BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00001951
         (935 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276497.1| PREDICTED: THO complex subunit 4 [Vitis vini...   224   3e-56
ref|XP_002531919.1| RNA and export factor binding protein, putat...   220   4e-55
ref|XP_003553032.1| PREDICTED: THO complex subunit 4-like [Glyci...   197   2e-48
gb|ADE77937.1| unknown [Picea sitchensis]                             193   4e-47
ref|XP_004145851.1| PREDICTED: THO complex subunit 4-like [Cucum...   191   2e-46

>ref|XP_002276497.1| PREDICTED: THO complex subunit 4 [Vitis vinifera]
           gi|296087136|emb|CBI33510.3| unnamed protein product
           [Vitis vinifera]
          Length = 269

 Score =  224 bits (570), Expect = 3e-56
 Identities = 130/269 (48%), Positives = 154/269 (57%), Gaps = 4/269 (1%)
 Frame = +3

Query: 120 MANPLDMPLDDIIK---SDKXXXXXXXXXXXXXXXXXXXASNFRSAGPK-GNLRVNARPS 287
           MA  LDM LDDIIK   S++                           P+ G LRVNARPS
Sbjct: 1   MATSLDMSLDDIIKRSNSERVRGRGRARRGRGPIGGSFNGGRMSGIPPRRGPLRVNARPS 60

Query: 288 AHTIAKTFSRNKTVPWQRGLLEDSLIAAGYSGTETGAKLYVSNLHSGVTNEDIKELFSLI 467
           ++ IAK+  R K +PWQ  L EDSL AAG  G E G KLY+SNL  GVTNEDI+ELFS I
Sbjct: 61  SYAIAKSSRRTK-IPWQHDLFEDSLRAAGLPGLEAGTKLYISNLDYGVTNEDIRELFSEI 119

Query: 468 GELKRYTVHYDRNGRSSGSAEVIFTRRADALAAMKRYNNVQLDGKPMNIEIIGTSIATPX 647
           G++KRY VHY++NGR SGSAEV++TRR+DA AA+KRYNNV LDGKPM IEIIG+    P 
Sbjct: 120 GDIKRYAVHYEKNGRPSGSAEVVYTRRSDAFAAVKRYNNVLLDGKPMKIEIIGSDSDMPV 179

Query: 648 XXXXXXXXXXXXXXMRTVFMPPGSGRARTSAPVNXXXXXXXXXXXXXXXXXXXXXXXXXX 827
                          RTV M PG G AR S  +N                          
Sbjct: 180 SARVNVIGGVNGKRRRTVVMTPGVGHARGSTAINRSSSRRGRGGLSNGRGRGRAGSRGRG 239

Query: 828 XXXXKKEPIEKSADELNKELDNYHAEAMN 914
               +K+P+EKSA EL+KELDNYHAEAM+
Sbjct: 240 RGRGRKQPVEKSAVELDKELDNYHAEAMH 268


>ref|XP_002531919.1| RNA and export factor binding protein, putative [Ricinus communis]
           gi|223528429|gb|EEF30463.1| RNA and export factor
           binding protein, putative [Ricinus communis]
          Length = 268

 Score =  220 bits (560), Expect = 4e-55
 Identities = 129/267 (48%), Positives = 155/267 (58%), Gaps = 3/267 (1%)
 Frame = +3

Query: 120 MANPLDMPLDDIIKSDKXXXXXXXXXXXXXXXXXXXASNFR--SAGPKGNLRVNARPSAH 293
           M+  +DM LDDIIK ++                    S  R   AG KG L VNARPS  
Sbjct: 1   MSTSVDMSLDDIIKKNRERGRGGRGRARRGRGRGGSFSGGRMTGAGRKGPLSVNARPSQF 60

