BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00002165
         (680 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

prf||1510387A retrotransposon del1-46                                  73   6e-11
gb|ABA93560.1| retrotransposon protein, putative, Ty3-gypsy subc...    71   2e-10
gb|ABA97430.1| retrotransposon protein, putative, Ty3-gypsy subc...    70   4e-10
gb|AAR89852.1| putative polyprotein [Oryza sativa Japonica Group...    70   5e-10
gb|ABF97872.1| retrotransposon protein, putative, Ty3-gypsy subc...    69   7e-10

>prf||1510387A retrotransposon del1-46
          Length = 1443

 Score = 72.8 bits (177), Expect = 6e-11
 Identities = 51/166 (30%), Positives = 80/166 (48%), Gaps = 14/166 (8%)
 Frame = -2

Query: 460 MAGDDNDVTGTGSNTIS--ADLGAILTQLVQTI--------QRGQHANLGDPFARRNKDF 311
           M  +++  + TG N +   A L A+L  +   +        Q  Q A  G+   R  K+F
Sbjct: 1   MVRENDSRSSTGGNVVDPFAQLLAVLQNMTNILHQQAAISHQAEQSARQGESRPRLIKEF 60

Query: 310 ATLGGQKFKGEKGAIDAEKWVTMCESVFAKMQLTEVQKQELASHQLEGSALFWW----RS 143
             L    FKG+   ++A +W+     +   + +T+ QK  LAS QL+G A FWW    RS
Sbjct: 61  KGLNPPIFKGDPDPLEAHRWIRHVTKILDTLGVTDEQKVILASFQLQGEAEFWWDAKVRS 120

Query: 142 IKDNVDVGTMAWEDFQVRFEGRFVPNAVKEQLTEKFFHLTQEGKTV 5
            +D  D   + W++F   F  +F P+ V++ L E+F  L Q   TV
Sbjct: 121 RED--DTTQIKWDEFVEVFTEKFFPDTVRDDL-ERFMTLVQGSLTV 163


>gb|ABA93560.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1469

 Score = 71.2 bits (173), Expect = 2e-10
 Identities = 50/153 (32%), Positives = 66/153 (43%), Gaps = 2/153 (1%)
 Frame = -2

Query: 457 AGDDNDVTGTGSNTISADLGAILTQLVQTIQRGQHANLGDPFARRNKDFATLGGQKFKGE 278
           A   ND T T   T  A + A  TQL+Q I   Q    G  F     +F       F   
Sbjct: 7   ATTSNDETQTPDLTTLAGVMATQTQLLQAIANNQGNRGGSSFG----EFMRTKPPTFATA 62

Query: 277 KGAIDAEKWVTMCESVFAKMQLTEVQKQELASHQLEGSALFWWRSIKD--NVDVGTMAWE 104
           +  +DAE W+ + E     +++ E  K   A++QLEG A  WW   K+    D G   WE
Sbjct: 63  EEPMDAEDWLRIIEKKLTLVRVPEADKVIFAANQLEGPAGDWWDMYKEAREEDAGEPNWE 122

Query: 103 DFQVRFEGRFVPNAVKEQLTEKFFHLTQEGKTV 5
           +F + F   FVP AV      +F  L Q   TV
Sbjct: 123 EFTIAFRDNFVPAAVMRMKKNEFRRLRQGNTTV 155


>gb|ABA97430.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1226

 Score = 70.1 bits (170), Expect = 4e-10
 Identities = 49/153 (32%), Positives = 66/153 (43%), Gaps = 2/153 (1%)
 Frame = -2

Query: 457 AGDDNDVTGTGSNTISADLGAILTQLVQTIQRGQHANLGDPFARRNKDFATLGGQKFKGE 278
           A   ND T T   T  A + A  TQL+Q I   Q  + G  F     +F +     F   
Sbjct: 7   ASTSNDETQTPDLTTLAGVMATQTQLLQAIANNQGNHEGSSFG----EFMSTKPPTFTTT 62

Query: 277 KGAIDAEKWVTMCESVFAKMQLTEVQKQELASHQLEGSALFWWRSIKD--NVDVGTMAWE 104
              ++AE W+ + E     +++ E  K   A +QLEG A  WW + K+    D G   WE
Sbjct: 63  DEPMEAEDWLRIIEKKLTLIRVREADKVIFAVNQLEGPAGDWWDTYKEAREEDAGEPTWE 122

Query: 103 DFQVRFEGRFVPNAVKEQLTEKFFHLTQEGKTV 5
           +F   F   FVP AV      +F  L Q   TV
Sbjct: 123 EFTAAFRENFVPAAVMRMKKNEFRRLRQGNTTV 155


>gb|AAR89852.1| putative polyprotein [Oryza sativa Japonica Group]
           gi|108711716|gb|ABF99511.1| retrotransposon protein,
           putative, Ty3-gypsy subclass [Oryza sativa Japonica
           Group]
          Length = 1312

 Score = 69.7 bits (169), Expect = 5e-10
 Identities = 48/153 (31%), Positives = 66/153 (43%), Gaps = 2/153 (1%)
 Frame = -2

Query: 457 AGDDNDVTGTGSNTISADLGAILTQLVQTIQRGQHANLGDPFARRNKDFATLGGQKFKGE 278
           A   N+ T T   T  A + A  TQL+Q I   Q    G  F     +F       F   
Sbjct: 7   ASTSNEETQTPDLTTLAGVMATQTQLLQAIANNQGNRGGSSFG----EFMRTKPPTFTTA 62

Query: 277 KGAIDAEKWVTMCESVFAKMQLTEVQKQELASHQLEGSALFWWRSIKD--NVDVGTMAWE 104
           +  +DAE W+ + E     +++ E  K   A++QLEG A  WW + K+    D G   WE
Sbjct: 63  EEPMDAEDWLRIIEKKLTLVRVREADKVIFAANQLEGPAGDWWDTYKEAREEDAGEPNWE 122

Query: 103 DFQVRFEGRFVPNAVKEQLTEKFFHLTQEGKTV 5
           +F   F   FVP AV      +F  L Q   T+
Sbjct: 123 EFTTAFRDNFVPAAVMRMKKNEFRRLRQGNTTI 155


>gb|ABF97872.1| retrotransposon protein, putative, Ty3-gypsy subclass [Oryza sativa
           Japonica Group]
          Length = 1299

 Score = 69.3 bits (168), Expect = 7e-10
 Identities = 49/153 (32%), Positives = 65/153 (42%), Gaps = 2/153 (1%)
 Frame = -2

Query: 457 AGDDNDVTGTGSNTISADLGAILTQLVQTIQRGQHANLGDPFARRNKDFATLGGQKFKGE 278
           A   N+ T T   T  A + A  TQL+Q I   Q    G  F    ++F       F   
Sbjct: 7   ASTSNEETQTPDLTTLAGVMATQTQLLQAIANNQGNRGGSSF----EEFMRTKPPTFATA 62

Query: 277 KGAIDAEKWVTMCESVFAKMQLTEVQKQELASHQLEGSALFWWRSIKD--NVDVGTMAWE 104
              ++AE W+ + E     +++ E  K   A HQLEG A  WW + K+    D G   WE
Sbjct: 63  DEPMEAEDWLRIIEKKLTLVRVREADKVIFAVHQLEGPAGDWWDTYKEAWEEDAGEPTWE 122

Query: 103 DFQVRFEGRFVPNAVKEQLTEKFFHLTQEGKTV 5
           +F   F   FVP AV      +F  L Q   TV
Sbjct: 123 EFTTVFRENFVPAAVMRMKKNEFRRLRQGNATV 155