BLASTX nr result
ID: Coptis23_contig00002169
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00002169
(1924 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|1337118... 506 e-141
emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group] 504 e-140
gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group] 488 e-135
gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subc... 488 e-135
gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-... 486 e-135
>gb|ABO36622.1| copia LTR rider [Solanum lycopersicum] gi|133711819|gb|ABO36636.1|
copia LTR rider [Solanum lycopersicum]
Length = 1307
Score = 506 bits (1304), Expect = e-141
Identities = 257/589 (43%), Positives = 367/589 (62%), Gaps = 2/589 (0%)
Frame = -3
Query: 1763 MSNARFEVEKFNGKNNFGIWQVQVKDILIQQGLHKALKGIKSKAASMSNDDWEEFDLQAC 1584
MS +++KF G+N+F +WQ++++ +L QQG L K+ + EE +A
Sbjct: 1 MSALNVKIDKFTGRNSFSLWQIKMRALLKQQGFWAPLSKDKNAVVTPEMAILEE---KAH 57
Query: 1583 SSIRLCLANEVMYSVMGENTAAGIWLKLESMYMTKSMTNKMYLKKRLYRYMMVDGSTMQE 1404
S+I LCLA++V+ V E TAAG+WLKLES+YMTKS+TNK+ LK+RL+ M +G+ ++E
Sbjct: 58 STIMLCLADDVITEVSDEETAAGLWLKLESLYMTKSLTNKLLLKQRLFGLRMAEGTQLRE 117
Query: 1403 HVSEFRRRLADYLNVGMKMDDEDQAACLIFSLPESYEHLMTTFM-NREVVDLDEVQSALL 1227
H+ + L + N+ +K++DED A L+ SLP S+E+ + +F+ ++ V L+EV+SAL
Sbjct: 118 HLEQLNTLLLELRNIDVKIEDEDAALILLVSLPMSFENFVQSFIVGKDTVSLEEVRSALH 177
Query: 1226 SYELMKKTRVENSIDAGQGLVARGNSSEQXXXXXXXXXXXXXKPLKHVQCYNCNEKGHYA 1047
S EL K ++ GL + KP C C EKGH+
Sbjct: 178 SRELRHKANGTSTDIQPSGLFTSSRKGRKNGGKKNKPMSKGAKP--DDVCNYCKEKGHWK 235
Query: 1046 SNCPHPKKENKRDGQKKGKAKIEANYASGSEEDEFSLCVSTQDYMTERWILDSGCSYHMC 867
+CP KK++++ A+ + N E++ +L + ++ W+LDSG SYH+C
Sbjct: 236 FDCPKKKKQSEKQSVSAAVAEEDTN-----SEEDIALVADEHTHHSDVWVLDSGASYHIC 290
Query: 866 PNRKWFTSYESIDGGSVLMGNDVACKTVGIGTIRVKMHDGVVRTLTDVRHVPELKKSLIS 687
P R+WFT+YE +DGGS+ M N CK VG G+I+++ HDG TL +VRHVP + K+LIS
Sbjct: 291 PRREWFTTYEQVDGGSISMANSSVCKVVGTGSIKIRTHDGSFCTLNEVRHVPLMTKNLIS 350
Query: 686 LGTLDSKGHKFVGEGGVLNIVNGSLVVMKGQKYGTLYTLIGSMVIDDVAVGACS-NDSEC 510
L LDSKG + G+ GVL + GS +++KG GTLY L GS V V + + +
Sbjct: 351 LSLLDSKGFSWSGKDGVLRVWKGSNLILKGVMRGTLYFLQGSTVTGSAHVASSEFHQKDM 410
Query: 509 TKMWHMRLGHMSEKGLSELCKRGFLKNLKKPSMGFCEHCVYGKQCRVKFKSSKHTTTGIL 330
TK+WH+RLGHM E+G+ L K L K S+ FCEHCV+GK R KF + H T G L
Sbjct: 411 TKLWHIRLGHMGERGMQILSKEDLLAGHKVKSLEFCEHCVFGKLHRNKFPKAIHRTKGTL 470
Query: 329 DYVHTDVWGPSRVASKGGNRYYVSFIDDHTRYVWVYMMKSKDEVFETFKKWKARVENRTD 150
