BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00002329
         (1169 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274975.1| PREDICTED: 60S ribosomal protein L4 [Vitis v...   544   e-152
ref|XP_002285741.1| PREDICTED: 60S ribosomal protein L4-1 [Vitis...   543   e-152
ref|XP_003542496.1| PREDICTED: 60S ribosomal protein L4-1-like [...   540   e-151
ref|XP_004142108.1| PREDICTED: 60S ribosomal protein L4-like [Cu...   537   e-150
sp|Q9XF97.1|RL4_PRUAR RecName: Full=60S ribosomal protein L4; Al...   530   e-148

>ref|XP_002274975.1| PREDICTED: 60S ribosomal protein L4 [Vitis vinifera]
          Length = 406

 Score =  544 bits (1402), Expect = e-152
 Identities = 275/364 (75%), Positives = 299/364 (82%)
 Frame = -1

Query: 1094 MATAAARPLVTVQKLEGEMETDGSNSLPLPDVMKASIRPDIVNYVHSNISKNSRQPYAVS 915
            MA AAARPLVTVQ L+ +M TDG N++PLPDVMKASIRPDIV +VHSNISKNSRQPYAVS
Sbjct: 1    MAAAAARPLVTVQVLKSDMATDGGNAVPLPDVMKASIRPDIVTFVHSNISKNSRQPYAVS 60

Query: 914  KRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTQIWRRWHRKI 735
            +RAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPT+IWRRWHRKI
Sbjct: 61   RRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKI 120

Query: 734  NINQKRYXXXXXXXXXXXXXXXXARGHKIENVPEIPLVVGDSAEGVEKTSAAIKVLKQIG 555
            N+NQKRY                ARGH+IE+VPE+PLV+GDSAE VEKTSAAI +LKQ+G
Sbjct: 121  NVNQKRYAVVSAIAASAIPSLVMARGHRIESVPELPLVIGDSAESVEKTSAAIDILKQVG 180

Query: 554  AYADADKAKDSEKIRPGKGKMRNRRYVSKKGPLIVYGTEGSKIVKAFRNIPGVEVANVER 375
            AY DA+KAKDS  IRPGKGKMRNRRY+S+KGPLIVYGTEG+K+VKAFRNIPGVEVANV+R
Sbjct: 181  AYPDAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEVANVDR 240

Query: 374  LNLLKLAPGGHLGRFIIWTKSAFEKLDSIYGSFDKPSEKKKGYVLPRSKMVNADLSRIIN 195
            LNLLKLAPGGHLGRF+IWTKSAFEKLDSIYGSF+K SEKK GY+LPRSKMVNADL+RIIN
Sbjct: 241  LNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKTSEKKNGYLLPRSKMVNADLARIIN 300

Query: 194  SDEVQSVVRPISNEVKRAPMXXXXXXXXXXXXXXXPYAKTXXXXXXXXXXXXXXXXXXXL 15
            SDEVQSVVRPI  EVKRAPM               PYAKT                   L
Sbjct: 301  SDEVQSVVRPIKKEVKRAPMKKNPLKNLNTMLKLNPYAKTARRMALLAEAQRVKAKQEKL 360

Query: 14   DKKR 3
            DKKR
Sbjct: 361  DKKR 364


>ref|XP_002285741.1| PREDICTED: 60S ribosomal protein L4-1 [Vitis vinifera]
          Length = 405

 Score =  543 bits (1399), Expect = e-152
 Identities = 275/361 (76%), Positives = 298/361 (82%)
 Frame = -1

Query: 1085 AAARPLVTVQKLEGEMETDGSNSLPLPDVMKASIRPDIVNYVHSNISKNSRQPYAVSKRA 906
            AAARPLVTVQ L+ +M TDG N++PLPDVMKASIRPDIVN+VHSNISKNSRQPYAVS+RA
Sbjct: 3    AAARPLVTVQVLKSDMATDGGNAVPLPDVMKASIRPDIVNFVHSNISKNSRQPYAVSRRA 62

Query: 905  GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTQIWRRWHRKININ 726
            GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPT+IWRRWHRKIN+N
Sbjct: 63   GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVN 122

Query: 725  QKRYXXXXXXXXXXXXXXXXARGHKIENVPEIPLVVGDSAEGVEKTSAAIKVLKQIGAYA 546
            QKRY                ARGH+IE+VPE+PLV+GDSAE VEKTSAAI +LKQ+GAY 
Sbjct: 123  QKRYAVVSAIAASAVPSLVMARGHRIESVPELPLVIGDSAESVEKTSAAIDILKQVGAYP 182

Query: 545  DADKAKDSEKIRPGKGKMRNRRYVSKKGPLIVYGTEGSKIVKAFRNIPGVEVANVERLNL 366
            DA+KAKDS  IRPGKGKMRNRRY+S+KGPLIVYGTEG+K+VKAFRNIPGVEVANVERLNL
Sbjct: 183  DAEKAKDSHGIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEVANVERLNL 242

