BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00002324
         (734 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI38027.3| unnamed protein product [Vitis vinifera]              312   4e-83
ref|XP_002274081.1| PREDICTED: uncharacterized protein LOC100257...   312   4e-83
ref|XP_002313773.1| predicted protein [Populus trichocarpa] gi|2...   300   2e-79
ref|NP_565513.1| RNA recognition motif-containing protein [Arabi...   287   2e-75
ref|XP_002880379.1| RNA recognition motif-containing protein [Ar...   284   1e-74

>emb|CBI38027.3| unnamed protein product [Vitis vinifera]
          Length = 918

 Score =  312 bits (800), Expect = 4e-83
 Identities = 162/256 (63%), Positives = 194/256 (75%), Gaps = 12/256 (4%)
 Frame = -1

Query: 734 KQKVARTVVFGGLLNADMAEEVLCRAKEVGTVCSITYPLPKEELELNGLAQDGCRMDGAA 555
           KQ+VARTV+FGGLLNADMAE V  RA+EVGTVCS+TYPLPKEELE +GL+QDGC++D +A
Sbjct: 163 KQRVARTVIFGGLLNADMAEVVHLRAREVGTVCSVTYPLPKEELEHHGLSQDGCKIDASA 222

Query: 554 VLYESVKAARASVGVLHQQKVKGGLVWARQLGGEGSKTQKWKLIVRNLPFKATVNEIRIL 375
           VLY SVK A ASV +LHQ+++KGG+VWARQLGGEGSKTQKWKLIVRNLPFKA V EI+ +
Sbjct: 223 VLYSSVKEAHASVAMLHQKEIKGGIVWARQLGGEGSKTQKWKLIVRNLPFKAKVTEIKDI 282

Query: 374 FSSAGFVWDVFIPNNSETGLSKGFGFVKFTCKKDAENAIQKVNGQTFGKRPIAVDWAVPK 195
           FSSAGFVWD FIP NSETGLS+GF FVKFT K+DAENAIQK NG+  GKRPIAVDWAVPK
Sbjct: 283 FSSAGFVWDAFIPQNSETGLSRGFAFVKFTSKQDAENAIQKFNGEKIGKRPIAVDWAVPK 342

Query: 194 KLFTAGADTVDVPK--------GRGSDTA--FESDTGSETSQPFHAE--DSIPEDANATD 51
           K++  GA+ V   +        G G   +   E DT    ++  H +   S P+D+N T+
Sbjct: 343 KIYITGANPVVASEDGQLNGRDGEGDTDSDDLEDDTTDIDNKVPHPQGVGSAPDDSNTTE 402

Query: 50  SVEVPNNKVDLEEETN 3
             EV   + D  EE +
Sbjct: 403 K-EVMPTEFDFNEEAD 417


>ref|XP_002274081.1| PREDICTED: uncharacterized protein LOC100257200 [Vitis vinifera]
          Length = 972

 Score =  312 bits (800), Expect = 4e-83
 Identities = 162/256 (63%), Positives = 194/256 (75%), Gaps = 12/256 (4%)
 Frame = -1

Query: 734 KQKVARTVVFGGLLNADMAEEVLCRAKEVGTVCSITYPLPKEELELNGLAQDGCRMDGAA 555
           KQ+VARTV+FGGLLNADMAE V  RA+EVGTVCS+TYPLPKEELE +GL+QDGC++D +A
Sbjct: 182 KQRVARTVIFGGLLNADMAEVVHLRAREVGTVCSVTYPLPKEELEHHGLSQDGCKIDASA 241

Query: 554 VLYESVKAARASVGVLHQQKVKGGLVWARQLGGEGSKTQKWKLIVRNLPFKATVNEIRIL 375
           VLY SVK A ASV +LHQ+++KGG+VWARQLGGEGSKTQKWKLIVRNLPFKA V EI+ +
Sbjct: 242 VLYSSVKEAHASVAMLHQKEIKGGIVWARQLGGEGSKTQKWKLIVRNLPFKAKVTEIKDI 301

