BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00001902
         (717 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003610228.1| RING finger-like protein [Medicago truncatul...    97   3e-18
gb|AFK34620.1| unknown [Medicago truncatula]                           97   3e-18
ref|XP_004149098.1| PREDICTED: RING-H2 finger protein ATL56-like...    96   6e-18
dbj|BAH56864.1| AT2G18670 [Arabidopsis thaliana]                       91   2e-16
ref|NP_179457.1| RING-H2 finger protein ATL56 [Arabidopsis thali...    91   2e-16

>ref|XP_003610228.1| RING finger-like protein [Medicago truncatula]
           gi|355511283|gb|AES92425.1| RING finger-like protein
           [Medicago truncatula]
          Length = 182

 Score = 97.4 bits (241), Expect = 3e-18
 Identities = 60/170 (35%), Positives = 79/170 (46%), Gaps = 1/170 (0%)
 Frame = -3

Query: 649 HHHTHTPDDLPLPQRAQRMPKPKFLSFFLQSIIMLCIITLFFLFLGIATVFIIHICIAGX 470
           HHH   P+        Q  P P  LS FL+ IIML + +LFFLFLG A   ++++ +   
Sbjct: 4   HHHHGDPE--------QPKPNPNLLSLFLKPIIMLLLTSLFFLFLGFAAFLLLNLFLLAG 55

Query: 469 XXXXXXXXXXXXSFPFDYIDAEFNHFSSSCISEHDINKLPSYGYISVVKLLNCGATQEDC 290
                              DA             +IN LP++      ++     ++ D 
Sbjct: 56  ALHRLRFRPTPTRRLQSLTDA---------FLPREINNLPNF------RITKGSVSEPDS 100

Query: 289 -CAVCLDGFRENERFRILPGCKHVFHVGCIDVWLMKVSACPTCRGVVELN 143
            CAVCLDGFR  +  R L  C HVFH  CID WL+KV+ CPTCR  V  N
Sbjct: 101 RCAVCLDGFRNGQWCRNLAACGHVFHRRCIDTWLLKVATCPTCRTPVRSN 150


>gb|AFK34620.1| unknown [Medicago truncatula]
          Length = 182

 Score = 97.1 bits (240), Expect = 3e-18
 Identities = 60/170 (35%), Positives = 79/170 (46%), Gaps = 1/170 (0%)
 Frame = -3

Query: 649 HHHTHTPDDLPLPQRAQRMPKPKFLSFFLQSIIMLCIITLFFLFLGIATVFIIHICIAGX 470
           HHH   P+        Q  P P  LS FL+ IIML + +LFFLFLG A   ++++ +   
Sbjct: 4   HHHHGDPE--------QPKPNPNLLSLFLKPIIMLLLTSLFFLFLGFAAFLLLNLFLLAG 55

Query: 469 XXXXXXXXXXXXSFPFDYIDAEFNHFSSSCISEHDINKLPSYGYISVVKLLNCGATQEDC 290
                              DA             +IN LP++      ++     ++ D 
Sbjct: 56  ALHRLRFRPTPTRRLQSLTDA---------FLPREINNLPNF------RITKGSVSEPDS 100

Query: 289 -CAVCLDGFRENERFRILPGCKHVFHVGCIDVWLMKVSACPTCRGVVELN 143
            CAVCLDGFR  +  R L  C HVFH  CID WL+KV+ CPTCR  V  N
Sbjct: 101 RCAVCLDGFRNGQWRRNLAACGHVFHRRCIDTWLLKVATCPTCRTPVRSN 150


>ref|XP_004149098.1| PREDICTED: RING-H2 finger protein ATL56-like [Cucumis sativus]
           gi|449507961|ref|XP_004163179.1| PREDICTED: RING-H2
           finger protein ATL56-like [Cucumis sativus]
          Length = 178

 Score = 96.3 bits (238), Expect = 6e-18
 Identities = 59/151 (39%), Positives = 83/151 (54%), Gaps = 1/151 (0%)
 Frame = -3

Query: 592 PKPKFLSFFLQSIIMLCIITLFFLFLGIAT-VFIIHICIAGXXXXXXXXXXXXXSFPFDY 416
           P+ + LS  L+  IM+ + TLFF+FLG+AT + +IH+C+A                   Y
Sbjct: 23  PETQLLSLLLKIAIMILLTTLFFVFLGLATALLLIHLCVASALHRRRRFHSRHS----QY 78