Query: 365  LKLAPGGHLGRFIIWTKSAFEKLDSIYGSFDKPSEKKKGYVLPRSKMVNADLSRIINSDE 186
            LKLAPGGHLGRFIIWTKSA EK+DSIYGSFDK SEKKKGY+LPR+KMVNADL+RIINSDE
Sbjct: 243  LKLAPGGHLGRFIIWTKSAIEKVDSIYGSFDKTSEKKKGYLLPRAKMVNADLARIINSDE 302

Query: 185  VQSVVRPISNEVKRAPMXXXXXXXXXXXXXXXPYAKTXXXXXXXXXXXXXXXXXXXLDKK 6
            VQSVVRPI  EVKRAPM               PYAKT                   LDKK
Sbjct: 303  VQSVVRPIKKEVKRAPMKKNPLKNLNTMLKLNPYAKTARRMALLAEAQRVKAKKEKLDKK 362

Query: 5    R 3
            R
Sbjct: 363  R 363


>ref|XP_003542496.1| PREDICTED: 60S ribosomal protein L4-1-like [Glycine max]
          Length = 405

 Score =  540 bits (1390), Expect = e-151
 Identities = 272/361 (75%), Positives = 297/361 (82%)
 Frame = -1

Query: 1085 AAARPLVTVQKLEGEMETDGSNSLPLPDVMKASIRPDIVNYVHSNISKNSRQPYAVSKRA 906
            AAARPLVTVQ L+G+M TD S ++P+PDVMKASIRPDIVN+VHSNISKNSRQPYAVS+RA
Sbjct: 3    AAARPLVTVQALDGDMATDASATVPIPDVMKASIRPDIVNFVHSNISKNSRQPYAVSRRA 62

Query: 905  GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTQIWRRWHRKININ 726
            GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPT+IWRRWHRKIN+N
Sbjct: 63   GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVN 122

Query: 725  QKRYXXXXXXXXXXXXXXXXARGHKIENVPEIPLVVGDSAEGVEKTSAAIKVLKQIGAYA 546
            QKRY                ARGH+IE+VPE+PLVV DSAEGVEKT  AIKVLKQIGA+ 
Sbjct: 123  QKRYAVVSAIAASAIPSLVLARGHRIESVPELPLVVSDSAEGVEKTKEAIKVLKQIGAFP 182

Query: 545  DADKAKDSEKIRPGKGKMRNRRYVSKKGPLIVYGTEGSKIVKAFRNIPGVEVANVERLNL 366
            DA+KAKDS  IRPGKGKMRNRRY+S++GPL+VYGTEG+K VKAFRN+PGVEVANVERLNL
Sbjct: 183  DAEKAKDSRSIRPGKGKMRNRRYISRRGPLVVYGTEGAKAVKAFRNVPGVEVANVERLNL 242

Query: 365  LKLAPGGHLGRFIIWTKSAFEKLDSIYGSFDKPSEKKKGYVLPRSKMVNADLSRIINSDE 186
            LKLAPGGHLGRF+IWTKSAFEKLDSIYGSFDKPSEKKKGY+LPRSKMVN+DLSRIINSDE
Sbjct: 243  LKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKPSEKKKGYLLPRSKMVNSDLSRIINSDE 302

Query: 185  VQSVVRPISNEVKRAPMXXXXXXXXXXXXXXXPYAKTXXXXXXXXXXXXXXXXXXXLDKK 6
            VQSVVRPI  +VKRA +               PYAKT                   LDKK
Sbjct: 303  VQSVVRPIKKDVKRATLKKNPLKNLNSMLKLNPYAKTAKRMALLAEAQRVKVKKEKLDKK 362

Query: 5    R 3
            R
Sbjct: 363  R 363


>ref|XP_004142108.1| PREDICTED: 60S ribosomal protein L4-like [Cucumis sativus]
            gi|449520008|ref|XP_004167026.1| PREDICTED: 60S ribosomal
            protein L4-like [Cucumis sativus]
          Length = 405

 Score =  537 bits (1384), Expect = e-150
 Identities = 273/361 (75%), Positives = 296/361 (81%)
 Frame = -1

Query: 1085 AAARPLVTVQKLEGEMETDGSNSLPLPDVMKASIRPDIVNYVHSNISKNSRQPYAVSKRA 906
            AAARPLV+VQ LEG+M TD + ++PLPDVMKASIRPDIV++VHSNISKNSRQPYAVSKRA
Sbjct: 3    AAARPLVSVQSLEGDMATDAAPTVPLPDVMKASIRPDIVSFVHSNISKNSRQPYAVSKRA 62

Query: 905  GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTQIWRRWHRKININ 726
            GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPT+IWRRWHRKIN+N
Sbjct: 63   GHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKINVN 122

