BLASTX nr result
ID: Coptis23_contig00002281
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00002281
(1180 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCH50966.1| T4.5 [Malus x robusta] 208 3e-79
emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera] 170 1e-63
dbj|BAM42650.1| Polyprotein [Arabidopsis thaliana] 154 2e-63
dbj|BAM42646.1| polyprotein [Arabidopsis thaliana] 154 2e-63
gb|AAC79110.1| putative polyprotein of LTR transposon [Arabidops... 154 2e-63
>emb|CCH50966.1| T4.5 [Malus x robusta]
Length = 1670
Score = 208 bits (529), Expect(2) = 3e-79
Identities = 103/181 (56%), Positives = 134/181 (74%), Gaps = 4/181 (2%)
Frame = +1
Query: 325 GTIDHGLWITKSPLSIQCFTDADWAGCPMDRRSITGFSVYLGSNLLYWSAKN----ARSS 492
GT+D GLW TK + ++DADWAGCP+DRRS +G+ V+LGSNL+ WSAK ARSS
Sbjct: 1482 GTVDLGLWFTKGSQCLTAWSDADWAGCPVDRRSTSGYCVFLGSNLISWSAKKQATVARSS 1541
Query: 493 IEAEYRALAHTAAKLYWICLLLQDLRIPLYSPPLIHCDNISAIALANNHVFHARTKHVEI 672
EAEYR+LA+TAA++ W+C +L D+ PL P+I+CDN S IALA N VFHARTKHVEI
Sbjct: 1542 TEAEYRSLANTAAEITWVCKILHDISFPLLKTPVIYCDNKSVIALAFNPVFHARTKHVEI 1601
Query: 673 DYHYIRELVTKKLIDVQYLNTKDQLADMFTKALSSSRFKQLSTKLSVRQSAFSLKEGIKP 852
DYHYIRE V I VQ++ + Q+AD+FTK L++ RF L++KLSVR +FSL+ +K
Sbjct: 1602 DYHYIREKVLLGHIGVQHVASLLQIADIFTKPLAADRFAALTSKLSVRSPSFSLRGCVKS 1661
Query: 853 L 855
+
Sbjct: 1662 I 1662
Score = 114 bits (286), Expect(2) = 3e-79
Identities = 56/98 (57%), Positives = 71/98 (72%)
Frame = +2
Query: 2 LHYFLRLEAQRDSSGLFLSQTKYTYDLLSKANMLQAKPYSTPFSTSCTLDNHTGEPLADP 181
++YFL +E + GL L Q KY DLL K +ML AKP +TP STS LD H+G L+DP
Sbjct: 1374 INYFLGIEVHKSDQGLLLHQAKYALDLLKKTDMLGAKPCATPVSTS-KLD-HSGTLLSDP 1431
Query: 182 TEFKSIVGALQYLVWTRPDIAFSVNVVCQFMHNPRAPH 295
T ++S VGALQYL WTRPD+AF+VN VCQ+MH+P+ H
Sbjct: 1432 TSYRSTVGALQYLTWTRPDLAFAVNQVCQYMHSPQTIH 1469
>emb|CAN67403.1| hypothetical protein VITISV_025614 [Vitis vinifera]
Length = 1271
Score = 170 bits (430), Expect(2) = 1e-63
Identities = 88/176 (50%), Positives = 122/176 (69%), Gaps = 5/176 (2%)
Frame = +1
Query: 325 GTIDHGLWITKSP-LSIQCFTDADWAGCPMDRRSITGFSVYLGSNLLYWSAKN----ARS 489
GT+ +G+ + +S L I +TDADWA CP DRRS G+ ++LG NL+ WS+ +RS
Sbjct: 1048 GTLSYGIQMQQSTSLDIHGYTDADWASCPDDRRSTGGYGIFLGPNLVSWSSNKQKVVSRS 1107
Query: 490 SIEAEYRALAHTAAKLYWICLLLQDLRIPLYSPPLIHCDNISAIALANNHVFHARTKHVE 669
S E+EYRALA +++ WI +LQ+L + SPPL+ CDN SA LA N VFHARTKH+E