DY+H+D WGP RV S GG R++VS IDD++R WVYMMK K E F+ FK+WK +EN+T
Sbjct: 471 DYIHSDCWGPCRVESLGGCRFFVSIIDDYSRMTWVYMMKHKSEAFQKFKEWKILMENQTG 530
Query: 149 RKVKTLRSDNGTEYTYGPFQEFCAQQGIARHWTVRGTPQQNGMAERMNR 3
+K+K LR+DNG E+ + F +FC +GIARH TVR TPQQNG+AERMN+
Sbjct: 531 KKIKRLRTDNGLEFCWSEFDQFCKDEGIARHRTVRNTPQQNGVAERMNQ 579
>emb|CAD41912.2| OSJNBa0033G05.13 [Oryza sativa Japonica Group]
Length = 1181
Score = 504 bits (1297), Expect = e-140
Identities = 264/606 (43%), Positives = 380/606 (62%), Gaps = 19/606 (3%)
Frame = -3
Query: 1763 MSNARFEVEKFNGKNNFGIWQVQVKDILIQQGLHKALKGIKSKAASMSNDDWEEFDLQAC 1584
M++ ++++ + F +WQV+++ +L QQ L AL G + SND+ ++ D +A
Sbjct: 1 MTSLKYDLPLLDRDTRFSLWQVKMRAVLAQQELDDALSGFDKRTQDWSNDE-KKRDRKAM 59
Query: 1583 SSIRLCLANEVMYSVMGENTAAGIWLKLESMYMTKSMTNKMYLKKRLYRYMMVDGSTMQE 1404
S I L L+N ++ V+ E TAAG+WLKLE + MTK +T+KM+LK++L+ + + D ++ +
Sbjct: 60 SYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMD 119
Query: 1403 HVSEFRRRLADYLNVGMKMDDEDQAACLIFSLPESYEHLMTTFM-NREVVDLDEVQSALL 1227
H+S F+ +AD ++ +K D++D A L+ SLP SY + T + +R+ + L EV AL
Sbjct: 120 HLSAFKEIVADLESMEVKYDEKDLALILLCSLPSSYANFRDTILYSRDTLTLKEVYDALH 179
Query: 1226 SYELMKK-TRVENSIDAGQGLVARGNSSEQXXXXXXXXXXXXXKPLK------HVQCYNC 1068
+ E MKK E S +GLV RG+ E+ + + C C
Sbjct: 180 AKEKMKKMVPSEGSNSQAEGLVVRGSQQEKNTNNKSRDKSSSSYRGRSKSRGRYKSCKYC 239
Query: 1067 NEKGHYASNCPHPKKENKRDGQ--KKGKAKIEANYASGSEEDE-------FSLCVSTQDY 915
GH S C + ++KR G+ KGK + E A ++E ++ C T D
Sbjct: 240 KRDGHDISKCWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSD- 298
Query: 914 MTERWILDSGCSYHMCPNRKWFTSYESIDGGSVLMGNDVACKTVGIGTIRVKMHDGVVRT 735
+WILD+ C+YHMCPNR WF +YE + GG+VLMG+D C+ GIGT+++KM DG +RT
Sbjct: 299 ---QWILDTACTYHMCPNRDWFATYEVVQGGTVLMGDDTPCEVAGIGTVQIKMFDGCIRT 355
Query: 734 LTDVRHVPELKKSLISLGTLDSKGHKFVGEGGVLNIVNGSLVVMKGQ-KYGTLYTLIGSM 558
L+DVRH+P LK+SLISL TLD KG+K+ G G+L + GSLVVMK K LY L G+
Sbjct: 356 LSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKASIKSANLYHLQGTT 415
Query: 557 VIDDVAVGACS-NDSECTKMWHMRLGHMSEKGLSELCKRGFLKNLKKPSMGFCEHCVYGK 381
++ +VA + S ++S+ T +WHMRLGHMSE GL+EL KRG L + FCEHC++GK
Sbjct: 416 ILGNVATVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRGLLDGQSISKLKFCEHCIFGK 475
Query: 380 QCRVKFKSSKHTTTGILDYVHTDVWGPSRVASKGGNRYYVSFIDDHTRYVWVYMMKSKDE 201
RVKF +S HTT GILDYVH+D+WGP+R S GG RY ++ +DD++R VW Y +K K +
Sbjct: 476 HKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQ 535
Query: 200 VFETFKKWKARVENRTDRKVKTLRSDNGTEYTYGPFQEFCAQQGIARHWTVRGTPQQNGM 21
