BLASTX nr result
ID: Coptis23_contig00001817
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00001817
(6194 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II su... 2825 0.0
ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II su... 2765 0.0
ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed... 2765 0.0
ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [S... 2726 0.0
ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II su... 2726 0.0
>ref|XP_002285900.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Vitis
vinifera]
Length = 1848
Score = 2825 bits (7323), Expect = 0.0
Identities = 1404/1538 (91%), Positives = 1457/1538 (94%)
Frame = +1
Query: 94 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 273
MDMRFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI
Sbjct: 1 MDMRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 60
Query: 274 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDSK 453
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDHK 120
Query: 454 FKQAQRIRNPKHRLKKVLDACKNKLKCEGGDDSDAQGQDLDEPVKKSRGGCGAQQPKITI 633
FKQAQ+IRNPK+RLKK+LDACKNK KCEGGD+ + Q D DEPVKKSRGGCGAQQPK+TI
Sbjct: 121 FKQAQKIRNPKNRLKKILDACKNKSKCEGGDEIETQALDSDEPVKKSRGGCGAQQPKLTI 180
Query: 634 DGMKMVAEYKAQRKKSDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCVLLGLDPKYAR 813
+GMKM+AEYK QRKK+DD EQLPEPVERKQQLSAERVL+VLKRISDEDC+LLGL+PKYAR
Sbjct: 181 EGMKMIAEYKIQRKKNDDPEQLPEPVERKQQLSAERVLNVLKRISDEDCILLGLNPKYAR 240
Query: 814 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 993
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 300
Query: 994 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1173
EFAQLLQFH+ATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHVATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1174 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 1353
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1354 EDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDYVLFNRQPSLHKMSIMGHRIKIMPYST 1533
EDGQRLDLRYLKKSSDHHLELGYKVERHL DGD+VLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 EDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1534 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1713
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1714 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKXXXXXXXXXXXXWTGKQVFNLIIPKQIN 1893
LLGCRKITKRDTFIEKDVFMNILMWWEDFDGK WTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKIPAPAILKPRPLWTGKQVFNLIIPKQIN 600
Query: 1894 LMRTSAWHSEAETGFITPGDTQVRIERXXXXXXXXXXXXXXXXXXSLIHVIWEEVGPDAA 2073
L+RTSAWHSE+ETGFITPGDTQVRIE+ SLIHVIWEEVGPDAA
Sbjct: 601 LLRTSAWHSESETGFITPGDTQVRIEKGELLAGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2074 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINKTISDAKDEVKDLIKHAQEKQL 2253
RKFLGHTQWLVNYWLLQN FSIGIGDTIADAATMEKIN+TIS AK+EVK+LI+ AQE+QL
Sbjct: 661 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADAATMEKINETISKAKNEVKELIRAAQERQL 720
Query: 2254 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2433
E EPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2434 ACVGQQNVEGKRIPYGFLDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2613
ACVGQQNVEGKRIPYGF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2614 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 2793
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+QK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 2794 LDSLKMKQSEFDDVFRYELDTENWLPIYMLPEHVEDMKTIREFRSVFDAEAEKLRVDRLQ 2973
LDSLKMK+ EFD VF+YE+D ENW P YMLPEHVED+KTIREFR+VFDAE +KL DR Q
Sbjct: 901 LDSLKMKKGEFDRVFKYEIDDENWNPSYMLPEHVEDLKTIREFRNVFDAEVQKLEADRFQ 960
Query: 2974 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRASDMHPMEIVEAVDKLQERLKVVP 3153
LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRR SDMHPMEIVEAVDKLQERLKVVP
Sbjct: 961 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRPSDMHPMEIVEAVDKLQERLKVVP 1020
Query: 3154 GDDFLSLEAQKNATLFFNILLRSTFASKRVLKEYRLSKEAFDWVIGEIETRFLQSLVAPG 3333
GDD +S+EAQKNATLFFNILLRSTFASKRVLKEYRL++EAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1021 GDDLISMEAQKNATLFFNILLRSTFASKRVLKEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 3334 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3513
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1140
Query: 3514 PEVNKTKEAAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVRSYYEMPDEEV 3693
P+V+KTKE AK+VQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFV+SYYEMPDEEV
Sbjct: 1141 PDVSKTKERAKNVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVKSYYEMPDEEV 1200
Query: 3694 DPEKISPWLLRIELNREMMVDKKLNMMDIAGKINHEFDDDLTCIFNDDNAEKLILRIRIM 3873
PEKISPWLLRIELNREMMVDKKL+M DIA KIN EFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 3874 NDEAPKGEMQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDEAEGFKP 4053
NDEAPKGE+QDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVN+FDE+EGFKP
