BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00001939
         (883 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [V...   222   3e-99
emb|CBI26820.3| unnamed protein product [Vitis vinifera]              222   3e-99
ref|XP_002311536.1| rna-dependent RNA polymerase [Populus tricho...   223   4e-97
emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]   213   2e-96
ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-li...   214   2e-94

>ref|XP_002284914.1| PREDICTED: RNA-dependent RNA polymerase 1 [Vitis vinifera]
          Length = 1121

 Score =  222 bits (566), Expect(2) = 3e-99
 Identities = 112/170 (65%), Positives = 125/170 (73%)
 Frame = -3

Query: 881  HDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADRELEKAESDACIELARLFSIAVDFPKT 702
            HDV IEEV+EYFTNYIVNDSLGIIANAHT FAD+E +KA  D C ELA+LFSIAVDFPKT
Sbjct: 839  HDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKT 898

Query: 701  GVPAVIPTRLHVKEYPDFMEKXXXXXXXXXXXXXXXXPDFMEKLDKPTYESHRVIGKLFR 522
            GVPA IP  L VKEYP                      DFMEK DKPTYES  VIGKLFR
Sbjct: 899  GVPAEIPRNLRVKEYP----------------------DFMEKADKPTYESQSVIGKLFR 936

Query: 521  AVKDIAPQTSCIKSFTKEIARRSYDRDMEIDGFEDYIEDAYYYKGEYDFK 372
             VKDIAP    I+SFT+++AR+SYD DME+ GFEDY+ DA+YYK EYD+K
Sbjct: 937  EVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYK 986



 Score =  166 bits (421), Expect(2) = 3e-99
 Identities = 70/96 (72%), Positives = 85/96 (88%)
 Frame = -2

Query: 288  MDYYGIKTEAELLGGSVMKMSKAFDKRRDLEGIELAVRSLKKEVRAWFDEKSSKSGCEAD 109
            MDYYGIKTE+E+L GS+M+MSK+FD+R+D E I LAV+SL+KE R WF++  S++  EAD
Sbjct: 991  MDYYGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEAD 1050

Query: 108  DIYAKASAWYHVTYHPDYWGCYNEGMGKDHFLSFPW 1
            D+YAKASAWYHVTYHPDYWGCYNEGM +DHFLSFPW
Sbjct: 1051 DVYAKASAWYHVTYHPDYWGCYNEGMDRDHFLSFPW 1086


>emb|CBI26820.3| unnamed protein product [Vitis vinifera]
          Length = 919

 Score =  222 bits (566), Expect(2) = 3e-99
 Identities = 112/170 (65%), Positives = 125/170 (73%)
 Frame = -3

Query: 881  HDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADRELEKAESDACIELARLFSIAVDFPKT 702
            HDV IEEV+EYFTNYIVNDSLGIIANAHT FAD+E +KA  D C ELA+LFSIAVDFPKT
Sbjct: 637  HDVMIEEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKT 696

Query: 701  GVPAVIPTRLHVKEYPDFMEKXXXXXXXXXXXXXXXXPDFMEKLDKPTYESHRVIGKLFR 522
            GVPA IP  L VKEYP                      DFMEK DKPTYES  VIGKLFR
Sbjct: 697  GVPAEIPRNLRVKEYP----------------------DFMEKADKPTYESQSVIGKLFR 734

Query: 521  AVKDIAPQTSCIKSFTKEIARRSYDRDMEIDGFEDYIEDAYYYKGEYDFK 372
             VKDIAP    I+SFT+++AR+SYD DME+ GFEDY+ DA+YYK EYD+K
Sbjct: 735  EVKDIAPHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYK 784



 Score =  166 bits (421), Expect(2) = 3e-99
 Identities = 70/96 (72%), Positives = 85/96 (88%)
 Frame = -2

Query: 288  MDYYGIKTEAELLGGSVMKMSKAFDKRRDLEGIELAVRSLKKEVRAWFDEKSSKSGCEAD 109
            MDYYGIKTE+E+L GS+M+MSK+FD+R+D E I LAV+SL+KE R WF++  S++  EAD
Sbjct: 789  MDYYGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEAD 848