F FK+WK VE +T+RKVK LR+DNG E+ F+ +C +GI RH+TV TPQQNG+
Sbjct: 536 AFNVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGV 595
Query: 20 AERMNR 3
AERMNR
Sbjct: 596 AERMNR 601
>gb|AAM91886.1| putative polyprotein [Oryza sativa Japonica Group]
Length = 1280
Score = 488 bits (1255), Expect = e-135
Identities = 257/605 (42%), Positives = 374/605 (61%), Gaps = 19/605 (3%)
Frame = -3
Query: 1763 MSNARFEVEKFNGKNNFGIWQVQVKDILIQQGLHKALKGIKSKAASMSNDDWEEFDLQAC 1584
M++ ++++ + F +WQV+++ +L QQ L AL G + SND+ ++ D +A
Sbjct: 36 MASLKYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEKKK-DRKAM 94
Query: 1583 SSIRLCLANEVMYSVMGENTAAGIWLKLESMYMTKSMTNKMYLKKRLYRYMMVDGSTMQE 1404
S I L L+N ++ V+ E TAAG+WLKLE + MTK +T+KM+LK++L+ + + D ++ +
Sbjct: 95 SYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMD 154
Query: 1403 HVSEFRRRLADYLNVGMKMDDEDQAACLIFSLPESYEHLMTTFM-NREVVDLDEVQSALL 1227
H+S F+ +AD ++ +K D+ED L+ SLP SY + T + + + + L EV AL
Sbjct: 155 HLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHDTLILKEVYDALH 214
Query: 1226 SYELMKK-TRVENSIDAGQGLVARGNSSEQXXXXXXXXXXXXXKPLK------HVQCYNC 1068
+ E MKK E S +GLV RG E+ + + C C
Sbjct: 215 AKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYC 274
Query: 1067 NEKGHYASNCPHPKKENKRDGQ--KKGKAKIEANYASGSEEDE-------FSLCVSTQDY 915
GH S C + ++KR G+ KGK + E A ++E ++ C T D
Sbjct: 275 KRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLVAYAGCAQTSD- 333
Query: 914 MTERWILDSGCSYHMCPNRKWFTSYESIDGGSVLMGNDVACKTVGIGTIRVKMHDGVVRT 735
+WILD+ +YHMCPNR WF +YE++ GG+VLMG+D C+ GIGT+++KM DG +RT
Sbjct: 334 ---QWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRT 390
Query: 734 LTDVRHVPELKKSLISLGTLDSKGHKFVGEGGVLNIVNGSLVVMKGQ-KYGTLYTLIGSM 558
L+DVRH+P LK+SLISL TLD KG+K+ G G+L + GSLVVMK K LY L G+
Sbjct: 391 LSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTT 450
Query: 557 VIDDVAVGACS-NDSECTKMWHMRLGHMSEKGLSELCKRGFLKNLKKPSMGFCEHCVYGK 381
++ +VA + S ++S+ T +WHMRLGHMSE GL+EL KR L + FCEHC++GK
Sbjct: 451 ILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGK 510
Query: 380 QCRVKFKSSKHTTTGILDYVHTDVWGPSRVASKGGNRYYVSFIDDHTRYVWVYMMKSKDE 201
RVKF +S HTT GILDYVH+D+WGP+ S GG RY ++ +DD++R VW Y +K K +
Sbjct: 511 HKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQ 570
Query: 200 VFETFKKWKARVENRTDRKVKTLRSDNGTEYTYGPFQEFCAQQGIARHWTVRGTPQQNGM 21
F+ FK+WK VE +T++KVK LR+DNG E+ F+ +C +GI H+TV TPQQNG+
Sbjct: 571 AFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGV 630
