BLASTX nr result
ID: Coptis23_contig00002029
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00002029
(445 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002269250.1| PREDICTED: KH domain-containing protein At4g... 83 3e-24
ref|XP_002264125.1| PREDICTED: KH domain-containing protein At4g... 77 3e-20
ref|XP_004137060.1| PREDICTED: KH domain-containing protein At4g... 68 7e-20
ref|XP_004165366.1| PREDICTED: KH domain-containing protein At4g... 68 7e-20
ref|XP_002310483.1| predicted protein [Populus trichocarpa] gi|2... 70 9e-20
>ref|XP_002269250.1| PREDICTED: KH domain-containing protein At4g18375-like [Vitis
vinifera]
Length = 648
Score = 82.8 bits (203), Expect(2) = 3e-24
Identities = 35/59 (59%), Positives = 51/59 (86%)
Frame = -1
Query: 427 PPGGNVSCRMLAVTSQIGGVMGKGGKNIEKVRKESGAKIRVMPSDQRPACASSGDEVIQ 251
PPGG VSCR+LA TSQ+G V+GKGGK +EK+R+ESG+KI+V+ +++ P CA+S DE+++
Sbjct: 146 PPGGVVSCRLLAETSQVGSVIGKGGKVVEKIRRESGSKIKVLTAEKLPTCAASTDEMVE 204
Score = 53.9 bits (128), Expect(2) = 3e-24
Identities = 25/43 (58%), Positives = 33/43 (76%)
Frame = -2
Query: 186 SGDEVIQILGDVFAVKKALIAISRRLQDNPPTEKAQAAGNRPV 58
S DE+++I GDV AVKKAL+A+SRRLQD P +K + G RP+
Sbjct: 198 STDEMVEIEGDVLAVKKALVAVSRRLQDCPNVDKTKLIGGRPL 240
Score = 62.0 bits (149), Expect(2) = 1e-10
Identities = 29/57 (50%), Positives = 41/57 (71%)
Frame = -1
Query: 421 GGNVSCRMLAVTSQIGGVMGKGGKNIEKVRKESGAKIRVMPSDQRPACASSGDEVIQ 251
G VS R++ ++Q+G +MGKGG I ++RK SGA IR++ SDQ P CAS D+V+Q
Sbjct: 387 GSPVSARLVVPSNQVGCLMGKGGTIISEMRKASGAGIRIIGSDQVPKCASENDQVVQ 443
Score = 28.5 bits (62), Expect(2) = 1e-10
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
Frame = -2
Query: 180 DEVIQILGDVFAVKKALIAISRRLQDNP-PTEKAQAAGNRPVGTLHGTFP 34
D+V+QI G+ V+ L I+ RL+DN P++ AG R ++ P
Sbjct: 439 DQVVQISGEFVNVQDGLYHITGRLRDNLFPSKTLNGAGIRSSSAMNEISP 488
>ref|XP_002264125.1| PREDICTED: KH domain-containing protein At4g18375 [Vitis vinifera]
gi|297735779|emb|CBI18466.3| unnamed protein product
[Vitis vinifera]
Length = 704
Score = 77.0 bits (188), Expect(2) = 3e-20
Identities = 36/58 (62%), Positives = 49/58 (84%), Gaps = 2/58 (3%)
Frame = -1
Query: 418 GNVS--CRMLAVTSQIGGVMGKGGKNIEKVRKESGAKIRVMPSDQRPACASSGDEVIQ 251
GNV+ CR+LA ++Q+G V+G+GGK +EK+R+ESGA+IRV+P D PACAS GDE+IQ
Sbjct: 179 GNVAVCCRLLAPSNQVGCVLGRGGKIVEKIRQESGAQIRVLPKDHIPACASPGDELIQ 236
Score = 46.2 bits (108), Expect(2) = 3e-20
