BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00002078
         (1601 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002512770.1| uv excision repair protein rad23, putative [...   470   e-130
ref|XP_002303970.1| predicted protein [Populus trichocarpa] gi|2...   465   e-128
ref|XP_003543713.1| PREDICTED: putative DNA repair protein RAD23...   463   e-128
gb|ABK95041.1| unknown [Populus trichocarpa]                          462   e-127
ref|XP_003543714.1| PREDICTED: putative DNA repair protein RAD23...   459   e-127

>ref|XP_002512770.1| uv excision repair protein rad23, putative [Ricinus communis]
            gi|223547781|gb|EEF49273.1| uv excision repair protein
            rad23, putative [Ricinus communis]
          Length = 359

 Score =  470 bits (1210), Expect = e-130
 Identities = 254/382 (66%), Positives = 279/382 (73%), Gaps = 6/382 (1%)
 Frame = -3

Query: 1482 VKTLKGSHFEIRVHPNDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLEENSV 1303
            VKTLKGSHFEIRV PNDT+MAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL +N V
Sbjct: 5    VKTLKGSHFEIRVQPNDTVMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLADNKV 64

Query: 1302 SEDGFLVVMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGSDS 1123
            +EDGFLVVML                                               S+S
Sbjct: 65   TEDGFLVVMLSKSKTSGSSGTSSTQPAAATPPTTAP--------------------SSNS 104

Query: 1122 ATGTSEAP---ADTYGQAASNLVAGNNLEPIIQQLMDMGGGSWDKETVTRALRAAYNNPE 952
                   P    DTYG+AASNLVAG+NLE  IQQ+MDMGGG+WDKETVTRALRAAYNNPE
Sbjct: 105  TPAVEVQPPTQTDTYGEAASNLVAGDNLEQTIQQIMDMGGGTWDKETVTRALRAAYNNPE 164

Query: 951  RAVDYLYSGIPEAAEVAVQVPSYPTSQQSVVPNLTAETGLSGAAPASGVPNSAPLNLFPQ 772
            RAVDYLYSGIPE AEVAV V   P  Q +       ETG + AAP SGVPNS+PLN+FPQ
Sbjct: 165  RAVDYLYSGIPETAEVAVPVAHLPAGQAT-------ETGAAPAAPLSGVPNSSPLNMFPQ 217

Query: 771  EAVNXXXXXXXXAL---DFLRNNHQFQTLRTMVQANPQILQPMLQELSKQNPYLLRLIQE 601
            EA++         L   DFLRNN QFQTLR+MVQANPQILQPMLQEL KQNP LLR+IQE
Sbjct: 218  EALSAAGGGSAGGLGSLDFLRNNAQFQTLRSMVQANPQILQPMLQELGKQNPQLLRMIQE 277

Query: 600  HHAEFLRLVNEPVDGAEEDMFEQPEQDMPHAISVTPAEQEAIGRLEAMGFDRDLVIEAFL 421
            HHAEFL+L+NEP++G+E D+F+Q EQDMPHAI+VTPAEQ AI RL AMGFDR LVIEAFL
Sbjct: 278  HHAEFLQLLNEPLEGSEGDIFDQGEQDMPHAINVTPAEQAAIERLVAMGFDRALVIEAFL 337

Query: 420  ACDRNEELAANYLLENGGDYED 355
            ACDRNE LAANYLLENGGD+ED
Sbjct: 338  ACDRNEVLAANYLLENGGDFED 359


>ref|XP_002303970.1| predicted protein [Populus trichocarpa] gi|222841402|gb|EEE78949.1|
            predicted protein [Populus trichocarpa]
          Length = 358

 Score =  465 bits (1196), Expect = e-128
 Identities = 247/380 (65%), Positives = 277/380 (72%), Gaps = 4/380 (1%)
 Frame = -3

Query: 1482 VKTLKGSHFEIRVHPNDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLEENSV 1303
            VKTLKGSHFEI+VHP DTIM VKKNIED QGKDNYPCGQQLLIHNGKVLKDETTL +N V
Sbjct: 5    VKTLKGSHFEIKVHPTDTIMGVKKNIEDAQGKDNYPCGQQLLIHNGKVLKDETTLADNKV 64

Query: 1302 SEDGFLVVMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGSDS 1123
            +EDGFLVVML                                               + +
Sbjct: 65   TEDGFLVVMLSKSKTGTAGTSSTQPVSTPPTTTPTSI-------------------STPA 105

Query: 1122 ATGTSEAPADTYGQAASNLVAGNNLEPIIQQLMDMGGGSWDKETVTRALRAAYNNPERAV 943
                + A +DTYGQAASNLVAG+NLE  +QQ+MDMGGG+WDKETVTRALRAAYNNPERAV
Sbjct: 106  PDAQAFAQSDTYGQAASNLVAGSNLEQTLQQIMDMGGGTWDKETVTRALRAAYNNPERAV 165

