BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00001996
         (1091 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002285857.1| PREDICTED: photosystem II 22 kDa protein, ch...   318   2e-84
ref|XP_002513761.1| Photosystem II 22 kDa protein, chloroplast p...   312   8e-83
ref|XP_002300987.1| hypothetical protein POPTRDRAFT_816277 [Popu...   311   1e-82
gb|ACD56611.1| putative photosystem II protein [Gossypioides kir...   310   4e-82
gb|AFK43146.1| unknown [Lotus japonicus]                              308   2e-81

>ref|XP_002285857.1| PREDICTED: photosystem II 22 kDa protein, chloroplastic [Vitis
           vinifera] gi|302141814|emb|CBI19017.3| unnamed protein
           product [Vitis vinifera]
          Length = 270

 Score =  318 bits (814), Expect = 2e-84
 Identities = 177/271 (65%), Positives = 197/271 (72%), Gaps = 3/271 (1%)
 Frame = -1

Query: 962 MAQTMMLMSSVAGHG-LDLKRAPLIHRLKPKPFSHFFLTPXXXXXXXXXXXXXXTIALFX 786
           MAQTM++  SV+GH  LDLKR PL+ RL+PKPFSH  L P               +ALF 
Sbjct: 1   MAQTMLITPSVSGHSVLDLKRQPLLQRLRPKPFSHLLLPPLPTSSSTSSPAFTT-LALFK 59

Query: 785 XXXXXXXXXXXXXXXKLKVEDXXXXXXXXXXXTKQNELFVGRVAMIGFAASLLGEGITGK 606
                            +VED           TK+NELFVGRVAM+GFAASLLGE ITGK
Sbjct: 60  SKTKAAPSKKVTKPKP-QVEDGIFGTSGGIGFTKKNELFVGRVAMLGFAASLLGEAITGK 118

Query: 605 GILAQLNIETGIPIYEAEPXXXXXXXXXXLGAIGALGDRGRFVDD--ATGLEKAVIPAGK 432
           GILAQLN+ETGIPIYEAEP          LGAIGALGDRGRFVDD   TG+E AVIP GK
Sbjct: 119 GILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDDDPPTGIEGAVIPPGK 178

Query: 431 SFRSALGLREGGPIFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPIN 252
             RSALGLREGGP+FGFTK+NELFVGRLAQLG  FS+IGEIITGKGALAQLNIETGVPI+
Sbjct: 179 GLRSALGLREGGPLFGFTKSNELFVGRLAQLGIVFSIIGEIITGKGALAQLNIETGVPIS 238

Query: 251 ELEPLVLFNVLFFFIAALNPGNGKFVTDEEE 159
           ++EPLVLFNV+FFF AALNPG+GKFVTD+EE
Sbjct: 239 DIEPLVLFNVIFFFFAALNPGSGKFVTDDEE 269


>ref|XP_002513761.1| Photosystem II 22 kDa protein, chloroplast precursor, putative
           [Ricinus communis] gi|223546847|gb|EEF48344.1|
           Photosystem II 22 kDa protein, chloroplast precursor,
           putative [Ricinus communis]
          Length = 275

 Score =  312 bits (800), Expect = 8e-83
 Identities = 175/274 (63%), Positives = 195/274 (71%), Gaps = 6/274 (2%)
 Frame = -1

Query: 962 MAQTMMLMSSVAG-HGLDLKRAPLIH----RLKPKPFSHFFLTPXXXXXXXXXXXXXXTI 798
           MAQTM+ MS V+  H +DLKR PL+     RL+PKPFS    +P              T 
Sbjct: 1   MAQTMLFMSGVSTRHVVDLKRDPLLQFQVDRLRPKPFSSLLFSPLPTNSSSFAPSKTFTT 60

Query: 797 ALFXXXXXXXXXXXXXXXXKLKVEDXXXXXXXXXXXTKQNELFVGRVAMIGFAASLLGEG 618
                              K KVED           TKQNELFVGRVAM+GFAASLLGEG
Sbjct: 61  FALFKSKAKAAPKKTVVKPKQKVEDGVFGTSGGIGFTKQNELFVGRVAMLGFAASLLGEG 120

Query: 617 ITGKGILAQLNIETGIPIYEAEPXXXXXXXXXXLGAIGALGDRGRFVDDA-TGLEKAVIP 441
           +TGKGILAQLN+ETGIPIYEAEP          LGAIGALGDRG+FVDD  TG+E AVIP
Sbjct: 121 LTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDPPTGIEGAVIP 180

Query: 440 AGKSFRSALGLREGGPIFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 261
            GK FR+ALGL+EGGP+FGFTK+NELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG+
Sbjct: 181 PGKGFRAALGLKEGGPLFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGI 240

Query: 260 PINELEPLVLFNVLFFFIAALNPGNGKFVTDEEE 159
           P+NE+EPLVLFNV+FFF AALNPG GKFVTDEE+
Sbjct: 241 PVNEIEPLVLFNVIFFFFAALNPGTGKFVTDEED 274


>ref|XP_002300987.1| hypothetical protein POPTRDRAFT_816277 [Populus trichocarpa]
           gi|118488707|gb|ABK96164.1| unknown [Populus
           trichocarpa] gi|222842713|gb|EEE80260.1| hypothetical
           protein POPTRDRAFT_816277 [Populus trichocarpa]
          Length = 272

 Score =  311 bits (798), Expect = 1e-82
 Identities = 179/274 (65%), Positives = 196/274 (71%), Gaps = 6/274 (2%)
 Frame = -1

