BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00002062
         (216 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276130.2| PREDICTED: 26S protease regulatory subunit 6...   116   2e-24
ref|XP_004154554.1| PREDICTED: LOW QUALITY PROTEIN: 26S protease...   113   2e-23
ref|XP_004139931.1| PREDICTED: 26S protease regulatory subunit 6...   113   2e-23
ref|NP_200637.1| regulatory particle triple-A ATPase 3 [Arabidop...   112   4e-23
ref|XP_003538340.1| PREDICTED: 26S protease regulatory subunit 6...   111   5e-23

>ref|XP_002276130.2| PREDICTED: 26S protease regulatory subunit 6B homolog [Vitis
           vinifera]
          Length = 418

 Score =  116 bits (291), Expect = 2e-24
 Identities = 63/81 (77%), Positives = 69/81 (85%), Gaps = 9/81 (11%)
 Frame = +1

Query: 1   KPPASFKSD-------TDQSSN--DEEDLYGRLKSLQRQIEFVDIQEEYVKDEQKNLKRE 153
           +PP SF S        +DQSS+  DE+DLYGRLKSLQRQ+EF+DIQEEYVKDEQKNLKRE
Sbjct: 12  EPPPSFPSTRSDIQGFSDQSSSFSDEDDLYGRLKSLQRQLEFIDIQEEYVKDEQKNLKRE 71

Query: 154 LLRAQEEVKRIQSVPLVIGQF 216
           LLRAQEEVKRIQSVPLVIGQF
Sbjct: 72  LLRAQEEVKRIQSVPLVIGQF 92


>ref|XP_004154554.1| PREDICTED: LOW QUALITY PROTEIN: 26S protease regulatory subunit 6B
           homolog [Cucumis sativus]
          Length = 418

 Score =  113 bits (282), Expect = 2e-23
 Identities = 60/78 (76%), Positives = 67/78 (85%), Gaps = 6/78 (7%)
 Frame = +1

Query: 1   KPPASF---KSDTD---QSSNDEEDLYGRLKSLQRQIEFVDIQEEYVKDEQKNLKRELLR 162
           +PPAS    +SD     + S+DE+DLY RLKSLQRQ+EF+DIQEEYVKDEQKNLKRELLR
Sbjct: 15  EPPASLPPMRSDLQGLAEQSSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLR 74

Query: 163 AQEEVKRIQSVPLVIGQF 216
           AQEEVKRIQSVPLVIGQF
Sbjct: 75  AQEEVKRIQSVPLVIGQF 92


>ref|XP_004139931.1| PREDICTED: 26S protease regulatory subunit 6B homolog [Cucumis
           sativus]
          Length = 418

 Score =  113 bits (282), Expect = 2e-23
 Identities = 60/78 (76%), Positives = 67/78 (85%), Gaps = 6/78 (7%)
 Frame = +1

Query: 1   KPPASF---KSDTD---QSSNDEEDLYGRLKSLQRQIEFVDIQEEYVKDEQKNLKRELLR 162
           +PPAS    +SD     + S+DE+DLY RLKSLQRQ+EF+DIQEEYVKDEQKNLKRELLR
Sbjct: 15  EPPASLPPMRSDLQGLAEQSSDEDDLYSRLKSLQRQLEFIDIQEEYVKDEQKNLKRELLR 74

Query: 163 AQEEVKRIQSVPLVIGQF 216
           AQEEVKRIQSVPLVIGQF
Sbjct: 75  AQEEVKRIQSVPLVIGQF 92


>ref|NP_200637.1| regulatory particle triple-A ATPase 3 [Arabidopsis thaliana]
           gi|297793353|ref|XP_002864561.1| hypothetical protein
           ARALYDRAFT_495939 [Arabidopsis lyrata subsp. lyrata]
           gi|28558168|sp|Q9SEI4.1|PRS6B_ARATH RecName: Full=26S
           protease regulatory subunit 6B homolog; AltName:
           Full=26S protease subunit 6B homolog; AltName: Full=26S
           proteasome AAA-ATPase subunit RPT3; AltName:
           Full=Protein BMAA insensitive morphology 409; AltName:
           Full=Regulatory particle triple-A ATPase subunit 3
           gi|6652882|gb|AAF22523.1|AF123392_1 26S proteasome
           AAA-ATPase subunit RPT3 [Arabidopsis thaliana]
           gi|8777330|dbj|BAA96920.1| 26S proteasome AAA-ATPase
           subunit RPT3 [Arabidopsis thaliana]
           gi|17979231|gb|AAL49932.1| AT4g10340/F24G24_140
           [Arabidopsis thaliana] gi|56382019|gb|AAV85728.1|
           At5g58290 [Arabidopsis thaliana]
           gi|297310396|gb|EFH40820.1| hypothetical protein
           ARALYDRAFT_495939 [Arabidopsis lyrata subsp. lyrata]
           gi|332009646|gb|AED97029.1| regulatory particle triple-A
           ATPase 3 [Arabidopsis thaliana]
          Length = 408

 Score =  112 bits (279), Expect = 4e-23
 Identities = 56/62 (90%), Positives = 59/62 (95%)
 Frame = +1

Query: 31  DQSSNDEEDLYGRLKSLQRQIEFVDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIG 210
           D S+ DEEDLYGRLKSL+RQ+EF DIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIG
Sbjct: 21  DLSTADEEDLYGRLKSLERQLEFTDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPLVIG 80

Query: 211 QF 216
           QF
Sbjct: 81  QF 82


>ref|XP_003538340.1| PREDICTED: 26S protease regulatory subunit 6B homolog [Glycine max]
          Length = 423

 Score =  111 bits (278), Expect = 5e-23
 Identities = 54/65 (83%), Positives = 62/65 (95%)
 Frame = +1

Query: 22  SDTDQSSNDEEDLYGRLKSLQRQIEFVDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPL 201
           S +D +++DE+DLY RLK+LQRQ+EF+DIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPL
Sbjct: 33  SGSDATASDEDDLYSRLKTLQRQLEFIDIQEEYVKDEQKNLKRELLRAQEEVKRIQSVPL 92

Query: 202 VIGQF 216
           VIGQF
Sbjct: 93  VIGQF 97