BLASTX nr result

ID: Coptis23_contig00001923 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00001923
         (515 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002271720.2| PREDICTED: uncharacterized protein LOC100264...   103   2e-20
gb|AAN62354.1|AF506028_23 CTV.22 [Citrus trifoliata]                   96   3e-18
ref|XP_002530460.1| transcription cofactor, putative [Ricinus co...    93   3e-17
ref|XP_002327402.1| predicted protein [Populus trichocarpa] gi|2...    92   6e-17
ref|XP_003597955.1| hypothetical protein MTR_2g104400 [Medicago ...    91   1e-16

>ref|XP_002271720.2| PREDICTED: uncharacterized protein LOC100264243 [Vitis vinifera]
          Length = 1671

 Score =  103 bits (256), Expect = 2e-20
 Identities = 55/95 (57%), Positives = 64/95 (67%)
 Frame = -2

Query: 514  TPLQSANSLFIVPSPSTPLAPSPIPGDSEKQASSISSPSNTGHVGHHQATATLAPAHSLA 335
            TPLQSANS F+VPSPSTPLAPSP+PG+SEK  S IS  +N G++GHHQ T  LAP  SLA
Sbjct: 1285 TPLQSANSPFVVPSPSTPLAPSPMPGESEKLNSGISLITNAGNIGHHQTTGALAPPPSLA 1344

Query: 334  IGKPGINVFCERCERTDLEDKVDTTHGSAQCSMKG 230
            IG PGI+      E T L    D  HG+A   + G
Sbjct: 1345 IGTPGISASPLLAEFTSL----DGNHGNASTMVSG 1375


>gb|AAN62354.1|AF506028_23 CTV.22 [Citrus trifoliata]
          Length = 1405

 Score = 95.9 bits (237), Expect = 3e-18
 Identities = 52/89 (58%), Positives = 60/89 (67%)
 Frame = -2

Query: 514  TPLQSANSLFIVPSPSTPLAPSPIPGDSEKQASSISSPSNTGHVGHHQATATLAPAHSLA 335
            TPLQS NS F+VPSPSTP+APSP+PGDSEK  S ISS SN G++GH Q T+  A A SLA
Sbjct: 1020 TPLQSVNSPFVVPSPSTPMAPSPMPGDSEKPISGISSLSNAGNIGHQQTTSAQAAAPSLA 1079

Query: 334  IGKPGINVFCERCERTDLEDKVDTTHGSA 248
            IG PGI+      E T      D  HG+A
Sbjct: 1080 IGTPGISASPLLAEFTG----PDGAHGNA 1104


>ref|XP_002530460.1| transcription cofactor, putative [Ricinus communis]
            gi|223530005|gb|EEF31930.1| transcription cofactor,
            putative [Ricinus communis]
          Length = 1382

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 46/67 (68%), Positives = 52/67 (77%)
 Frame = -2

Query: 514  TPLQSANSLFIVPSPSTPLAPSPIPGDSEKQASSISSPSNTGHVGHHQATATLAPAHSLA 335
            TPLQSANS F+V SPSTPLAPSP+PGDSEK  + ISS SN G++G  QAT   AP  SLA
Sbjct: 997  TPLQSANSPFVVQSPSTPLAPSPMPGDSEKPITGISSLSNAGNIGQQQATVAQAPVPSLA 1056

Query: 334  IGKPGIN 314
            IG PGI+
Sbjct: 1057 IGTPGIS 1063


>ref|XP_002327402.1| predicted protein [Populus trichocarpa] gi|222835956|gb|EEE74377.1|
            predicted protein [Populus trichocarpa]
          Length = 1204

 Score = 91.7 bits (226), Expect = 6e-17
 Identities = 53/95 (55%), Positives = 62/95 (65%)
 Frame = -2

Query: 514  TPLQSANSLFIVPSPSTPLAPSPIPGDSEKQASSISSPSNTGHVGHHQATATLAPAHSLA 335
            TPLQSANS F+VPSPSTPLAPSP+PGDS+K  S ISS  NTG++  HQ +   APA SLA
Sbjct: 820  TPLQSANSPFVVPSPSTPLAPSPMPGDSDKPVSGISSLLNTGNI-VHQPSVAQAPAPSLA 878

Query: 334  IGKPGINVFCERCERTDLEDKVDTTHGSAQCSMKG 230
            IG PGI+      E T      D  HG A  ++ G
Sbjct: 879  IGTPGISASPLLAEFT----SPDGAHGGALTTVSG 909


>ref|XP_003597955.1| hypothetical protein MTR_2g104400 [Medicago truncatula]
            gi|355487003|gb|AES68206.1| hypothetical protein
            MTR_2g104400 [Medicago truncatula]
          Length = 1289

 Score = 90.9 bits (224), Expect = 1e-16
 Identities = 50/95 (52%), Positives = 59/95 (62%)
 Frame = -2

Query: 514  TPLQSANSLFIVPSPSTPLAPSPIPGDSEKQASSISSPSNTGHVGHHQATATLAPAHSLA 335
            TP+QSANS FI+P+PS PLAPSP+PGD EK  S +SS SN  +VGH Q  +  APA SLA
Sbjct: 906  TPMQSANSPFIIPTPSPPLAPSPMPGDFEKPISGVSSISNVANVGHQQTGSGAAPAQSLA 965

Query: 334  IGKPGINVFCERCERTDLEDKVDTTHGSAQCSMKG 230
            IG PGI+      E T      D  HG+A     G
Sbjct: 966  IGTPGISASPLLAEFTG----PDGAHGNALAPSSG 996


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