: 460  DQDTTFQEVTADTGIEIPDVSVAKQLMRQHVRNLLHVLTPKERRIIRLRFGIGDGIPRTL 519

Query: 358  SQIGTIFGISKERVRQLESRALDKLRKCLSSQGLEAYAELLI 233
            S+IG +FG SKERVRQLE RAL KL++CLSS GLE+Y +LL+
Sbjct: 520  SEIGLVFGFSKERVRQLEQRALHKLKQCLSSHGLESYTDLLV 561


>ref|XP_002326192.1| predicted protein [Populus trichocarpa] gi|222833385|gb|EEE71862.1|
            predicted protein [Populus trichocarpa]
          Length = 535

 Score =  492 bits (1266), Expect = e-136
 Identities = 280/529 (52%), Positives = 352/529 (66%), Gaps = 13/529 (2%)
 Frame = -3

Query: 1783 SITRNFPTSILLQEQRDEFRPLLH-FKDDKMSQVTPEKRYTESGPSFCEEKQCSESDQYI 1607
            S  ++FPTS+LLQEQRDEFRPL + FK+D+ SQ T ++R TE G S  E K   E DQ +
Sbjct: 46   STAQHFPTSVLLQEQRDEFRPLQNIFKEDRASQATLDRRKTEIGTSGHEGKDSDELDQLV 105

Query: 1606 KDFENQL----LYWP-----VSLYPS--LHLEEKPLLLSTMQVTAPKNDKVLNVXXXXXX 1460
            ++FE QL     YW      + + P+  ++L ++ L  S        N+  L+       
Sbjct: 106  ENFEYQLHHWPAYWNLTDKLIDVEPTNVINLAKRALSASKHAAFLADNNTDLD------- 158

Query: 1459 XXXXXXXXXXXXXXXXXXXANLPGDDXXXXXXXXXXXXSAIQFPLEEKIKVKSGRLLEXX 1280
                                NL                 +  F LEE   V+S R L   
Sbjct: 159  --------------------NLASTS-------------SSSFSLEEVKIVRSRRHLARQ 185

Query: 1279 XXXXXXXXXXXVIHEAPRLKMVDVHHKMNEVFHLNDPLRLFLSGSESRKLLTAKEESELF 1100
                       +I E    K  D+  ++++ F  NDPLRLFL G E+++LLTAKEE EL 
Sbjct: 186  SLNRRAPKTKDLIFETYDSKSADIQKRLSQGFDPNDPLRLFLWGPETKQLLTAKEEFELI 245

Query: 1099 VQIQELARLEEVKQRLQSQFGTEPTLIEWAEAVGMNCLVLQSHIHKGNISREKMTYANFR 920
             QIQ+L  LE VK RL+SQFG EPTL+EWA+AVG++C VL+  +H GN SREK+  AN R
Sbjct: 246  AQIQDLMNLEGVKNRLESQFGREPTLVEWAQAVGLSCHVLKLQLHSGNRSREKLINANLR 305

Query: 919  LVVHVAKRYQGWGMNLQDLLQEGSKGLMRSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQ 740
            +VVH+AKRYQ  G+ LQDLLQEG+ GLM+SIEKFKPQAGCRF+TY+YWWIRQ+I KAIFQ
Sbjct: 306  MVVHIAKRYQNRGLGLQDLLQEGTVGLMKSIEKFKPQAGCRFATYAYWWIRQTITKAIFQ 365

Query: 739  NSRTIRLPENVYNTLRQVRNAKKQCIQEG-YQPSNEELARRMGMTVEKLMTLFASTKTPL 563
            +SRTIRLPENVY  L +V  AK+  IQEG +QP+ EE+ARR+G+ ++KL  L   T+TPL
Sbjct: 366  HSRTIRLPENVYGLLGKVMEAKRSYIQEGNHQPTAEEIARRVGIAIDKLEKLLCFTRTPL 425

Query: 562  SMQQPVWAEQDTTFQEITADTEIERPDQVVAKQLMRQHLCNFLNILSPKERRIIRLRFGI 383
            SMQQ VW++Q+TTFQEITADTEIE PD  VAKQLMR+H+   LNILS KERRIIRLRFGI
Sbjct: 426  SMQQTVWSDQNTTFQEITADTEIEIPDMSVAKQLMRKHIRGLLNILSLKERRIIRLRFGI 485