Query: 108  DIYAKASAWYHVTYHPDYWGCYNEGMGKDHFLSFPW 1
            D+YAKASAWYHVTYHPDYWGCYNEGM +DHFLSFPW
Sbjct: 849  DVYAKASAWYHVTYHPDYWGCYNEGMDRDHFLSFPW 884


>ref|XP_002311536.1| rna-dependent RNA polymerase [Populus trichocarpa]
            gi|222851356|gb|EEE88903.1| rna-dependent RNA polymerase
            [Populus trichocarpa]
          Length = 1133

 Score =  223 bits (569), Expect(2) = 4e-97
 Identities = 111/170 (65%), Positives = 128/170 (75%)
 Frame = -3

Query: 881  HDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADRELEKAESDACIELARLFSIAVDFPKT 702
            HDVTIEEV+EYFTNYIVNDSLG+IANAHTA AD+E  KA S+ C+ELAR FSIAVDFPKT
Sbjct: 849  HDVTIEEVEEYFTNYIVNDSLGVIANAHTAHADKESLKAMSEPCVELARKFSIAVDFPKT 908

Query: 701  GVPAVIPTRLHVKEYPDFMEKXXXXXXXXXXXXXXXXPDFMEKLDKPTYESHRVIGKLFR 522
            GVPA IP+ L  +EYPDFMEK                       DKP+YES  VIGKLFR
Sbjct: 909  GVPAEIPSNLRAREYPDFMEKP----------------------DKPSYESRNVIGKLFR 946

Query: 521  AVKDIAPQTSCIKSFTKEIARRSYDRDMEIDGFEDYIEDAYYYKGEYDFK 372
             VKDIAP+TS I+SFT ++AR+ YD DME+DGFEDYI+DA+YYK  YD+K
Sbjct: 947  EVKDIAPRTSSIRSFTSDVARQCYDPDMEVDGFEDYIDDAFYYKSNYDYK 996



 Score =  158 bits (400), Expect(2) = 4e-97
 Identities = 71/96 (73%), Positives = 81/96 (84%)
 Frame = -2

Query: 288  MDYYGIKTEAELLGGSVMKMSKAFDKRRDLEGIELAVRSLKKEVRAWFDEKSSKSGCEAD 109
            M+YYGIKTEAELL GS MKMSK+F K+RD E I +AVRSLKKE R+WF+EK S    +AD
Sbjct: 1001 MEYYGIKTEAELLSGSFMKMSKSFTKKRDAEAIGMAVRSLKKEARSWFNEKGSGLDSQAD 1060

Query: 108  DIYAKASAWYHVTYHPDYWGCYNEGMGKDHFLSFPW 1
            D+ AKASAWYHVTYH +YWGCYNEGM +DHFLSFPW
Sbjct: 1061 DVDAKASAWYHVTYHHNYWGCYNEGMNRDHFLSFPW 1096


>emb|CAN82339.1| hypothetical protein VITISV_039922 [Vitis vinifera]
          Length = 654

 Score =  213 bits (541), Expect(2) = 2e-96
 Identities = 107/165 (64%), Positives = 121/165 (73%)
 Frame = -3

Query: 866 EEVQEYFTNYIVNDSLGIIANAHTAFADRELEKAESDACIELARLFSIAVDFPKTGVPAV 687
           +EV+EYFTNYIVNDSLGIIANAHT FAD+E +KA  D C ELA+LFSIAVDFPKTGVPA 
Sbjct: 377 KEVEEYFTNYIVNDSLGIIANAHTVFADKEYDKAYCDPCTELAKLFSIAVDFPKTGVPAE 436

Query: 686 IPTRLHVKEYPDFMEKXXXXXXXXXXXXXXXXPDFMEKLDKPTYESHRVIGKLFRAVKDI 507
           IP  L VKEYP                      DFMEK DKPTYES  VIGKLFR VKDI
Sbjct: 437 IPRNLRVKEYP----------------------DFMEKADKPTYESQSVIGKLFREVKDI 474