Sbjct: 1108 SAESEYRALASATSEMIWIQYVLQELCLSSSSPPLLWCDNKSAAHLAANPVFHARTKHIE 1167
Query: 670 IDYHYIRELVTKKLIDVQYLNTKDQLADMFTKALSSSRFKQLSTKLSVRQSAFSLK 837
+D H+IR+ V +K + +QYL + +Q+AD+FTK +SSS+F TKLSV S SL+
Sbjct: 1168 MDLHFIRDHVLRKQLVIQYLPSAEQVADIFTKHISSSQFLSFRTKLSVVPSPVSLR 1223
Score = 101 bits (251), Expect(2) = 1e-63
Identities = 50/104 (48%), Positives = 68/104 (65%)
Frame = +2
Query: 2 LHYFLRLEAQRDSSGLFLSQTKYTYDLLSKANMLQAKPYSTPFSTSCTLDNHTGEPLADP 181
++YFL +E R + LSQ KYT DLLS+ ML +KP +TP TL + GEP +D
Sbjct: 938 VNYFLGIEVVRSGTMFHLSQHKYTQDLLSRTAMLDSKPATTPGLLGQTLSHLDGEPFSDA 997
Query: 182 TEFKSIVGALQYLVWTRPDIAFSVNVVCQFMHNPRAPHYISLAK 313
T ++S VGALQYL TRPDI+F+VN CQFM P H++++ +
Sbjct: 998 TLYRSTVGALQYLTLTRPDISFAVNKACQFMATPTTTHWLAVKR 1041
>dbj|BAM42650.1| Polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 154 bits (388), Expect(2) = 2e-63
Identities = 79/168 (47%), Positives = 110/168 (65%), Gaps = 5/168 (2%)
Frame = +1
Query: 325 GTIDHGLWITK-SPLSIQCFTDADWAGCPMDRRSITGFSVYLGSNLLYWSAKN----ARS 489
GT DHG+++ K + LS+ ++DADWAG D S G+ VYLG + + WS+K RS
Sbjct: 1295 GTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRS 1354
Query: 490 SIEAEYRALAHTAAKLYWICLLLQDLRIPLYSPPLIHCDNISAIALANNHVFHARTKHVE 669
S EAEYR++A+T+++L WIC LL +L I L PP+I+CDN+ A L N VFH+R KH+
Sbjct: 1355 STEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIA 1414
Query: 670 IDYHYIRELVTKKLIDVQYLNTKDQLADMFTKALSSSRFKQLSTKLSV 813
+DYH+IR V + V +++T DQLAD TK LS F+ S K+ V
Sbjct: 1415 LDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGV 1462
Score = 116 bits (291), Expect(2) = 2e-63
Identities = 55/104 (52%), Positives = 76/104 (73%)
Frame = +2
Query: 2 LHYFLRLEAQRDSSGLFLSQTKYTYDLLSKANMLQAKPYSTPFSTSCTLDNHTGEPLADP 181
LHYFL +EA+R GL LSQ +YT DLL++ NML AKP +TP +TS L H+G L DP
Sbjct: 1185 LHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDP 1244
Query: 182 TEFKSIVGALQYLVWTRPDIAFSVNVVCQFMHNPRAPHYISLAK 313
TE++ IVG+LQYL +TRPD++++VN + Q+MH P H+ +L +
Sbjct: 1245 TEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKR 1288
>dbj|BAM42646.1| polyprotein [Arabidopsis thaliana]
Length = 1475
Score = 154 bits (388), Expect(2) = 2e-63
Identities = 79/168 (47%), Positives = 110/168 (65%), Gaps = 5/168 (2%)
Frame = +1
Query: 325 GTIDHGLWITK-SPLSIQCFTDADWAGCPMDRRSITGFSVYLGSNLLYWSAKN----ARS 489
GT DHG+++ K + LS+ ++DADWAG D S G+ VYLG + + WS+K RS
