BLASTX nr result

ID: Coptis23_contig00002267 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00002267
         (284 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002314126.1| predicted protein [Populus trichocarpa] gi|2...    78   6e-13
ref|XP_002280779.2| PREDICTED: uncharacterized protein LOC100246...    77   1e-12
emb|CAN63579.1| hypothetical protein VITISV_029585 [Vitis vinifera]    77   1e-12
gb|EAY89362.1| hypothetical protein OsI_10866 [Oryza sativa Indi...    76   2e-12
gb|ABF95136.1| RNA recognition motif family protein, expressed [...    76   2e-12

>ref|XP_002314126.1| predicted protein [Populus trichocarpa] gi|222850534|gb|EEE88081.1|
           predicted protein [Populus trichocarpa]
          Length = 316

 Score = 78.2 bits (191), Expect = 6e-13
 Identities = 40/64 (62%), Positives = 47/64 (73%), Gaps = 11/64 (17%)
 Frame = +2

Query: 122 VVDPWTRETRGFGFVTMSTVKEAN-----------QGRVITVEKAXXXXXXTPTPGRYVG 268
           VVDPWTRE+RGFGFVTMSTV+EA+           +GRVITVEKA      TPTPGRY+G
Sbjct: 84  VVDPWTRESRGFGFVTMSTVEEADHCIKYLDRSVLEGRVITVEKAKRKRGRTPTPGRYLG 143

Query: 269 LKSI 280
           L++I
Sbjct: 144 LRTI 147


>ref|XP_002280779.2| PREDICTED: uncharacterized protein LOC100246735 [Vitis vinifera]
          Length = 330

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 11/64 (17%)
 Frame = +2

Query: 122 VVDPWTRETRGFGFVTMSTVKEAN-----------QGRVITVEKAXXXXXXTPTPGRYVG 268
           V DPWTRE+RGFGFVTMSTV+EAN           +GRVITVEKA      TPTPG+Y+G
Sbjct: 81  VTDPWTRESRGFGFVTMSTVEEANRCIKYLDRSVLEGRVITVEKARRRRGRTPTPGKYLG 140

Query: 269 LKSI 280
           L+++
Sbjct: 141 LRTV 144


>emb|CAN63579.1| hypothetical protein VITISV_029585 [Vitis vinifera]
          Length = 241

 Score = 77.0 bits (188), Expect = 1e-12
 Identities = 38/64 (59%), Positives = 46/64 (71%), Gaps = 11/64 (17%)
 Frame = +2

Query: 122 VVDPWTRETRGFGFVTMSTVKEAN-----------QGRVITVEKAXXXXXXTPTPGRYVG 268
           V DPWTRE+RGFGFVTMSTV+EAN           +GRVITVEKA      TPTPG+Y+G
Sbjct: 81  VTDPWTRESRGFGFVTMSTVEEANRCIKYLDRSVLEGRVITVEKARRRRGRTPTPGKYLG 140

Query: 269 LKSI 280
           L+++
Sbjct: 141 LRTV 144


>gb|EAY89362.1| hypothetical protein OsI_10866 [Oryza sativa Indica Group]
          Length = 324

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 39/63 (61%), Positives = 45/63 (71%), Gaps = 11/63 (17%)
 Frame = +2

Query: 122 VVDPWTRETRGFGFVTMSTVKEAN-----------QGRVITVEKAXXXXXXTPTPGRYVG 268
           V+DPWTRE+RGFGFVTM+TVKEA+           +GRVITVEKA      TPTPGRY+G
Sbjct: 52  VLDPWTRESRGFGFVTMATVKEADLCIKYLDRSVLEGRVITVEKAKRRRGRTPTPGRYLG 111

Query: 269 LKS 277
            KS
Sbjct: 112 TKS 114


>gb|ABF95136.1| RNA recognition motif family protein, expressed [Oryza sativa
           Japonica Group]
          Length = 347

 Score = 76.3 bits (186), Expect = 2e-12
 Identities = 39/63 (61%), Positives = 45/63 (71%), Gaps = 11/63 (17%)
 Frame = +2

Query: 122 VVDPWTRETRGFGFVTMSTVKEAN-----------QGRVITVEKAXXXXXXTPTPGRYVG 268
           V+DPWTRE+RGFGFVTM+TVKEA+           +GRVITVEKA      TPTPGRY+G
Sbjct: 75  VLDPWTRESRGFGFVTMATVKEADLCIKYLDRSVLEGRVITVEKAKRRRGRTPTPGRYLG 134

Query: 269 LKS 277
            KS
Sbjct: 135 TKS 137


Top