Query: 382  EDGKQNSLSQIGTIFGISKERVRQLESRALDKLRKCLSSQGLEAYAELL 236
            EDGKQ SLS+IG +FG+SKERVRQLESRAL KL++C+ S GL+AYA+LL
Sbjct: 486  EDGKQKSLSEIGNVFGLSKERVRQLESRALYKLKQCVGSHGLDAYADLL 534


>ref|XP_002519509.1| RNA polymerase sigma factor rpoD, putative [Ricinus communis]
            gi|223541372|gb|EEF42923.1| RNA polymerase sigma factor
            rpoD, putative [Ricinus communis]
          Length = 548

 Score =  473 bits (1217), Expect = e-131
 Identities = 269/520 (51%), Positives = 343/520 (65%), Gaps = 3/520 (0%)
 Frame = -3

Query: 1783 SITRNFPTSILLQEQRDEFRPLLH-FKDDKMSQVTPEKRYTESGPSFCEEKQCSES-DQY 1610
            SI RNFPTS+LLQEQRDEFRPLL+ FK+DK  Q T + +  + G S  +E  CS+  DQ 
Sbjct: 53   SIARNFPTSVLLQEQRDEFRPLLNIFKEDKTFQATVDTKQMDPGTSD-QEGICSDVLDQL 111

Query: 1609 IKDFENQLLYWPVSLYPSLHLEEKPLLLSTMQVTAPKNDKVLNVXXXXXXXXXXXXXXXX 1430
            I    +  L W      SL ++        + V  P N   L                  
Sbjct: 112  IL---HSNLSW------SLTMQSITTNTDELMVVEPTNVIDLARKALSASKEAALLAQKC 162

Query: 1429 XXXXXXXXXANLPGDDXXXXXXXXXXXXSAIQFPLEEKIKVKSGRLLEXXXXXXXXXXXX 1250
                        P D                 F LEE   V+S R LE            
Sbjct: 163  ANLDDTVSTGLEPTD--------------LSNFSLEEVKTVRSTRRLERQSKNRRVTKTK 208

Query: 1249 XVIHEAPRLKMVDVHHKMNEVFHLNDPLRLFLSGSESRKLLTAKEESELFVQIQELARLE 1070
             + HE    +   V  K+NE F   DPLRLFL G E+++LLTAKEESEL  Q+Q+L  LE
Sbjct: 209  EIFHEPYSSRRAGVQKKINEGFDPKDPLRLFLWGPETKQLLTAKEESELIGQVQDLMSLE 268

Query: 1069 EVKQRLQSQFGTEPTLIEWAEAVGMNCLVLQSHIHKGNISREKMTYANFRLVVHVAKRYQ 890
             VK++ + QFG +PTL+EWA+AVG++  V+QS +H GN SREK+  AN R+VVH+AK+YQ
Sbjct: 269  NVKEKFKLQFGRDPTLVEWADAVGLSYSVMQSQLHSGNRSREKLINANLRMVVHIAKQYQ 328

Query: 889  GWGMNLQDLLQEGSKGLMRSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLPEN 710
            G G++LQDLLQEGS GLM+SIEKFKPQ GCRF+TY+YWWIRQ++RKAIFQ+SRTIRLPEN
Sbjct: 329  GRGLSLQDLLQEGSMGLMKSIEKFKPQVGCRFATYAYWWIRQTVRKAIFQHSRTIRLPEN 388

Query: 709  VYNTLRQVRNAKKQCIQEG-YQPSNEELARRMGMTVEKLMTLFASTKTPLSMQQPVWAEQ 533
            VY+TL +V  AK+  I EG + P+ EELA+R+G+T  +L  L    + PLSMQQ VWA+Q
Sbjct: 389  VYHTLGKVSEAKRSYIMEGNHNPTKEELAKRIGITTVRLERLLYMARMPLSMQQTVWADQ 448

Query: 532  DTTFQEITADTEIERPDQVVAKQLMRQHLCNFLNILSPKERRIIRLRFGIEDGKQNSLSQ 353
            +TTFQEITAD E+E P+  VAKQLMR+H+ + LNIL+P+ER+IIRLR+GIEDGK+ SLS+
Sbjct: 449  ETTFQEITADIEVEIPELCVAKQLMRKHVLSLLNILNPRERKIIRLRYGIEDGKKKSLSE 508