Query: 506 APQTSCIKSFTKEIARRSYDRDMEIDGFEDYIEDAYYYKGEYDFK 372
           AP    I+SFT+++AR+SYD DME+ GFEDY+ DA+YYK EYD+K
Sbjct: 475 APHNCNIRSFTRDVARQSYDPDMEVVGFEDYVSDAFYYKSEYDYK 519



 Score =  166 bits (421), Expect(2) = 2e-96
 Identities = 70/96 (72%), Positives = 85/96 (88%)
 Frame = -2

Query: 288 MDYYGIKTEAELLGGSVMKMSKAFDKRRDLEGIELAVRSLKKEVRAWFDEKSSKSGCEAD 109
           MDYYGIKTE+E+L GS+M+MSK+FD+R+D E I LAV+SL+KE R WF++  S++  EAD
Sbjct: 524 MDYYGIKTESEILSGSIMRMSKSFDRRKDAEAIGLAVKSLRKEARTWFNKMGSETDSEAD 583

Query: 108 DIYAKASAWYHVTYHPDYWGCYNEGMGKDHFLSFPW 1
           D+YAKASAWYHVTYHPDYWGCYNEGM +DHFLSFPW
Sbjct: 584 DVYAKASAWYHVTYHPDYWGCYNEGMDRDHFLSFPW 619


>ref|XP_003518619.1| PREDICTED: RNA-dependent RNA polymerase 1-like [Glycine max]
          Length = 1125

 Score =  214 bits (546), Expect(2) = 2e-94
 Identities = 108/170 (63%), Positives = 123/170 (72%)
 Frame = -3

Query: 881  HDVTIEEVQEYFTNYIVNDSLGIIANAHTAFADRELEKAESDACIELARLFSIAVDFPKT 702
            HDV IEEV+EYF NYIVNDSLGIIANAHT FAD+E  KA SD C++LARLFS AVDFPKT
Sbjct: 846  HDVMIEEVEEYFANYIVNDSLGIIANAHTVFADKEHLKAMSDQCVKLARLFSTAVDFPKT 905

Query: 701  GVPAVIPTRLHVKEYPDFMEKXXXXXXXXXXXXXXXXPDFMEKLDKPTYESHRVIGKLFR 522
            GVPAVIP  LHVKEYPDFMEK                       DKPTY+SH VIGKLFR
Sbjct: 906  GVPAVIPPELHVKEYPDFMEKP----------------------DKPTYKSHNVIGKLFR 943

Query: 521  AVKDIAPQTSCIKSFTKEIARRSYDRDMEIDGFEDYIEDAYYYKGEYDFK 372
             VK+I+     I SFTK +AR SYD +ME+DGF DY++DA+Y+K  YD+K
Sbjct: 944  EVKEISTSAGSITSFTKLVARDSYDHEMEVDGFMDYVDDAFYHKTNYDYK 993



 Score =  158 bits (399), Expect(2) = 2e-94
 Identities = 70/97 (72%), Positives = 82/97 (84%), Gaps = 1/97 (1%)
 Frame = -2

Query: 288  MDYYGIKTEAELLGGSVMKMSKAFDKRRDLEGIELAVRSLKKEVRAWFDEKSSKS-GCEA 112
            MDYYGIKTEAE+LGG++MKMSK+F+KRRD E I +AVRSL+KE RAWF+E SS      +
Sbjct: 998  MDYYGIKTEAEILGGNIMKMSKSFNKRRDAEAINMAVRSLRKEARAWFNENSSGDVDSGS 1057

Query: 111  DDIYAKASAWYHVTYHPDYWGCYNEGMGKDHFLSFPW 1
             D+YAKASAWYHVTYHP YWGCYNEGM +DH+LSF W
Sbjct: 1058 SDVYAKASAWYHVTYHPSYWGCYNEGMNRDHYLSFSW 1094