Query: 725  QKRYXXXXXXXXXXXXXXXXARGHKIENVPEIPLVVGDSAEGVEKTSAAIKVLKQIGAYA 546
            QKRY                ARGH+IE VPE+PLVV DSAEGVEKTSAAIKVLKQ+GA+ 
Sbjct: 123  QKRYAVVSAIAASAVPSLVLARGHRIETVPELPLVVSDSAEGVEKTSAAIKVLKQVGAFP 182

Query: 545  DADKAKDSEKIRPGKGKMRNRRYVSKKGPLIVYGTEGSKIVKAFRNIPGVEVANVERLNL 366
            DA+KAKDS  IRPGKGKMRNRRY+S+KGPLIVYGTEG+K+VKAFRNIPGVE+ANVERLNL
Sbjct: 183  DAEKAKDSHAIRPGKGKMRNRRYISRKGPLIVYGTEGAKLVKAFRNIPGVEIANVERLNL 242

Query: 365  LKLAPGGHLGRFIIWTKSAFEKLDSIYGSFDKPSEKKKGYVLPRSKMVNADLSRIINSDE 186
            LKLAPGGHLGRF+IWTKSAFEKLDSIYGSF+K SEKKKGYVLPRSKMVNADLSRIINSDE
Sbjct: 243  LKLAPGGHLGRFVIWTKSAFEKLDSIYGSFEKSSEKKKGYVLPRSKMVNADLSRIINSDE 302

Query: 185  VQSVVRPISNEVKRAPMXXXXXXXXXXXXXXXPYAKTXXXXXXXXXXXXXXXXXXXLDKK 6
            VQSVV+PI   VKR  +               PYAKT                   LDKK
Sbjct: 303  VQSVVKPIKKNVKRPQLKKNPLKNLNAMLKLNPYAKTARRMALLAEEQRVKAKKEKLDKK 362

Query: 5    R 3
            R
Sbjct: 363  R 363


>sp|Q9XF97.1|RL4_PRUAR RecName: Full=60S ribosomal protein L4; AltName: Full=L1
            gi|4887131|gb|AAD32206.1|AF134732_1 60S ribosomal protein
            L1 [Prunus armeniaca]
          Length = 408

 Score =  530 bits (1364), Expect = e-148
 Identities = 268/363 (73%), Positives = 293/363 (80%)
 Frame = -1

Query: 1091 ATAAARPLVTVQKLEGEMETDGSNSLPLPDVMKASIRPDIVNYVHSNISKNSRQPYAVSK 912
            A AAARPLVTVQ LEG+M TD + ++ LPDVMKASIRPDIV +VHSNISKNSRQPYAVSK
Sbjct: 4    AAAAARPLVTVQSLEGDMATDQTQTVALPDVMKASIRPDIVTFVHSNISKNSRQPYAVSK 63

Query: 911  RAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTQIWRRWHRKIN 732
            +AGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPT+IWRRWHRKIN
Sbjct: 64   KAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQGAFGNMCRGGRMFAPTKIWRRWHRKIN 123

Query: 731  INQKRYXXXXXXXXXXXXXXXXARGHKIENVPEIPLVVGDSAEGVEKTSAAIKVLKQIGA 552
            +NQKRY                ARGHKIE VPE+PLVV DS EGVE+TSAA+KVLKQIGA
Sbjct: 124  VNQKRYAVVSAIAASAVPSLVLARGHKIETVPELPLVVSDSIEGVEETSAALKVLKQIGA 183

Query: 551  YADADKAKDSEKIRPGKGKMRNRRYVSKKGPLIVYGTEGSKIVKAFRNIPGVEVANVERL 372
            Y+DA+KAKDS  IRPGKGKMRNRRY+++KGPLIVYGTEG+K+VKAFRNIPG+++ NVERL
Sbjct: 184  YSDAEKAKDSHSIRPGKGKMRNRRYINRKGPLIVYGTEGAKLVKAFRNIPGIDIINVERL 243

Query: 371  NLLKLAPGGHLGRFIIWTKSAFEKLDSIYGSFDKPSEKKKGYVLPRSKMVNADLSRIINS 192
            NLLKLAPGGHLGRF++WTKSAFEKLDSIYGSFDK SEKK GYVLPRSKMVNADL+RIINS
Sbjct: 244  NLLKLAPGGHLGRFVVWTKSAFEKLDSIYGSFDKVSEKKNGYVLPRSKMVNADLARIINS 303

Query: 191  DEVQSVVRPISNEVKRAPMXXXXXXXXXXXXXXXPYAKTXXXXXXXXXXXXXXXXXXXLD 12
            DEVQSVV PI    KRAP+               PYAKT                   LD
Sbjct: 304  DEVQSVVSPIQEGSKRAPLKKNPLRILNTMLKLNPYAKTARRMSLLAEAERVKAKKEKLD 363

Query: 11   KKR 3
            KKR
Sbjct: 364  KKR 366