Query: 294 TIAKTFSRNKTVPWQRGLLEDSLIAAGYSGTETGAKLYVSNLHSGVTNEDIKELFSLIGE 473
           +IAK   R + +PWQ  LLEDS+ AAG +G E G KLYVSNL  GV+NEDI+ELF+ IG+
Sbjct: 61  SIAKPNRRIRNLPWQHDLLEDSIRAAGITGVEVGTKLYVSNLEYGVSNEDIRELFAEIGD 120

Query: 474 LKRYTVHYDRNGRSSGSAEVIFTRRADALAAMKRYNNVQLDGKPMNIEIIGTSIATPXXX 653
           LKRY VHYD+NGRS+GSAEV++TRR++A AA+K+YNNV LDGKPM IEI+G +   P   
Sbjct: 121 LKRYAVHYDKNGRSTGSAEVVYTRRSEAFAALKKYNNVLLDGKPMKIEIVGVTGEAP-IS 179

Query: 654 XXXXXXXXXXXXMRTVFMPPGSGRARTSAPVN-XXXXXXXXXXXXXXXXXXXXXXXXXXX 830
                        RTV M PG GR R  AP N                            
Sbjct: 180 ARVNVTGINGRRKRTVVMTPGPGRGRGFAPSNRGAGQRSRGGLRNLGRGRGRGRGRGGHG 239

Query: 831 XXXKKEPIEKSADELNKELDNYHAEAM 911
              KK+P+EKSADEL+KELD YHAEAM
Sbjct: 240 GRGKKQPLEKSADELDKELDTYHAEAM 266


>ref|XP_003553032.1| PREDICTED: THO complex subunit 4-like [Glycine max]
          Length = 298

 Score =  197 bits (502), Expect = 2e-48
 Identities = 113/236 (47%), Positives = 136/236 (57%), Gaps = 14/236 (5%)
 Frame = +3

Query: 255 KGNLRVNARPSAHTIAKTFSRNKTVPWQRGLLEDSLIAAGYSGTETGAKLYVSNLHSGVT 434
           +G L VN RPS++ IAK+  R +  PWQ  L EDSL AAG  G E G KLYVSNL  GVT
Sbjct: 68  RGPLMVNTRPSSYAIAKSIRRARPFPWQHDLFEDSLRAAGIQGVEVGTKLYVSNLDHGVT 127

Query: 435 NEDIKELFSLIGELKRYTVHYDRNGRSSGSAEVIFTRRADALAAMKRYNNVQLDGKPMNI 614
           NEDI+ELFS +GELKR+ VHYD+NG  SGSAEV++TRR+DA AA+KRYNNV LDGKPM I
Sbjct: 128 NEDIRELFSELGELKRFAVHYDKNGHPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKI 187

Query: 615 EIIGTSIATPXXXXXXXXXXXXXXXMRTVFMPP--------------GSGRARTSAPVNX 752
           EI+G++   P                RTV M P              G+GR R   P   
Sbjct: 188 EIVGSNSELP-ISARVNVTGVNGRRKRTVVMTPRGGQAGGGPTMPNRGAGRGRRGGP--- 243

Query: 753 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXKKEPIEKSADELNKELDNYHAEAMNIS 920
                                        +K+ +EKSA+EL+KEL+ YHAEAMNIS
Sbjct: 244 -RSGSGRGGGGGRGRGRGSRGGGGGRGRGRKDAVEKSAEELDKELETYHAEAMNIS 298


>gb|ADE77937.1| unknown [Picea sitchensis]
          Length = 274

 Score =  193 bits (491), Expect = 4e-47
 Identities = 117/276 (42%), Positives = 151/276 (54%), Gaps = 9/276 (3%)
 Frame = +3

Query: 120 MANPLDMPLDDIIKSDKXXXXXXXXXXXXXXXXXXXASNFRSAGPKGN------LRVN-- 275
           MAN LDM L+D+IK++K                       R     G       LRVN  
Sbjct: 1   MANSLDMSLEDLIKNNKQFSGGRGRGGSRGRGRGGGRGGSRGGDGVGRGRRGQQLRVNSN 60

