BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00002233
         (345 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_194809.1| 40S ribosomal protein S11-2 [Arabidopsis thalia...   196   2e-48
ref|XP_002869362.1| 40S ribosomal protein S11 [Arabidopsis lyrat...   193   1e-47
ref|NP_001060007.1| Os07g0565000 [Oryza sativa Japonica Group] g...   192   3e-47
ref|XP_003589042.1| 40S ribosomal protein S11 [Medicago truncatu...   192   3e-47
ref|XP_002454168.1| hypothetical protein SORBIDRAFT_04g025870 [S...   191   4e-47

>ref|NP_194809.1| 40S ribosomal protein S11-2 [Arabidopsis thaliana]
           gi|11134432|sp|O65569.2|RS112_ARATH RecName: Full=40S
           ribosomal protein S11-2 gi|5708091|emb|CAA18213.2|
           ribosomal protein S11-like [Arabidopsis thaliana]
           gi|7269981|emb|CAB79798.1| ribosomal protein S11-like
           [Arabidopsis thaliana] gi|15028245|gb|AAK76711.1|
           putative ribosomal protein S11 [Arabidopsis thaliana]
           gi|20258899|gb|AAM14143.1| putative ribosomal protein
           S11 [Arabidopsis thaliana] gi|332660410|gb|AEE85810.1|
           40S ribosomal protein S11-2 [Arabidopsis thaliana]
          Length = 159

 Score =  196 bits (497), Expect = 2e-48
 Identities = 92/100 (92%), Positives = 96/100 (96%)
 Frame = +2

Query: 2   PREAIEGTYIDKKCPFVGDVSIRGRIISGICHSAKMVRTIIVRRDYLHFVKKYQRYEKRH 181
           PREAIEGTYID+KCPF G VSIRGRI+SG CHSAKM RTIIVRRDYLHFVKKY+RYEKRH
Sbjct: 46  PREAIEGTYIDQKCPFTGTVSIRGRILSGTCHSAKMQRTIIVRRDYLHFVKKYRRYEKRH 105

Query: 182 SNIPAHVSPCFRVKEGDRVTIGQCRPLSKTVRFNVLKVVP 301
           SNIPAHVSPCFRVKEGDRVTIGQCRPLSKTVRFNVLKV+P
Sbjct: 106 SNIPAHVSPCFRVKEGDRVTIGQCRPLSKTVRFNVLKVIP 145


>ref|XP_002869362.1| 40S ribosomal protein S11 [Arabidopsis lyrata subsp. lyrata]
           gi|297315198|gb|EFH45621.1| 40S ribosomal protein S11
           [Arabidopsis lyrata subsp. lyrata]
          Length = 159

 Score =  193 bits (491), Expect = 1e-47
 Identities = 90/100 (90%), Positives = 94/100 (94%)
 Frame = +2

Query: 2   PREAIEGTYIDKKCPFVGDVSIRGRIISGICHSAKMVRTIIVRRDYLHFVKKYQRYEKRH 181
           PREAIEG Y+DKKCPF G VSIRGRI++G CHSAKM RTIIVRRDYLHFVKKYQRYEKRH
Sbjct: 46  PREAIEGAYVDKKCPFTGTVSIRGRILAGTCHSAKMQRTIIVRRDYLHFVKKYQRYEKRH 105

Query: 182 SNIPAHVSPCFRVKEGDRVTIGQCRPLSKTVRFNVLKVVP 301
           SNIPAHVSPCFRVKEGD VTIGQCRPLSKTVRFNVLKV+P
Sbjct: 106 SNIPAHVSPCFRVKEGDHVTIGQCRPLSKTVRFNVLKVIP 145