Sbjct: 1295 GTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRS 1354
Query: 490 SIEAEYRALAHTAAKLYWICLLLQDLRIPLYSPPLIHCDNISAIALANNHVFHARTKHVE 669
S EAEYR++A+T+++L WIC LL +L I L PP+I+CDN+ A L N VFH+R KH+
Sbjct: 1355 STEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIA 1414
Query: 670 IDYHYIRELVTKKLIDVQYLNTKDQLADMFTKALSSSRFKQLSTKLSV 813
+DYH+IR V + V +++T DQLAD TK LS F+ S K+ V
Sbjct: 1415 LDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGV 1462
Score = 116 bits (291), Expect(2) = 2e-63
Identities = 55/104 (52%), Positives = 76/104 (73%)
Frame = +2
Query: 2 LHYFLRLEAQRDSSGLFLSQTKYTYDLLSKANMLQAKPYSTPFSTSCTLDNHTGEPLADP 181
LHYFL +EA+R GL LSQ +YT DLL++ NML AKP +TP +TS L H+G L DP
Sbjct: 1185 LHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDP 1244
Query: 182 TEFKSIVGALQYLVWTRPDIAFSVNVVCQFMHNPRAPHYISLAK 313
TE++ IVG+LQYL +TRPD++++VN + Q+MH P H+ +L +
Sbjct: 1245 TEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKR 1288
>gb|AAC79110.1| putative polyprotein of LTR transposon [Arabidopsis thaliana]
gi|7269781|emb|CAB77781.1| putative polyprotein of LTR
transposon [Arabidopsis thaliana]
Length = 1456
Score = 154 bits (388), Expect(2) = 2e-63
Identities = 79/168 (47%), Positives = 110/168 (65%), Gaps = 5/168 (2%)
Frame = +1
Query: 325 GTIDHGLWITK-SPLSIQCFTDADWAGCPMDRRSITGFSVYLGSNLLYWSAKN----ARS 489
GT DHG+++ K + LS+ ++DADWAG D S G+ VYLG + + WS+K RS
Sbjct: 1276 GTPDHGIFLKKGNTLSLHAYSDADWAGDTDDYVSTNGYIVYLGHHPISWSSKKQKGVVRS 1335
Query: 490 SIEAEYRALAHTAAKLYWICLLLQDLRIPLYSPPLIHCDNISAIALANNHVFHARTKHVE 669
S EAEYR++A+T+++L WIC LL +L I L PP+I+CDN+ A L N VFH+R KH+
Sbjct: 1336 STEAEYRSVANTSSELQWICSLLTELGIQLSHPPVIYCDNVGATYLCANPVFHSRMKHIA 1395
Query: 670 IDYHYIRELVTKKLIDVQYLNTKDQLADMFTKALSSSRFKQLSTKLSV 813
+DYH+IR V + V +++T DQLAD TK LS F+ S K+ V
Sbjct: 1396 LDYHFIRNQVQSGALRVVHVSTHDQLADTLTKPLSRVAFQNFSRKIGV 1443
Score = 116 bits (291), Expect(2) = 2e-63
Identities = 55/104 (52%), Positives = 76/104 (73%)
Frame = +2
Query: 2 LHYFLRLEAQRDSSGLFLSQTKYTYDLLSKANMLQAKPYSTPFSTSCTLDNHTGEPLADP 181
LHYFL +EA+R GL LSQ +YT DLL++ NML AKP +TP +TS L H+G L DP
Sbjct: 1166 LHYFLGIEAKRVPQGLHLSQRRYTLDLLARTNMLTAKPVATPMATSPKLTLHSGTKLPDP 1225
Query: 182 TEFKSIVGALQYLVWTRPDIAFSVNVVCQFMHNPRAPHYISLAK 313
TE++ IVG+LQYL +TRPD++++VN + Q+MH P H+ +L +
Sbjct: 1226 TEYRGIVGSLQYLAFTRPDLSYAVNRLSQYMHMPTDDHWNALKR 1269