BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00002123
         (610 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264089.2| PREDICTED: eukaryotic translation initiation...   197   1e-48
ref|XP_002509464.1| eukaryotic translation initiation factor 3 s...   182   3e-44
ref|XP_004134552.1| PREDICTED: eukaryotic translation initiation...   179   3e-43
ref|XP_003545990.1| PREDICTED: eukaryotic translation initiation...   175   5e-42
ref|XP_002305792.1| predicted protein [Populus trichocarpa] gi|2...   173   2e-41

>ref|XP_002264089.2| PREDICTED: eukaryotic translation initiation factor 3 subunit
           D-like [Vitis vinifera]
          Length = 567

 Score =  197 bits (501), Expect = 1e-48
 Identities = 109/194 (56%), Positives = 121/194 (62%), Gaps = 3/194 (1%)
 Frame = -2

Query: 576 FEIGTVAFNPDGWGPPETPSTLLSNHPNNVPFAPFNRSDKLGRIADWTXXXXXXXXXXNK 397
           FE+G V FNPDGWGPPE+ S  L NHP NVPFAPF+RSDKLGRIADWT           +
Sbjct: 5   FEVGAVPFNPDGWGPPESASPHLPNHPINVPFAPFSRSDKLGRIADWTRTYNNPSRNPLR 64

Query: 396 TPISDSPFLLEDDVASGF---PDDDSTFRLVDXXXXXXXXXXXXXXFQQQRQLPQXXXXX 226
            P SDS F    D + G     D+DS+FRLVD              FQQQRQLPQ     
Sbjct: 65  NP-SDSVFDFTGDDSFGAGIAADEDSSFRLVDGKPPPRPKFGPKWRFQQQRQLPQRRDEE 123

Query: 225 XXXXXXXXXXXXXXXXRLYNQNRTGNNQPRREAAVFKSSVDIQPEWTMLDQIPFSTFTKM 46
                           RLYN NR+G N  RREAAVFKSSVDIQPEW MLDQIPFSTF+K+
Sbjct: 124 VEARKREAEKERARRDRLYNLNRSGGNNQRREAAVFKSSVDIQPEWNMLDQIPFSTFSKL 183

Query: 45  SFAVSEPEDLLVCG 4
           SF+V EPEDLL+CG
Sbjct: 184 SFSVPEPEDLLLCG 197


>ref|XP_002509464.1| eukaryotic translation initiation factor 3 subunit, putative
           [Ricinus communis] gi|223549363|gb|EEF50851.1|
           eukaryotic translation initiation factor 3 subunit,
           putative [Ricinus communis]
          Length = 574

 Score =  182 bits (463), Expect = 3e-44
 Identities = 109/204 (53%), Positives = 121/204 (59%), Gaps = 10/204 (4%)
 Frame = -2

Query: 582 MAFEIGTVAFNPDGWGPPE----TPSTLLSNHPNNVPFAPFNRSDKLGRIADWTXXXXXX 415
           + FE+G V FNPDGWGPP+    + +T  S  P NVPFAPF+RSDKLGRIADWT      
Sbjct: 2   VGFEVGFVPFNPDGWGPPDAAFASAATTTSTLPLNVPFAPFSRSDKLGRIADWTRNINPN 61

Query: 414 XXXXN-KTPISDSPFLLEDD----VASGFPDDDSTFRLVDXXXXXXXXXXXXXXFQQQRQ 250
               N K   SDS F    D     A+   DDDSTFRLVD              F Q RQ
Sbjct: 62  ANRPNSKQNASDSVFDFTADDSFPAATAAGDDDSTFRLVDGKPPPRPKFGPKWRFNQHRQ 121

Query: 249 -LPQXXXXXXXXXXXXXXXXXXXXXRLYNQNRTGNNQPRREAAVFKSSVDIQPEWTMLDQ 73
            LPQ                     RLYN NR+  NQPRREAAVFKSSVDIQPEW MLDQ
Sbjct: 122 QLPQRRDEEVEARKREAEKERARRDRLYNMNRSNQNQPRREAAVFKSSVDIQPEWNMLDQ 181

Query: 72  IPFSTFTKMSFAVSEPEDLLVCGG 1
           IPFSTF+K+SF+V EPEDLL+CGG
Sbjct: 182 IPFSTFSKLSFSVPEPEDLLLCGG 205


>ref|XP_004134552.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
           D-like [Cucumis sativus]
           gi|449506762|ref|XP_004162841.1| PREDICTED: eukaryotic
           translation initiation factor 3 subunit D-like [Cucumis
           sativus]
          Length = 566

 Score =  179 bits (455), Expect = 3e-43
 Identities = 106/196 (54%), Positives = 121/196 (61%), Gaps = 4/196 (2%)
 Frame = -2

Query: 576 FEIGTVAFNPDGWGPPETPSTLL--SNHPNNVPFAPFNRSDKLGRIADWTXXXXXXXXXX 403
           FE+G V +NPDGWGPP++ +TL+  SN P NVPFAPF+RSDKLGRIADWT          
Sbjct: 5   FEVGAVPYNPDGWGPPDSTATLVASSNLPLNVPFAPFSRSDKLGRIADWTRTMNNPGRP- 63