Query: 942  DYLYSGIPEAAEVAVQVPSYPTSQQSVVPNLTAETGLSGAAPAS--GVPNSAPLNLFPQ- 772
            DYLYSGIPE AEVAV V  +P  Q +       ETG + AAPA   G PNS+PLN+FP+ 
Sbjct: 166  DYLYSGIPETAEVAVPVARFPADQAT-------ETGAAPAAPAPAFGAPNSSPLNMFPET 218

Query: 771  -EAVNXXXXXXXXALDFLRNNHQFQTLRTMVQANPQILQPMLQELSKQNPYLLRLIQEHH 595
                         +LDFLRNN QFQ LR+MVQANPQILQPMLQEL KQNP LLR+IQEHH
Sbjct: 219  ISGGGGGAGGGLGSLDFLRNNQQFQALRSMVQANPQILQPMLQELGKQNPQLLRIIQEHH 278

Query: 594  AEFLRLVNEPVDGAEEDMFEQPEQDMPHAISVTPAEQEAIGRLEAMGFDRDLVIEAFLAC 415
            AEFL+L+NEP+DG+E D+F+QP+QDMPHAI+VTPAEQEAI RLEAMGFDR LVIEAFLAC
Sbjct: 279  AEFLQLINEPLDGSEGDIFDQPDQDMPHAINVTPAEQEAIERLEAMGFDRALVIEAFLAC 338

Query: 414  DRNEELAANYLLENGGDYED 355
            DRNE+LAANYLLEN GD+ED
Sbjct: 339  DRNEQLAANYLLENAGDFED 358


>ref|XP_003543713.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 1
            [Glycine max]
          Length = 367

 Score =  463 bits (1192), Expect = e-128
 Identities = 247/375 (65%), Positives = 274/375 (73%)
 Frame = -3

Query: 1482 VKTLKGSHFEIRVHPNDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLEENSV 1303
            VKTLKGSHFEIRV P+DTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL +N V
Sbjct: 5    VKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLSDNKV 64

Query: 1302 SEDGFLVVMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGSDS 1123
            SEDGFLVVML                                               S +
Sbjct: 65   SEDGFLVVMLSKGKTLGSAGISSTQFASNPPTTVSTPNSTPLVQPQSANNN-----ASAT 119

Query: 1122 ATGTSEAPADTYGQAASNLVAGNNLEPIIQQLMDMGGGSWDKETVTRALRAAYNNPERAV 943
               T+    +TYGQAASNLVAG+NLE  IQQLMDMGGGSWD++TVT ALRAAYNNPERAV
Sbjct: 120  DVTTTNVTTNTYGQAASNLVAGSNLEQTIQQLMDMGGGSWDRDTVTCALRAAYNNPERAV 179

Query: 942  DYLYSGIPEAAEVAVQVPSYPTSQQSVVPNLTAETGLSGAAPASGVPNSAPLNLFPQEAV 763
            DYLYSGIP AAE+AV   SYP SQ       T ETG +      GVPNS+PLN+FPQE +
Sbjct: 180  DYLYSGIPVAAEIAVPAASYPISQ-------TTETGGASVGAVPGVPNSSPLNMFPQETI 232

Query: 762  NXXXXXXXXALDFLRNNHQFQTLRTMVQANPQILQPMLQELSKQNPYLLRLIQEHHAEFL 583
            +         LDFLRNN QFQ LR+MVQ+NPQILQP+LQEL KQNP LL LIQEHHAEFL
Sbjct: 233  SGAGAEIGS-LDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPSLLTLIQEHHAEFL 291

Query: 582  RLVNEPVDGAEEDMFEQPEQDMPHAISVTPAEQEAIGRLEAMGFDRDLVIEAFLACDRNE 403
            +L+NEPV+G+E D+F+QPEQDMPHAI+VTPAEQEAIGRLEAMGFDR  VIEAFLACD +E
Sbjct: 292  QLINEPVEGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDHDE 351

Query: 402  ELAANYLLENGGDYE 358
            +LAANYLLEN GD+E
Sbjct: 352  QLAANYLLENAGDFE 366


>gb|ABK95041.1| unknown [Populus trichocarpa]
          Length = 375

 Score =  462 bits (1189), Expect = e-127
 Identities = 248/380 (65%), Positives = 279/380 (73%), Gaps = 4/380 (1%)
 Frame = -3

Query: 1482 VKTLKGSHFEIRVHPNDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLEENSV 1303
            VKTLKGSHFEI+V P DT+M VKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL +N V
Sbjct: 5    VKTLKGSHFEIKVQPTDTVMGVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLVDNKV 64

Query: 1302 SEDGFLVVMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGSDS 1123
            +EDGFLVVML                                             + SD+
Sbjct: 65   TEDGFLVVMLSKSKTAAAGTSSTQPVSTPPTTTPTSNSTPDAPAPDAQAPASKSASASDT 124