Query: 352  IGTIFGISKERVRQLESRALDKLRKCLSSQGLEAYAELLI 233
            IG++FG+SKERVRQLESRAL KL++CL+S GLEAYA+LL+
Sbjct: 509  IGSVFGLSKERVRQLESRALYKLKQCLASHGLEAYADLLV 548


>ref|XP_003536999.1| PREDICTED: RNA polymerase sigma factor rpoD-like [Glycine max]
          Length = 571

 Score =  447 bits (1149), Expect = e-123
 Identities = 254/522 (48%), Positives = 322/522 (61%), Gaps = 8/522 (1%)
 Frame = -3

Query: 1774 RNFPTSILLQEQRDEFRPLLHF-KDDKMSQVTPEKRYTESGPSFCEEKQCSESDQYIKDF 1598
            +NFP S+LL EQRDE+RPLLH  K+DK SQ     R  ++  +  EE     +DQ + DF
Sbjct: 55   QNFPASVLLPEQRDEYRPLLHMSKEDKTSQAMLSTRQMDT-VTVHEENNTENADQVVLDF 113

Query: 1597 ENQLLYWPVSLYPSLHLEEKPLLLSTMQVTAPKNDKVLNVXXXXXXXXXXXXXXXXXXXX 1418
               L +WP     S  + E     +   V+     +   V                    
Sbjct: 114  RKHLHHWPNLQLTSSQIGEVAASSTLEHVSVDLERRPNGVQFNGVSLAKKALSTSKQESS 173

Query: 1417 XXXXXANLPGDDXXXXXXXXXXXXSAIQFPLEEKIKVKSGRLLEXXXXXXXXXXXXXVIH 1238
                  ++  DD             +I         V+S RLLE             +  
Sbjct: 174  VVEDLKSIKADDVPFSLASTSLADPSIG----RNKTVRSTRLLERRSKQRKVPKSKVIDD 229

Query: 1237 EAPRLKMVDVHHKM------NEVFHLNDPLRLFLSGSESRKLLTAKEESELFVQIQELAR 1076
            E    +  D   K+      NE    +DPLRLFL G E+++LLT ++ES+L  QIQ+L R
Sbjct: 230  ETYLARKDDAQEKLRAEKKKNEELDQDDPLRLFLWGPETKQLLTLEQESQLISQIQDLLR 289

Query: 1075 LEEVKQRLQSQFGTEPTLIEWAEAVGMNCLVLQSHIHKGNISREKMTYANFRLVVHVAKR 896
            LEEVK  LQSQFG EPT+ EWAE  G+NC +LQS +H GN SREK+  AN R+VVHVAK 
Sbjct: 290  LEEVKTNLQSQFGREPTMAEWAEGAGLNCRLLQSQLHSGNRSREKLIQANLRMVVHVAKS 349

Query: 895  YQGWGMNLQDLLQEGSKGLMRSIEKFKPQAGCRFSTYSYWWIRQSIRKAIFQNSRTIRLP 716
            YQG G++LQDLLQEGS GLM+S+EKF P AG RF  Y++WWIRQ+IRKA+F++SRTIRLP
Sbjct: 350  YQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLP 409

Query: 715  ENVYNTLRQVRNAKKQCIQEG-YQPSNEELARRMGMTVEKLMTLFASTKTPLSMQQPVWA 539
            E V+  L +V  AKK  IQEG   P+ EELARR+G+TVEK+  L  S + P+SMQQ VWA
Sbjct: 410  EKVFILLGKVMEAKKLYIQEGNLHPTKEELARRVGVTVEKIDKLLFSARIPISMQQTVWA 469

Query: 538  EQDTTFQEITADTEIERPDQVVAKQLMRQHLCNFLNILSPKERRIIRLRFGIEDGKQNSL 359
            +Q+TTFQEITAD  +E  D  V KQLMR+H+ N L++L PKERRIIRLR+G EDG+Q SL
Sbjct: 470  DQNTTFQEITADPTVEATDVTVEKQLMRRHVLNVLSVLHPKERRIIRLRYGFEDGEQKSL 529

Query: 358  SQIGTIFGISKERVRQLESRALDKLRKCLSSQGLEAYAELLI 233
            S+IG IFG+SKERVRQLE RAL KL+KCL  QGL+AY +LL+
Sbjct: 530  SEIGDIFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 571