Query: 402 NKTPISDSPF-LLEDDVASGFPDDDSTFRLVDXXXXXXXXXXXXXXFQQQR-QLPQXXXX 229
            KT  SDS F    DD      D+D +FRLVD              F QQR QLPQ    
Sbjct: 64  -KTA-SDSVFDFTNDDSFPANADEDMSFRLVDGKPPPRPKFGPKWRFNQQRTQLPQRRDE 121

Query: 228 XXXXXXXXXXXXXXXXXRLYNQNRTGNNQPRREAAVFKSSVDIQPEWTMLDQIPFSTFTK 49
                            RLYN NR+  N PRREAAVFKSSV+IQPEW MLDQIPFSTF+K
Sbjct: 122 EVEARKREAEKERARRDRLYNLNRSNVNAPRREAAVFKSSVEIQPEWNMLDQIPFSTFSK 181

Query: 48  MSFAVSEPEDLLVCGG 1
           +SF+V EPEDLL+CGG
Sbjct: 182 LSFSVPEPEDLLLCGG 197


>ref|XP_003545990.1| PREDICTED: eukaryotic translation initiation factor 3 subunit
           D-like isoform 1 [Glycine max]
           gi|356555340|ref|XP_003545991.1| PREDICTED: eukaryotic
           translation initiation factor 3 subunit D-like isoform 2
           [Glycine max]
          Length = 565

 Score =  175 bits (444), Expect = 5e-42
 Identities = 100/194 (51%), Positives = 114/194 (58%), Gaps = 2/194 (1%)
 Frame = -2

Query: 579 AFEIGTVAFNPDGWGPPETPSTLLSNH--PNNVPFAPFNRSDKLGRIADWTXXXXXXXXX 406
           AF+IG V FN DGWGPP+  ++  +N+  P NVPFAPF+RSDKLGRIADWT         
Sbjct: 4   AFDIGAVPFNADGWGPPDNATSGSNNNNLPLNVPFAPFSRSDKLGRIADWTRNFNNPTRS 63

Query: 405 XNKTPISDSPFLLEDDVASGFPDDDSTFRLVDXXXXXXXXXXXXXXFQQQRQLPQXXXXX 226
             K P         DD      DDD++FRLVD              FQQQRQLPQ     
Sbjct: 64  --KNPADAVFDFANDDSFPASADDDASFRLVDGKPPPRPKFGPKWRFQQQRQLPQRRDEE 121

Query: 225 XXXXXXXXXXXXXXXXRLYNQNRTGNNQPRREAAVFKSSVDIQPEWTMLDQIPFSTFTKM 46
                           RLY+ NR+  NQ RREAAVFKSSVDIQPEW M DQIPFSTF+K+
Sbjct: 122 VEAKKREQEKERARRDRLYHMNRSNPNQQRREAAVFKSSVDIQPEWNMHDQIPFSTFSKL 181

Query: 45  SFAVSEPEDLLVCG 4
           SF V EPEDLL+CG
Sbjct: 182 SFTVPEPEDLLLCG 195


>ref|XP_002305792.1| predicted protein [Populus trichocarpa] gi|222848756|gb|EEE86303.1|
           predicted protein [Populus trichocarpa]
          Length = 556

 Score =  173 bits (438), Expect = 2e-41
 Identities = 102/199 (51%), Positives = 116/199 (58%), Gaps = 7/199 (3%)
 Frame = -2

Query: 576 FEIGTVAFNPDGWGPPETP--STLLSNHPNNVPFAPFNRSDKLGRIADWTXXXXXXXXXX 403
           FE+G V FNPDGWGPP+    +T  S  P NVPFAPF+RS+KLGRIAD+T          
Sbjct: 5   FEVGAVPFNPDGWGPPDATVTATTTSTLPLNVPFAPFSRSEKLGRIADFTRNLNQGQGGA 64

Query: 402 N--KTPISDSPF-LLEDDVASGFPDDDSTFRLVDXXXXXXXXXXXXXXFQQQR--QLPQX 238
              K   SDS F    DD      D+DS+FRLVD              F Q    QLPQ 
Sbjct: 65  GGRKNAASDSVFDFTADDSFPSAADNDSSFRLVDGKPPPRPKFGPKWRFNQHNRPQLPQR 124

Query: 237 XXXXXXXXXXXXXXXXXXXXRLYNQNRTGNNQPRREAAVFKSSVDIQPEWTMLDQIPFST 58
                               R YNQNR+  NQPRREAAVFKSSV+IQPEW MLDQIPFST
Sbjct: 125 RDEEVEAKKREAEKERARRDRHYNQNRSNQNQPRREAAVFKSSVEIQPEWNMLDQIPFST 184

Query: 57  FTKMSFAVSEPEDLLVCGG 1
           FTK+SF+V EPEDL++CGG
Sbjct: 185 FTKLSFSVPEPEDLILCGG 203