Query: 374 FSSAGFVWDVFIPNNSETGLSKGFGFVKFTCKKDAENAIQKVNGQTFGKRPIAVDWAVPK 195
           FSSAGFVWD FIP NSETGLS+GF FVKFT K+DAENAIQK NG+  GKRPIAVDWAVPK
Sbjct: 302 FSSAGFVWDAFIPQNSETGLSRGFAFVKFTSKQDAENAIQKFNGEKIGKRPIAVDWAVPK 361

Query: 194 KLFTAGADTVDVPK--------GRGSDTA--FESDTGSETSQPFHAE--DSIPEDANATD 51
           K++  GA+ V   +        G G   +   E DT    ++  H +   S P+D+N T+
Sbjct: 362 KIYITGANPVVASEDGQLNGRDGEGDTDSDDLEDDTTDIDNKVPHPQGVGSAPDDSNTTE 421

Query: 50  SVEVPNNKVDLEEETN 3
             EV   + D  EE +
Sbjct: 422 K-EVMPTEFDFNEEAD 436


>ref|XP_002313773.1| predicted protein [Populus trichocarpa] gi|222850181|gb|EEE87728.1|
           predicted protein [Populus trichocarpa]
          Length = 974

 Score =  300 bits (769), Expect = 2e-79
 Identities = 148/230 (64%), Positives = 179/230 (77%)
 Frame = -1

Query: 734 KQKVARTVVFGGLLNADMAEEVLCRAKEVGTVCSITYPLPKEELELNGLAQDGCRMDGAA 555
           KQ+VARTV+FGGLLN  MAE+V  RAKE GTVCS+TYPLPKEEL+ +GL QDGCR   +A
Sbjct: 180 KQRVARTVIFGGLLNDAMAEDVHQRAKETGTVCSVTYPLPKEELKKHGLEQDGCRSGASA 239

Query: 554 VLYESVKAARASVGVLHQQKVKGGLVWARQLGGEGSKTQKWKLIVRNLPFKATVNEIRIL 375
           VL+ SVK AR+SV +LHQ+++KGG+VWARQLGGEG KTQKWKLI+RNLPFKA  NEI+ +
Sbjct: 240 VLFTSVKEARSSVAMLHQKEIKGGIVWARQLGGEGCKTQKWKLIIRNLPFKAKPNEIKGV 299

Query: 374 FSSAGFVWDVFIPNNSETGLSKGFGFVKFTCKKDAENAIQKVNGQTFGKRPIAVDWAVPK 195
           F SAG VWDVF+P+NSETGLSKGF FVKFTCK+DAENAIQK NGQ FGKRPIAVDWAVPK
Sbjct: 300 FESAGCVWDVFVPHNSETGLSKGFAFVKFTCKQDAENAIQKFNGQKFGKRPIAVDWAVPK 359

Query: 194 KLFTAGADTVDVPKGRGSDTAFESDTGSETSQPFHAEDSIPEDANATDSV 45
           K++++GA+     +   +    +++  S         D   ED N TD +
Sbjct: 360 KIYSSGANVSAASEDGNASAGHQNEKDSSCED----SDYDDEDDNDTDVI 405


>ref|NP_565513.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
           gi|4567275|gb|AAD23688.1| expressed protein [Arabidopsis
           thaliana] gi|16604631|gb|AAL24108.1| unknown protein
           [Arabidopsis thaliana] gi|27754736|gb|AAO22811.1|
           unknown protein [Arabidopsis thaliana]
           gi|330252084|gb|AEC07178.1| RNA recognition
           motif-containing protein [Arabidopsis thaliana]
          Length = 1003

 Score =  287 bits (734), Expect = 2e-75
 Identities = 144/240 (60%), Positives = 176/240 (73%), Gaps = 3/240 (1%)
 Frame = -1