Query: 415 IDAEFNHFSSSCISEHDINKLPSYGYISVVKLLNCGATQEDCCAVCLDGFRENERFRILP 236
            D      SSS  S  D+ KL  + + + V       +Q DC ++CLDGFR+ +  R L 
Sbjct: 79  SD------SSSGFSHRDLKKLLQFRFSNWVN----PHSQIDC-SICLDGFRKGQWCRRLG 127

Query: 235 GCKHVFHVGCIDVWLMKVSACPTCRGVVELN 143
           GC HV+H  CID WL++VSACP CR  V L+
Sbjct: 128 GCGHVYHRKCIDSWLVRVSACPLCRRCVRLD 158


>dbj|BAH56864.1| AT2G18670 [Arabidopsis thaliana]
          Length = 173

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 52/156 (33%), Positives = 70/156 (44%)
 Frame = -3

Query: 613 PQRAQRMPKPKFLSFFLQSIIMLCIITLFFLFLGIATVFIIHICIAGXXXXXXXXXXXXX 434
           P      PK + LS FL  +IM  I  LF + +GIA+V I+ + ++              
Sbjct: 10  PSHPPPKPKTRILSLFLVGVIMFSIFFLFLVLIGIASVLILPLLLSSLHRHHRRRRRNR- 68

Query: 433 SFPFDYIDAEFNHFSSSCISEHDINKLPSYGYISVVKLLNCGATQEDCCAVCLDGFRENE 254
                         SS  +S   + KLP + +       +     E  C VC DGFR+ +
Sbjct: 69  -----------RQESSDGLSSRFVKKLPQFKFSEP----STYTRYESDCVVCFDGFRQGQ 113

Query: 253 RFRILPGCKHVFHVGCIDVWLMKVSACPTCRGVVEL 146
             R LPGC HVFH  C+D WL+K S CP CR  V L
Sbjct: 114 WCRNLPGCGHVFHRKCVDTWLLKASTCPICRARVRL 149


>ref|NP_179457.1| RING-H2 finger protein ATL56 [Arabidopsis thaliana]
           gi|75339071|sp|Q9ZV51.1|ATL56_ARATH RecName:
           Full=RING-H2 finger protein ATL56
           gi|4185133|gb|AAD08936.1| putative RING zinc finger
           protein [Arabidopsis thaliana]
           gi|15450663|gb|AAK96603.1| At2g18670/MSF3.5 [Arabidopsis
           thaliana] gi|20466087|gb|AAM19965.1| At2g18670/MSF3.5
           [Arabidopsis thaliana] gi|66865918|gb|AAY57593.1| RING
           finger family protein [Arabidopsis thaliana]
           gi|330251697|gb|AEC06791.1| RING-H2 finger protein ATL56
           [Arabidopsis thaliana]
          Length = 181

 Score = 90.9 bits (224), Expect = 2e-16
 Identities = 52/156 (33%), Positives = 70/156 (44%)
 Frame = -3

Query: 613 PQRAQRMPKPKFLSFFLQSIIMLCIITLFFLFLGIATVFIIHICIAGXXXXXXXXXXXXX 434
           P      PK + LS FL  +IM  I  LF + +GIA+V I+ + ++              
Sbjct: 18  PSHPPPKPKTRILSLFLVGVIMFSIFFLFLVLIGIASVLILPLLLSSLHRHHRRRRRNR- 76

Query: 433 SFPFDYIDAEFNHFSSSCISEHDINKLPSYGYISVVKLLNCGATQEDCCAVCLDGFRENE 254
                         SS  +S   + KLP + +       +     E  C VC DGFR+ +
Sbjct: 77  -----------RQESSDGLSSRFVKKLPQFKFSEP----STYTRYESDCVVCFDGFRQGQ 121

Query: 253 RFRILPGCKHVFHVGCIDVWLMKVSACPTCRGVVEL 146
             R LPGC HVFH  C+D WL+K S CP CR  V L
Sbjct: 122 WCRNLPGCGHVFHRKCVDTWLLKASTCPICRARVRL 157