Identities = 27/61 (44%), Positives = 34/61 (55%), Gaps = 2/61 (3%)
Frame = -2
Query: 183 GDEVIQILGDVFAVKKALIAISRRLQDNPPTEKAQAAGNRPV-GTLHGT-FPEAYAELPH 10
GDE+IQI G AV+KAL+ +S LQDNP + +A +P G LHG P P
Sbjct: 231 GDELIQITGTFPAVRKALLLVSSCLQDNPRADATNSAAAKPTGGMLHGNGMPGQLDSFPQ 290
Query: 9 R 7
R
Sbjct: 291 R 291
Score = 55.1 bits (131), Expect = 6e-06
Identities = 25/58 (43%), Positives = 37/58 (63%)
Frame = -1
Query: 424 PGGNVSCRMLAVTSQIGGVMGKGGKNIEKVRKESGAKIRVMPSDQRPACASSGDEVIQ 251
PG V R+L + QIG ++GKGG I ++R+ +GA IR+ +Q P C S DE++Q
Sbjct: 408 PGAAVVARLLVHSQQIGCLLGKGGIIISEMRRATGASIRIFAKEQVPKCGSQNDELVQ 465
>ref|XP_004137060.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 658
Score = 67.8 bits (164), Expect(2) = 7e-20
Identities = 32/56 (57%), Positives = 44/56 (78%)
Frame = -1
Query: 418 GNVSCRMLAVTSQIGGVMGKGGKNIEKVRKESGAKIRVMPSDQRPACASSGDEVIQ 251
G V CR+LA +Q+G V+GKGGK +EK+RKESG +IRV+ +D+ PACA DE+I+
Sbjct: 158 GVVYCRLLADVAQVGSVIGKGGKVVEKIRKESGCRIRVL-TDKLPACAGPSDEMIE 212
Score = 54.3 bits (129), Expect(2) = 7e-20
Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Frame = -2
Query: 180 DEVIQILGDVFAVKKALIAISRRLQDNPPTEKAQAAGNRPV-GTLHGTFPEAYAE 19
DE+I+I GDV+A+KKAL+A+SRRLQD PP+EK RP +H T P+ + +
Sbjct: 208 DEMIEIEGDVWAIKKALLAVSRRLQDCPPSEKRTV---RPAEAVIHETLPDLHMD 259
Score = 57.4 bits (137), Expect(2) = 2e-09
Identities = 25/57 (43%), Positives = 39/57 (68%)
Frame = -1
Query: 421 GGNVSCRMLAVTSQIGGVMGKGGKNIEKVRKESGAKIRVMPSDQRPACASSGDEVIQ 251
G V R++ ++Q+G V+GKGG I ++RK +G IR++ SDQ P CA+ DE++Q
Sbjct: 392 GSPVVARLVVPSNQVGCVLGKGGVIISEIRKVTGTNIRIISSDQVPNCAAESDEIVQ 448
Score = 29.3 bits (64), Expect(2) = 2e-09
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 27/75 (36%)
Frame = -2
Query: 180 DEVIQILGDVFAVKKALIAISRRLQDN--------------------PPT-------EKA 82
DE++QI G+ V+ AL ++ RL+DN P T + A
Sbjct: 444 DEIVQISGEFSNVQDALYNVTGRLRDNLFSSVLSNSGTRNGGGTSVYPETSPYGRVRDTA 503
Query: 81 QAAGNRPVGTLHGTF 37
+ PVGT HG+F
Sbjct: 504 PLVRSTPVGTSHGSF 518
>ref|XP_004165366.1| PREDICTED: KH domain-containing protein At4g18375-like [Cucumis
sativus]
Length = 643
Score = 67.8 bits (164), Expect(2) = 7e-20
Identities = 32/56 (57%), Positives = 44/56 (78%)
Frame = -1
Query: 418 GNVSCRMLAVTSQIGGVMGKGGKNIEKVRKESGAKIRVMPSDQRPACASSGDEVIQ 251
G V CR+LA +Q+G V+GKGGK +EK+RKESG +IRV+ +D+ PACA DE+I+