Query: 962 MAQTMMLMSSVAGHGL-DLKRAPL----IHRLKPKPFSHFFLTPXXXXXXXXXXXXXXTI 798
           MAQTM+LMS V+   + DLKR PL    + RL+P PFS     P               +
Sbjct: 1   MAQTMVLMSGVSTRQVVDLKRDPLLQFQVQRLRPAPFSRLLYNPLPSKASSSNAFTT--L 58

Query: 797 ALFXXXXXXXXXXXXXXXXKLKVEDXXXXXXXXXXXTKQNELFVGRVAMIGFAASLLGEG 618
           ALF                  KVED           TKQNELFVGRVAMIGFAASLLGE 
Sbjct: 59  ALFKPRTKAVPKKAAPPPKP-KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEA 117

Query: 617 ITGKGILAQLNIETGIPIYEAEPXXXXXXXXXXLGAIGALGDRGRFVDD-ATGLEKAVIP 441
           ITGKGIL+QLN+ETGIPIYEAEP          LGAIGALGDRGRFVDD  TG+E AVIP
Sbjct: 118 ITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDDPTTGIEGAVIP 177

Query: 440 AGKSFRSALGLREGGPIFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGV 261
            GKSFR+ALGL+EGGP+FGFTK+NELFVGRLAQLG AFSLIGEIITGKGALAQLNIETG+
Sbjct: 178 PGKSFRAALGLKEGGPLFGFTKSNELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGI 237

Query: 260 PINELEPLVLFNVLFFFIAALNPGNGKFVTDEEE 159
           P+NE+EPLVLFNVLFFFIAALNPG GKFVTDE+E
Sbjct: 238 PVNEIEPLVLFNVLFFFIAALNPGTGKFVTDEDE 271


>gb|ACD56611.1| putative photosystem II protein [Gossypioides kirkii]
          Length = 277

 Score =  310 bits (794), Expect = 4e-82
 Identities = 180/277 (64%), Positives = 195/277 (70%), Gaps = 9/277 (3%)
 Frame = -1

Query: 962 MAQTMMLMSSV---AGHGLDLKRA-PLIH----RLKPKPFSHFFLTPXXXXXXXXXXXXX 807
           MAQTM++MSS    A H ++LKR  PL+H     LKPKPFSHF   P             
Sbjct: 1   MAQTMLVMSSTSVSASHVVNLKRDHPLLHFQAQGLKPKPFSHFLFNPLSNAVAASSSKAF 60

Query: 806 XTIALFXXXXXXXXXXXXXXXXKLKVEDXXXXXXXXXXXTKQNELFVGRVAMIGFAASLL 627
            T ALF                  KVED           TKQNELFVGRVAMIGFAASLL
Sbjct: 61  TTFALFKSKTKAAPKKAEPKPKP-KVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLL 119

Query: 626 GEGITGKGILAQLNIETGIPIYEAEPXXXXXXXXXXLGAIGALGDRGRFVDDA-TGLEKA 450
           GE ITGKGILAQLN+ETGIPIYEAEP          LGAIGALGDRGRFVD+  TG+E A
Sbjct: 120 GEAITGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEPPTGVEGA 179

Query: 449 VIPAGKSFRSALGLREGGPIFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIE 270
           VIP GK  R ALGL+EGGP+FGFTKANELFVGRLAQLG AFSLIGEIITGKGALAQLNIE
Sbjct: 180 VIPPGKGVRGALGLKEGGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIE 239

Query: 269 TGVPINELEPLVLFNVLFFFIAALNPGNGKFVTDEEE 159
           TG+PI+++EPLVLFNV FFF AA+NPG GKFVTDEEE
Sbjct: 240 TGIPISDIEPLVLFNVAFFFAAAINPGTGKFVTDEEE 276


>gb|AFK43146.1| unknown [Lotus japonicus]
          Length = 273

 Score =  308 bits (789), Expect = 2e-81
 Identities = 178/275 (64%), Positives = 196/275 (71%), Gaps = 7/275 (2%)
 Frame = -1

Query: 962 MAQTMMLMSSVAG-HGLDLKRAPLIH----RLKPKPFSHFFLTPXXXXXXXXXXXXXXTI 798
           MAQTM+LMSSV+  + +DLK+ PL+H    RL+PK FS     P              T+
Sbjct: 1   MAQTMLLMSSVSSSYSVDLKKDPLLHLQSQRLRPK-FSQLSFNPLPSNSSLFSSRTFTTL 59

Query: 797 ALFXXXXXXXXXXXXXXXXKLKVEDXXXXXXXXXXXTKQNELFVGRVAMIGFAASLLGEG 618
           ALF                  KVED           TKQNELFVGRVAMIGFAASLLGE 
Sbjct: 60  ALFKSKAKAPPPKVVKQKP--KVEDGVFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEA 117

Query: 617 ITGKGILAQLNIETGIPIYEAEPXXXXXXXXXXLGAIGALGDRGRFVDDA--TGLEKAVI 444
           +TGKGILAQLN+ETGIPIYEAEP          LGAIGALGDRG+FVDD   TGL+KAVI
Sbjct: 118 LTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDESPTGLDKAVI 177

Query: 443 PAGKSFRSALGLREGGPIFGFTKANELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 264
           P GK  R ALGL EGGP+FGFTK+NELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG
Sbjct: 178 PPGKGLRGALGLSEGGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETG 237

Query: 263 VPINELEPLVLFNVLFFFIAALNPGNGKFVTDEEE 159
           +PINE+EPLVLFNV FFFIAALNPG GKFV+D+ E
Sbjct: 238 IPINEIEPLVLFNVAFFFIAALNPGTGKFVSDDGE 272