Query: 20 AERMN 6
AERMN
Sbjct: 631 AERMN 635
>gb|AAP54315.2| retrotransposon protein, putative, Ty1-copia subclass [Oryza sativa
Japonica Group]
Length = 1312
Score = 488 bits (1255), Expect = e-135
Identities = 257/605 (42%), Positives = 374/605 (61%), Gaps = 19/605 (3%)
Frame = -3
Query: 1763 MSNARFEVEKFNGKNNFGIWQVQVKDILIQQGLHKALKGIKSKAASMSNDDWEEFDLQAC 1584
M++ ++++ + F +WQV+++ +L QQ L AL G + SND+ ++ D +A
Sbjct: 36 MASLKYDLPLLDRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTQDWSNDEKKK-DRKAM 94
Query: 1583 SSIRLCLANEVMYSVMGENTAAGIWLKLESMYMTKSMTNKMYLKKRLYRYMMVDGSTMQE 1404
S I L L+N ++ V+ E TAAG+WLKLE + MTK +T+KM+LK++L+ + + D ++ +
Sbjct: 95 SYIHLHLSNNILQEVLKEETAAGLWLKLEQICMTKDLTSKMHLKQKLFLHKLQDDGSVMD 154
Query: 1403 HVSEFRRRLADYLNVGMKMDDEDQAACLIFSLPESYEHLMTTFM-NREVVDLDEVQSALL 1227
H+S F+ +AD ++ +K D+ED L+ SLP SY + T + + + + L EV AL
Sbjct: 155 HLSTFKEIVADLESIEVKYDEEDLGLILLCSLPSSYANFRDTILYSHDTLILKEVYDALH 214
Query: 1226 SYELMKK-TRVENSIDAGQGLVARGNSSEQXXXXXXXXXXXXXKPLK------HVQCYNC 1068
+ E MKK E S +GLV RG E+ + + C C
Sbjct: 215 AKEKMKKMVPSEGSNSQAEGLVVRGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYC 274
Query: 1067 NEKGHYASNCPHPKKENKRDGQ--KKGKAKIEANYASGSEEDE-------FSLCVSTQDY 915
GH S C + ++KR G+ KGK + E A ++E ++ C T D
Sbjct: 275 KRDGHDISECWKLQDKDKRTGKYIPKGKKEEEGKAAVVTDEKSDTELLVAYAGCAQTSD- 333
Query: 914 MTERWILDSGCSYHMCPNRKWFTSYESIDGGSVLMGNDVACKTVGIGTIRVKMHDGVVRT 735
+WILD+ +YHMCPNR WF +YE++ GG+VLMG+D C+ GIGT+++KM DG +RT
Sbjct: 334 ---QWILDTAWTYHMCPNRDWFATYEALQGGTVLMGDDTPCEVAGIGTVQIKMFDGYIRT 390
Query: 734 LTDVRHVPELKKSLISLGTLDSKGHKFVGEGGVLNIVNGSLVVMKGQ-KYGTLYTLIGSM 558
L+DVRH+P LK+SLISL TLD KG+K+ G G+L + GSLVVMK K LY L G+
Sbjct: 391 LSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTT 450
Query: 557 VIDDVAVGACS-NDSECTKMWHMRLGHMSEKGLSELCKRGFLKNLKKPSMGFCEHCVYGK 381
++ +VA + S ++S+ T +WHMRLGHMSE GL+EL KR L + FCEHC++GK
Sbjct: 451 ILGNVAAVSDSLSNSDATNLWHMRLGHMSEIGLAELSKRELLDGQSIGKLKFCEHCIFGK 510
Query: 380 QCRVKFKSSKHTTTGILDYVHTDVWGPSRVASKGGNRYYVSFIDDHTRYVWVYMMKSKDE 201
RVKF +S HTT GILDYVH+D+WGP+ S GG RY ++ +DD++R VW Y +K K +
Sbjct: 511 HKRVKFNTSTHTTEGILDYVHSDLWGPACKTSFGGARYMMTIVDDYSRKVWPYFLKHKYQ 570
Query: 200 VFETFKKWKARVENRTDRKVKTLRSDNGTEYTYGPFQEFCAQQGIARHWTVRGTPQQNGM 21
F+ FK+WK VE +T++KVK LR+DNG E+ F+ +C +GI H+TV TPQQNG+
Sbjct: 571 AFDVFKEWKTMVERQTEKKVKILRTDNGMEFCSKIFKSYCKSEGIVHHYTVPHTPQQNGV 630
Query: 20 AERMN 6
AERMN
Sbjct: 631 AERMN 635