Query: 734 KQKVARTVVFGGLLNADMAEEVLCRAKEVGTVCSITYPLPKEELELNGLAQDGCRMDGAA 555
           KQ+VARTV+FGGL NA+MAE V  R KE+GTVCS+ YPLPKEEL+ NGL QDGCR + +A
Sbjct: 231 KQRVARTVIFGGLANAEMAEVVHSRVKEIGTVCSVRYPLPKEELQQNGLTQDGCRAEASA 290

Query: 554 VLYESVKAARASVGVLHQQKVKGGLVWARQLGGEGSKTQKWKLIVRNLPFKATVNEIRIL 375
           VL+ SVK+A A+V  LHQ +VKG L+WARQLGGEGSK QKWKLI+RNLPF+A  ++I+++
Sbjct: 291 VLFTSVKSACAAVAKLHQTEVKGNLIWARQLGGEGSKAQKWKLIIRNLPFQAKPSDIKVV 350

Query: 374 FSSAGFVWDVFIPNNSETGLSKGFGFVKFTCKKDAENAIQKVNGQTFGKRPIAVDWAVPK 195
           FS+ GFVWDVFIP N ETGL KGF FVKFTCKKDA NAI+K NG  FGKRPIAVDWAVPK
Sbjct: 351 FSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAANAIKKFNGHMFGKRPIAVDWAVPK 410

Query: 194 KLFTAGADTVDVPKG---RGSDTAFESDTGSETSQPFHAEDSIPEDANATDSVEVPNNKV 24
            ++   AD           GSD   E ++  +  +   A +S P   + TD  E  +NK+
Sbjct: 411 NIYNGAADATTASADGDKEGSDGDSE-NSSVDLEEVDEAVESHPPPGDDTDDDEDGSNKL 469


>ref|XP_002880379.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
           lyrata] gi|297326218|gb|EFH56638.1| RNA recognition
           motif-containing protein [Arabidopsis lyrata subsp.
           lyrata]
          Length = 988

 Score =  284 bits (727), Expect = 1e-74
 Identities = 145/235 (61%), Positives = 172/235 (73%), Gaps = 4/235 (1%)
 Frame = -1

Query: 734 KQKVARTVVFGGLLNADMAEEVLCRAKEVGTVCSITYPLPKEELELNGLAQDGCRMDGAA 555
           KQ+VARTV+FGGL NA+MAE V  R KE+GTVCS+ YPLPKEEL+ NGL QDGCR + +A
Sbjct: 213 KQRVARTVIFGGLANAEMAEVVHSRVKEIGTVCSVRYPLPKEELQQNGLTQDGCRAEASA 272

Query: 554 VLYESVKAARASVGVLHQQKVKGGLVWARQLGGEGSKTQKWKLIVRNLPFKATVNEIRIL 375
           VL+ SVK+A A V  LHQ ++KG L+WARQLGGEGSK QKWKLI+RNLPF+A  ++I+ +
Sbjct: 273 VLFTSVKSACAVVAKLHQTEIKGNLIWARQLGGEGSKAQKWKLIIRNLPFQAKPSDIKEV 332

Query: 374 FSSAGFVWDVFIPNNSETGLSKGFGFVKFTCKKDAENAIQKVNGQTFGKRPIAVDWAVPK 195
           FS+ GFVWDVFIP N ETGL KGF FVKFTCKKDAENAIQ  NG  FGKRPIAVDWAVPK
Sbjct: 333 FSAVGFVWDVFIPKNFETGLPKGFAFVKFTCKKDAENAIQMFNGHMFGKRPIAVDWAVPK 392

Query: 194 KLFTAGADTVDVPKG---RGSDTAFESDTGS-ETSQPFHAEDSIPEDANATDSVE 42
            L+   AD          +GSD   +SD  S +  +   A +S P   + TD  E
Sbjct: 393 NLYNGAADATTASADGDQKGSDG--DSDNSSVDLEEVDDAVESHPPSGDDTDDEE 445