BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00001880
         (460 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002513003.1| ubiquitin fusion degradaton protein, putativ...    61   1e-07
ref|XP_002268781.1| PREDICTED: ubiquitin fusion degradation prot...    57   2e-06
emb|CBI37983.3| unnamed protein product [Vitis vinifera]               57   2e-06

>ref|XP_002513003.1| ubiquitin fusion degradaton protein, putative [Ricinus communis]
           gi|223548014|gb|EEF49506.1| ubiquitin fusion degradaton
           protein, putative [Ricinus communis]
          Length = 356

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 38/85 (44%), Positives = 42/85 (49%)
 Frame = +3

Query: 3   PVSSSELKDKRPEVAXXXXXXXXXXXXXXXXXRQHQGKLVFGSSANRAPKESQKSVXXXX 182
           PVSS   KDK+  V                  RQ QGKLVFGS+ NRAPKE+QK V    
Sbjct: 273 PVSSQGSKDKQAAVPSGRGQPSLESSSQNSA-RQSQGKLVFGSNVNRAPKETQKEVAKET 331

Query: 183 XXXXXXXXXXXXFQAFTGKKYSLKG 257
                       FQ FTG+KYSLKG
Sbjct: 332 KPEQSQKNEEPKFQPFTGRKYSLKG 356


>ref|XP_002268781.1| PREDICTED: ubiquitin fusion degradation protein 1 homolog [Vitis
           vinifera]
          Length = 319

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 37/85 (43%), Positives = 42/85 (49%)
 Frame = +3

Query: 3   PVSSSELKDKRPEVAXXXXXXXXXXXXXXXXXRQHQGKLVFGSSANRAPKESQKSVXXXX 182
           PVSSS  KDK+P                    RQ QGKLVFGS+ NR+PKE+QK      
Sbjct: 238 PVSSSGSKDKQP--VNRGSGQPSAGSSSQSSSRQSQGKLVFGSNVNRSPKETQKEA-AKA 294

Query: 183 XXXXXXXXXXXXFQAFTGKKYSLKG 257
                       FQ F+GKKYSLKG
Sbjct: 295 TKQEEPKKEEPKFQPFSGKKYSLKG 319


>emb|CBI37983.3| unnamed protein product [Vitis vinifera]
          Length = 309

 Score = 56.6 bits (135), Expect = 2e-06
 Identities = 37/85 (43%), Positives = 42/85 (49%)
 Frame = +3

Query: 3   PVSSSELKDKRPEVAXXXXXXXXXXXXXXXXXRQHQGKLVFGSSANRAPKESQKSVXXXX 182
           PVSSS  KDK+P                    RQ QGKLVFGS+ NR+PKE+QK      
Sbjct: 228 PVSSSGSKDKQP--VNRGSGQPSAGSSSQSSSRQSQGKLVFGSNVNRSPKETQKEA-AKA 284

Query: 183 XXXXXXXXXXXXFQAFTGKKYSLKG 257
                       FQ F+GKKYSLKG
Sbjct: 285 TKQEEPKKEEPKFQPFSGKKYSLKG 309