>gb|AAX92941.1| retrotransposon protein, putative, Ty1-copia sub-class [Oryza sativa
Japonica Group] gi|77548751|gb|ABA91548.1|
retrotransposon protein, putative, Ty1-copia subclass
[Oryza sativa Japonica Group]
Length = 2340
Score = 486 bits (1251), Expect = e-135
Identities = 257/606 (42%), Positives = 371/606 (61%), Gaps = 19/606 (3%)
Frame = -3
Query: 1763 MSNARFEVEKFNGKNNFGIWQVQVKDILIQQGLHKALKGIKSKAASMSNDDWEEFDLQAC 1584
M++ ++++ F +WQV+++ +L QQ L AL G + SND+ ++ D +A
Sbjct: 208 MASLKYDLPLLYRDTRFSLWQVKMRAVLAQQDLDDALSGFDKRTHDWSNDE-KKRDRKAM 266
Query: 1583 SSIRLCLANEVMYSVMGENTAAGIWLKLESMYMTKSMTNKMYLKKRLYRYMMVDGSTMQE 1404
S I L L+N ++ V+ E AAG+WLKLE + MTK +T+KM+LK+ L+ + + D ++ +
Sbjct: 267 SYIHLHLSNNILQEVLKEEIAAGLWLKLEQICMTKDLTSKMHLKQTLFLHKLQDDGSVMD 326
Query: 1403 HVSEFRRRLADYLNVGMKMDDEDQAACLIFSLPESYEHLMTTFM-NREVVDLDEVQSALL 1227
H+S F+ +AD ++ +K D+ED L+ SLP SY + T + +R+ + L EV AL
Sbjct: 327 HLSAFKEIIADLESMEVKYDEEDLGLILLCSLPSSYANFRDTILYSRDTLTLKEVYDALH 386
Query: 1226 SYELMKK-TRVENSIDAGQGLVARGNSSEQXXXXXXXXXXXXXKPLK------HVQCYNC 1068
E MKK E S +GL+ G E+ + + C C
Sbjct: 387 VKEKMKKMVPSEGSNSQAEGLIVWGRQQEKNTKNQSRDKSSSSYRGRSKSRGRYKSCKYC 446
Query: 1067 NEKGHYASNCPHPKKENKRDGQ--KKGKAKIEANYASGSEEDE-------FSLCVSTQDY 915
GH C ++KR G+ KGK + E A ++E ++ C T D
Sbjct: 447 KRDGHDIFECWKLHDKDKRTGKYVPKGKKEEEGKAAVVTDEKSDAELLVAYAGCAQTSD- 505
Query: 914 MTERWILDSGCSYHMCPNRKWFTSYESIDGGSVLMGNDVACKTVGIGTIRVKMHDGVVRT 735
+WIL++ C YHMCPNR WF +YE++ G+VLMG+D C+ GIGT+++KM DG +RT
Sbjct: 506 ---QWILNTACIYHMCPNRDWFATYEAVQVGTVLMGDDTPCEVAGIGTVQIKMFDGCIRT 562
Query: 734 LTDVRHVPELKKSLISLGTLDSKGHKFVGEGGVLNIVNGSLVVMKGQ-KYGTLYTLIGSM 558
L+DVRH+P LK+SLISL TLD KG+K+ G G+L + GSLVVMK K LY L G+
Sbjct: 563 LSDVRHIPNLKRSLISLCTLDRKGYKYSGGDGILKVTKGSLVVMKADIKSANLYHLRGTT 622
Query: 557 VIDDVAVGACS-NDSECTKMWHMRLGHMSEKGLSELCKRGFLKNLKKPSMGFCEHCVYGK 381
++ +VA + S ++S+ T +WHMRLGHM+E GL+EL KRG L + FCEHC++GK
Sbjct: 623 ILGNVAAVSDSLSNSDATNLWHMRLGHMTEIGLAELSKRGLLDGQSIGKLKFCEHCIFGK 682
Query: 380 QCRVKFKSSKHTTTGILDYVHTDVWGPSRVASKGGNRYYVSFIDDHTRYVWVYMMKSKDE 201
RVKF +S HTT GILDYVH+D+WGP+R S GG RY ++ +DD++R VW Y +K K +
Sbjct: 683 HKRVKFNTSTHTTEGILDYVHSDLWGPARKTSFGGTRYMMTIVDDYSRKVWPYFLKHKYQ 742
Query: 200 VFETFKKWKARVENRTDRKVKTLRSDNGTEYTYGPFQEFCAQQGIARHWTVRGTPQQNGM 21
F+ FK+WK VE +T+RKVK LR+DNG E+ F+ +C +GI RH+TV TPQQNG+
Sbjct: 743 AFDVFKEWKTMVERQTERKVKILRTDNGMEFCSKIFKSYCKSEGIVRHYTVPHTPQQNGV 802
Query: 20 AERMNR 3
AERMNR
Sbjct: 803 AERMNR 808