Query: 276 ARPSAHTIAKTFSRNKTVPWQRGLLEDSLIAAGYS-GTETGAKLYVSNLHSGVTNEDIKE 452
           ARPS ++IAK+F+R K V WQ  + EDS+ A G   G ETG KLYVSNL SGV+N+DIKE
Sbjct: 61  ARPSPYSIAKSFNRAKGVVWQHDMFEDSMAAIGMPIGLETGTKLYVSNLDSGVSNQDIKE 120

Query: 453 LFSLIGELKRYTVHYDRNGRSSGSAEVIFTRRADALAAMKRYNNVQLDGKPMNIEIIGTS 632
           LF+ +G+LK   +HYDR+GRS+G+AEV+F ++ DA+AA+KRYNNVQLDGKPM IE++GT 
Sbjct: 121 LFTEVGDLKSCALHYDRSGRSNGTAEVVFVKKVDAVAAVKRYNNVQLDGKPMKIELVGTG 180

Query: 633 IATPXXXXXXXXXXXXXXXMRTVFMPPGSGRARTSAPVNXXXXXXXXXXXXXXXXXXXXX 812
           ++ P                RTV M PG  RA   A +                      
Sbjct: 181 LSLPLSARVNVTGTSAGRGRRTVVMTPGFTRAAADASMEQRGGNGNWNRRRGRRSNGRGR 240

Query: 813 XXXXXXXXXKKEPIEKSADELNKELDNYHAEAMNIS 920
                    + +  +KSA EL+KEL+NYH EAM  S
Sbjct: 241 GGRRGRG--RSQVPDKSAAELDKELENYHTEAMQTS 274


>ref|XP_004145851.1| PREDICTED: THO complex subunit 4-like [Cucumis sativus]
          Length = 286

 Score =  191 bits (486), Expect = 2e-46
 Identities = 119/285 (41%), Positives = 149/285 (52%), Gaps = 21/285 (7%)
 Frame = +3

Query: 120 MANPLDMPLDDIIKSDKXXXXXXXXXXXXXXXXXXXASNFRS----AGPKGNLRVNARPS 287
           M  PLDM L+D+IK +                     +  R     +  +G L +NAR S
Sbjct: 1   MTTPLDMSLEDVIKKNNREKLRARGRARRGRGAGGSFNGGRGVVIGSVRRGPLGINARAS 60

Query: 288 AHTIAKTFSRNKTVPWQRGLLEDSLIAAGYSGTETGAKLYVSNLHSGVTNEDIKELFSLI 467
           A++I K   R K V WQ  L EDSL A+G SG + G KLYVSNL  GVT EDIKELFS I
Sbjct: 61  AYSIRKPPHRMKNVQWQHDLFEDSLRASGISGIQIGTKLYVSNLDYGVTKEDIKELFSEI 120

Query: 468 GELKRYTVHYDRNGRSSGSAEVIFTRRADALAAMKRYNNVQLDGKPMNIEIIGTSIATPX 647
           G++KR+ +HYD+NGR SGSAEV++TRR+DA AA+KRYNNV LDGKPM IE++G +   P 
Sbjct: 121 GDVKRFAIHYDKNGRPSGSAEVVYTRRSDAFAALKRYNNVLLDGKPMKIEMLGDNAEMP- 179

Query: 648 XXXXXXXXXXXXXXMRTVFMPPGSGRARTSAPVN-----------------XXXXXXXXX 776
                          RTV +   SGR  TS  VN                          
Sbjct: 180 VSARINVTGTNGRNRRTVVLTSESGRNATSNVVNSFPGPSHRGGLRNARGRGRGAWSRGV 239

Query: 777 XXXXXXXXXXXXXXXXXXXXXKKEPIEKSADELNKELDNYHAEAM 911
                                +K+P+EKS+DEL+KEL+NYHAEAM
Sbjct: 240 GLGGGSGGGRGRGRGRGRGQGRKKPVEKSSDELDKELENYHAEAM 284