BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00001845
         (370 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283496.2| PREDICTED: pre-mRNA-processing factor 40 hom...    88   8e-16
emb|CBI19367.3| unnamed protein product [Vitis vinifera]               84   2e-14
ref|XP_003555303.1| PREDICTED: pre-mRNA-processing factor 40 hom...    76   3e-12
ref|XP_003535678.1| PREDICTED: pre-mRNA-processing factor 40 hom...    73   2e-11
tpg|DAA59092.1| TPA: hypothetical protein ZEAMMB73_081932 [Zea m...    61   1e-07

>ref|XP_002283496.2| PREDICTED: pre-mRNA-processing factor 40 homolog B-like [Vitis
           vinifera]
          Length = 1020

 Score = 87.8 bits (216), Expect = 8e-16
 Identities = 44/95 (46%), Positives = 58/95 (61%)
 Frame = +3

Query: 3   VLSKGCLFVEMTSNSHLPGVQPFWPPIGGSAGPPQNFAPPMFMQFQVSFPQQQANPFNMA 182
           +  + CL   M +N    G QP  PP  GS GP QNF PP+ MQF+ + P QQ +PF  A
Sbjct: 5   LFEEACLCAGMANNPQSSGAQPLRPPAVGSMGP-QNFGPPLSMQFRPAVPGQQGHPFIPA 63

Query: 183 ASQHFQPVGPGISASNMGLLAGQNQQQHYPEMMQQ 287
           ASQ F+P+G  IS+ N+G  +GQNQ   + + MQQ
Sbjct: 64  ASQQFRPIGQNISSPNVGGPSGQNQPPQFSQAMQQ 98


>emb|CBI19367.3| unnamed protein product [Vitis vinifera]
          Length = 1030

 Score = 83.6 bits (205), Expect = 2e-14
 Identities = 42/85 (49%), Positives = 54/85 (63%)
 Frame = +3

Query: 33  MTSNSHLPGVQPFWPPIGGSAGPPQNFAPPMFMQFQVSFPQQQANPFNMAASQHFQPVGP 212
           M +N    G QP  PP  GS GP QNF PP+ MQF+ + P QQ +PF  AASQ F+P+G 
Sbjct: 1   MANNPQSSGAQPLRPPAVGSMGP-QNFGPPLSMQFRPAVPGQQGHPFIPAASQQFRPIGQ 59

Query: 213 GISASNMGLLAGQNQQQHYPEMMQQ 287
            IS+ N+G  +GQNQ   + + MQQ
Sbjct: 60  NISSPNVGGPSGQNQPPQFSQAMQQ 84


>ref|XP_003555303.1| PREDICTED: pre-mRNA-processing factor 40 homolog A-like [Glycine
           max]
          Length = 1072

 Score = 75.9 bits (185), Expect = 3e-12
 Identities = 40/88 (45%), Positives = 55/88 (62%), Gaps = 3/88 (3%)
 Frame = +3

Query: 33  MTSNSHLPGVQPFWPPIGGSAGPPQNFAPPMFMQFQVSFPQQQANPFNMAASQHF--QPV 206
           M++N   PG+QP  PPI GS  PP+NF PPM +QF+ + P QQ+  F    SQH+  QPV
Sbjct: 1   MSNNPQYPGLQPLRPPIAGSLDPPRNFVPPMPVQFRPAVPTQQSQQFISMPSQHYQHQPV 60

Query: 207 GP-GISASNMGLLAGQNQQQHYPEMMQQ 287
           GP G+    +G +  QNQQ  + + +QQ
Sbjct: 61  GPGGVPLIGVG-IPPQNQQPQFSQPIQQ 87


>ref|XP_003535678.1| PREDICTED: pre-mRNA-processing factor 40 homolog B-like [Glycine
           max]
          Length = 1017

 Score = 73.2 bits (178), Expect = 2e-11
 Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 3/88 (3%)
 Frame = +3

Query: 33  MTSNSHLPGVQPFWPPIGGSAGPPQNFAPPMFMQFQVSFPQQQANPFNMAASQHF--QPV 206
           M +N   PG+QP  PPI GS  PP+NF PPM +QF+   P QQ+  F    SQH+  QPV
Sbjct: 1   MANNPQYPGLQPLRPPIAGSLDPPRNFVPPMPVQFRPVVPTQQSQQFISMPSQHYQHQPV 60

Query: 207 GP-GISASNMGLLAGQNQQQHYPEMMQQ 287
           GP G+    +G +  QNQ+  + + +QQ
Sbjct: 61  GPGGVPLIGVG-MPPQNQRSQFSQPIQQ 87


>tpg|DAA59092.1| TPA: hypothetical protein ZEAMMB73_081932 [Zea mays]
          Length = 406

 Score = 60.8 bits (146), Expect = 1e-07
 Identities = 33/82 (40%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
 Frame = +3

Query: 33  MTSNSHLPGV-QPFWPPIGGSAGPPQNFAPPMFMQFQVSFPQQQANPFNMAASQHFQPVG 209
           M SN    G+ QP  PP+ GS+  PQN  PPM MQF+   P Q    F   A+Q F+PVG
Sbjct: 1   MASNMQSSGLPQPPRPPMMGSSAQPQNLGPPMPMQFRPVMPSQHPPQFMPPAAQQFRPVG 60

Query: 210 PGISASNMGLLAGQNQQQHYPE 275
             ++ +N+G+     Q  H+P+
Sbjct: 61  EPMAGANVGM---PGQMPHFPQ 79