Query: 1122 ATGTSEAPADTYGQAASNLVAGNNLEPIIQQLMDMGGGSWDKETVTRALRAAYNNPERAV 943
            AT  + A +DTYGQAASNLVAG++LE  IQQ+MD+GGG+WDKETVTRALRAAYNNPERAV
Sbjct: 125  AT--ANAQSDTYGQAASNLVAGSSLEQTIQQIMDVGGGNWDKETVTRALRAAYNNPERAV 182

Query: 942  DYLYSGIPEAAEVAVQVPSYPTSQQSVVPNLTAETGLSGAAPA--SGVPNSAPLNLFPQ- 772
            DYLYSGIPE AEVAV V  +P  Q         ETG + AAPA   G PNS+PLN+FP+ 
Sbjct: 183  DYLYSGIPETAEVAVPVARFPADQG-------IETGAAPAAPALAPGGPNSSPLNMFPET 235

Query: 771  -EAVNXXXXXXXXALDFLRNNHQFQTLRTMVQANPQILQPMLQELSKQNPYLLRLIQEHH 595
                         +LDFLRNN QFQ LR+MVQANPQILQPMLQEL KQNP LLR+IQEH+
Sbjct: 236  LSGGGGDAGLVLGSLDFLRNNQQFQALRSMVQANPQILQPMLQELGKQNPQLLRMIQEHN 295

Query: 594  AEFLRLVNEPVDGAEEDMFEQPEQDMPHAISVTPAEQEAIGRLEAMGFDRDLVIEAFLAC 415
            AEFL+L+NEP+DG+E D+F+QP+QDMPHAI+VTPAEQEAI RL AMGFDR LVIEAFLAC
Sbjct: 296  AEFLQLINEPLDGSEGDIFDQPDQDMPHAINVTPAEQEAIERLVAMGFDRALVIEAFLAC 355

Query: 414  DRNEELAANYLLENGGDYED 355
            DRNEELAANYLLENG D+ED
Sbjct: 356  DRNEELAANYLLENGADFED 375


>ref|XP_003543714.1| PREDICTED: putative DNA repair protein RAD23-1-like isoform 2
            [Glycine max]
          Length = 353

 Score =  459 bits (1181), Expect = e-127
 Identities = 245/375 (65%), Positives = 272/375 (72%)
 Frame = -3

Query: 1482 VKTLKGSHFEIRVHPNDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLEENSV 1303
            VKTLKGSHFEIRV P+DTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTL +N V
Sbjct: 5    VKTLKGSHFEIRVQPSDTIMAVKKNIEDVQGKDNYPCGQQLLIHNGKVLKDETTLSDNKV 64

Query: 1302 SEDGFLVVMLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGSDS 1123
            SEDGFLVVML                                               + +
Sbjct: 65   SEDGFLVVMLSKGKTLGSAGISSTQACCFNPPTTVSTP-------------------NST 105

Query: 1122 ATGTSEAPADTYGQAASNLVAGNNLEPIIQQLMDMGGGSWDKETVTRALRAAYNNPERAV 943
                     +TYGQAASNLVAG+NLE  IQQLMDMGGGSWD++TVT ALRAAYNNPERAV
Sbjct: 106  PLVQPHVTTNTYGQAASNLVAGSNLEQTIQQLMDMGGGSWDRDTVTCALRAAYNNPERAV 165

Query: 942  DYLYSGIPEAAEVAVQVPSYPTSQQSVVPNLTAETGLSGAAPASGVPNSAPLNLFPQEAV 763
            DYLYSGIP AAE+AV   SYP SQ       T ETG +      GVPNS+PLN+FPQE +
Sbjct: 166  DYLYSGIPVAAEIAVPAASYPISQ-------TTETGGASVGAVPGVPNSSPLNMFPQETI 218

Query: 762  NXXXXXXXXALDFLRNNHQFQTLRTMVQANPQILQPMLQELSKQNPYLLRLIQEHHAEFL 583
            +         LDFLRNN QFQ LR+MVQ+NPQILQP+LQEL KQNP LL LIQEHHAEFL
Sbjct: 219  SGAGAEIGS-LDFLRNNPQFQALRSMVQSNPQILQPVLQELGKQNPSLLTLIQEHHAEFL 277

Query: 582  RLVNEPVDGAEEDMFEQPEQDMPHAISVTPAEQEAIGRLEAMGFDRDLVIEAFLACDRNE 403
            +L+NEPV+G+E D+F+QPEQDMPHAI+VTPAEQEAIGRLEAMGFDR  VIEAFLACD +E
Sbjct: 278  QLINEPVEGSEGDIFDQPEQDMPHAINVTPAEQEAIGRLEAMGFDRASVIEAFLACDHDE 337

Query: 402  ELAANYLLENGGDYE 358
            +LAANYLLEN GD+E
Sbjct: 338  QLAANYLLENAGDFE 352