Sbjct: 163 GVVYCRLLADVAQVGSVIGKGGKVVEKIRKESGCRIRVL-TDKLPACAGPSDEMIE 217
Score = 54.3 bits (129), Expect(2) = 7e-20
Identities = 28/55 (50%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Frame = -2
Query: 180 DEVIQILGDVFAVKKALIAISRRLQDNPPTEKAQAAGNRPV-GTLHGTFPEAYAE 19
DE+I+I GDV+A+KKAL+A+SRRLQD PP+EK RP +H T P+ + +
Sbjct: 213 DEMIEIEGDVWAIKKALLAVSRRLQDCPPSEKRTV---RPAEAVIHETLPDLHMD 264
Score = 57.4 bits (137), Expect(2) = 4e-11
Identities = 25/57 (43%), Positives = 39/57 (68%)
Frame = -1
Query: 421 GGNVSCRMLAVTSQIGGVMGKGGKNIEKVRKESGAKIRVMPSDQRPACASSGDEVIQ 251
G V R++ ++Q+G V+GKGG I ++RK +G IR++ SDQ P CA+ DE++Q
Sbjct: 397 GSPVVARLVVPSNQVGCVLGKGGVIISEIRKVTGTNIRIISSDQVPNCAAESDEIVQ 453
Score = 35.0 bits (79), Expect(2) = 4e-11
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 7/55 (12%)
Frame = -2
Query: 180 DEVIQILGDVFAVKKALIAISRRLQDN-------PPTEKAQAAGNRPVGTLHGTF 37
DE++QI G+ V+ AL ++ RL+DN + A + PVGT HG+F
Sbjct: 449 DEIVQISGEFSNVQDALYNVTGRLRDNLFLVPYGRVRDTAPLVRSTPVGTSHGSF 503
>ref|XP_002310483.1| predicted protein [Populus trichocarpa] gi|222853386|gb|EEE90933.1|
predicted protein [Populus trichocarpa]
Length = 747
Score = 70.1 bits (170), Expect(2) = 9e-20
Identities = 32/57 (56%), Positives = 45/57 (78%)
Frame = -1
Query: 421 GGNVSCRMLAVTSQIGGVMGKGGKNIEKVRKESGAKIRVMPSDQRPACASSGDEVIQ 251
GG VSCR+LA S +G V+GKGGK +EK+RK+ G K++V+ D+ PACASS +E+I+
Sbjct: 153 GGLVSCRLLAEISSVGAVIGKGGKTVEKIRKDCGCKVKVL-IDKLPACASSNEEMIE 208
Score = 51.6 bits (122), Expect(2) = 9e-20
Identities = 29/64 (45%), Positives = 41/64 (64%), Gaps = 2/64 (3%)
Frame = -2
Query: 186 SGDEVIQILGDVFAVKKALIAISRRLQDNPPTEKAQAAGNRPVGTL-HGTFPEAYAE-LP 13
S +E+I+I GDV AVKK L+A+S RLQD P +K + ++PV + +FPE E LP
Sbjct: 202 SNEEMIEIEGDVSAVKKGLVAVSHRLQDCQPVDKTRVISSKPVEAVSRVSFPEVGVEILP 261
Query: 12 HRSS 1
S+
Sbjct: 262 QHSA 265
Score = 44.7 bits (104), Expect(2) = 8e-06
Identities = 21/58 (36%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Frame = -1
Query: 421 GGNVSCRMLAVTSQIGGVMGKGGKNIEKVRKESGAKIRVMPSDQ-RPACASSGDEVIQ 251
G VS R++ +Q+G ++GKGG I ++RK + IR++ DQ P C D V++
Sbjct: 402 GSPVSVRLVVSPNQVGCLLGKGGTIISEMRKATSTSIRIIGRDQGNPKCVPENDHVVE 459
Score = 29.6 bits (65), Expect(2) = 8e-06
Identities = 13/27 (48%), Positives = 19/27 (70%)
Frame = -2
Query: 180 DEVIQILGDVFAVKKALIAISRRLQDN 100
D V++ILGD VK ++ I+ RL+DN
Sbjct: 455 DHVVEILGDFLNVKDSIYHITGRLRDN 481