>ref|NP_001060007.1| Os07g0565000 [Oryza sativa Japonica Group]
           gi|297603343|ref|NP_001053856.2| Os04g0613600 [Oryza
           sativa Japonica Group] gi|313103641|pdb|3IZ6|P Chain P,
           Localization Of The Small Subunit Ribosomal Proteins
           Into A 5.5 A Cryo-Em Map Of Triticum Aestivum
           Translating 80s Ribosome gi|33146750|dbj|BAC79661.1|
           putative 40S ribosomal protein S11 [Oryza sativa
           Japonica Group] gi|50508298|dbj|BAD30107.1| putative 40S
           ribosomal protein S11 [Oryza sativa Japonica Group]
           gi|113611543|dbj|BAF21921.1| Os07g0565000 [Oryza sativa
           Japonica Group] gi|215768067|dbj|BAH00296.1| unnamed
           protein product [Oryza sativa Japonica Group]
           gi|218195559|gb|EEC77986.1| hypothetical protein
           OsI_17372 [Oryza sativa Indica Group]
           gi|222637292|gb|EEE67424.1| hypothetical protein
           OsJ_24764 [Oryza sativa Japonica Group]
           gi|255675771|dbj|BAF15770.2| Os04g0613600 [Oryza sativa
           Japonica Group]
          Length = 161

 Score =  192 bits (487), Expect = 3e-47
 Identities = 91/100 (91%), Positives = 94/100 (94%)
 Frame = +2

Query: 2   PREAIEGTYIDKKCPFVGDVSIRGRIISGICHSAKMVRTIIVRRDYLHFVKKYQRYEKRH 181
           PREAIEGTYIDKKCPF G VSIRGRII+G CHSAKM RTIIVRR+YLHFVKKYQRYEKRH
Sbjct: 46  PREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRH 105

Query: 182 SNIPAHVSPCFRVKEGDRVTIGQCRPLSKTVRFNVLKVVP 301
           SNIPAHVSPCFRVKEGD V IGQCRPLSKTVRFNVLKV+P
Sbjct: 106 SNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP 145


>ref|XP_003589042.1| 40S ribosomal protein S11 [Medicago truncatula]
           gi|355478090|gb|AES59293.1| 40S ribosomal protein S11
           [Medicago truncatula]
          Length = 161

 Score =  192 bits (487), Expect = 3e-47
 Identities = 89/100 (89%), Positives = 95/100 (95%)
 Frame = +2

Query: 2   PREAIEGTYIDKKCPFVGDVSIRGRIISGICHSAKMVRTIIVRRDYLHFVKKYQRYEKRH 181
           PREAIEGTYIDKKCPF G+VSIRGRIISG CHSAKM +TI+VRR+YLHF+KKYQRYEKRH
Sbjct: 46  PREAIEGTYIDKKCPFTGNVSIRGRIISGTCHSAKMNKTIVVRRNYLHFIKKYQRYEKRH 105

Query: 182 SNIPAHVSPCFRVKEGDRVTIGQCRPLSKTVRFNVLKVVP 301
           SNIPAHVSPCFRVKEGD V IGQCRPLSKTVRFNVLKV+P
Sbjct: 106 SNIPAHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP 145


>ref|XP_002454168.1| hypothetical protein SORBIDRAFT_04g025870 [Sorghum bicolor]
           gi|242076386|ref|XP_002448129.1| hypothetical protein
           SORBIDRAFT_06g021750 [Sorghum bicolor]
           gi|241933999|gb|EES07144.1| hypothetical protein
           SORBIDRAFT_04g025870 [Sorghum bicolor]
           gi|241939312|gb|EES12457.1| hypothetical protein
           SORBIDRAFT_06g021750 [Sorghum bicolor]
          Length = 160

 Score =  191 bits (486), Expect = 4e-47
 Identities = 90/100 (90%), Positives = 94/100 (94%)
 Frame = +2

Query: 2   PREAIEGTYIDKKCPFVGDVSIRGRIISGICHSAKMVRTIIVRRDYLHFVKKYQRYEKRH 181
           PREAIEGTYIDKKCPF G VSIRGRII+G CHSAKM RTIIVRR+YLHFVKKYQRYEKRH
Sbjct: 46  PREAIEGTYIDKKCPFTGTVSIRGRIIAGTCHSAKMNRTIIVRRNYLHFVKKYQRYEKRH 105

Query: 182 SNIPAHVSPCFRVKEGDRVTIGQCRPLSKTVRFNVLKVVP 301
           SNIPAH+SPCFRVKEGD V IGQCRPLSKTVRFNVLKV+P
Sbjct: 106 SNIPAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIP 145