Sbjct: 1261 NDEAPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNKFDESEGFKP 1320
Query: 4054 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 4233
E+EWMLDTEGVNLLAVM HEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EVEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 4234 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 4413
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDF 1440
Query: 4414 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELHLPSYMDGGGLDFGVTPSRSPITG 4593
LRGVTENIMLGQLAPIGTGDCALYLNDQMLQ AIEL LPSYM+ GLDFG+TPSRSPITG
Sbjct: 1441 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQHAIELQLPSYME--GLDFGMTPSRSPITG 1498
Query: 4594 TPYHDGMMSPNYALSPNIRSSPFNSDAVFSPYVGGMAF 4707
TPYHDGMMSPNY LSPN+R SP +DA FSPYVGGMAF
Sbjct: 1499 TPYHDGMMSPNYLLSPNLRLSPI-TDAQFSPYVGGMAF 1535
Score = 88.2 bits (217), Expect = 3e-14
Identities = 39/45 (86%), Positives = 42/45 (93%)
Frame = +1
Query: 5512 GASPDYSPSTPQYSPSAGYSPTAPGYSPSSTSQYTPQLSTKDEGS 5646
G SPDYSPS+PQYSPSAGYSP+APGYSPSSTSQYTPQ+S KD GS
Sbjct: 1802 GVSPDYSPSSPQYSPSAGYSPSAPGYSPSSTSQYTPQMSNKDNGS 1846
>ref|XP_004169177.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Cucumis
sativus]
Length = 1853
Score = 2765 bits (7167), Expect = 0.0
Identities = 1374/1538 (89%), Positives = 1439/1538 (93%)
Frame = +1
Query: 94 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 273
MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 274 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDSK 453
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVL+IMR VCFNCSKIL DEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 454 FKQAQRIRNPKHRLKKVLDACKNKLKCEGGDDSDAQGQDLDEPVKKSRGGCGAQQPKITI 633
FKQA RI+NPK+RL+K+LDACKNK KCEGGD+ D QGQD D+PVKKSRGGCGAQQPKI+I
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 634 DGMKMVAEYKAQRKKSDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCVLLGLDPKYAR 813
+GMKM AEYKAQRKK+DD EQLPEPVERKQ L+AERVL +LKRI+DEDC LLGL+PKYAR
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 814 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 993
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 994 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1173
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1174 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 1353
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1354 EDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDYVLFNRQPSLHKMSIMGHRIKIMPYST 1533
+DGQRLDLRYLKKSSDHHLELGYKVERHL DGD+VLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1534 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1713
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1714 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKXXXXXXXXXXXXWTGKQVFNLIIPKQIN 1893
LLGCRKITKRDTFI KDVFMN LMWWEDFDGK WTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 1894 LMRTSAWHSEAETGFITPGDTQVRIERXXXXXXXXXXXXXXXXXXSLIHVIWEEVGPDAA 2073
L RTSAWHSE+ETG ITPGDT VRIE+ SLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 2074 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINKTISDAKDEVKDLIKHAQEKQL 2253
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKIN+TIS AK+EVK+LIK AQE+ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 2254 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2433
EPEPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2434 ACVGQQNVEGKRIPYGFLDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2613
ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2614 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 2793
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2794 LDSLKMKQSEFDDVFRYELDTENWLPIYMLPEHVEDMKTIREFRSVFDAEAEKLRVDRLQ 2973
LDSLKMK+ EF+ +FRYE + ENW P YMLPEHVED+KTIREFR+VF+AE +KL DR Q
Sbjct: 901 LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 2974 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRASDMHPMEIVEAVDKLQERLKVVP 3153
LGTEIATTG+NSWPMPVNLKRLI NAQKTFK+D RRASDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961 LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
Query: 3154 GDDFLSLEAQKNATLFFNILLRSTFASKRVLKEYRLSKEAFDWVIGEIETRFLQSLVAPG 3333
G+D LS+EAQKNATLFFNILLRSTFASKRVL EYRL++EAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 3334 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3513
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 3514 PEVNKTKEAAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVRSYYEMPDEEV 3693
PE NKTKE AK+VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED+DFV+SYYEMPDEE+
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
Query: 3694 DPEKISPWLLRIELNREMMVDKKLNMMDIAGKINHEFDDDLTCIFNDDNAEKLILRIRIM 3873
PEKISPWLLRIELNREMMVDKKL+M +IA KIN EFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 3874 NDEAPKGEMQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDEAEGFKP 4053
NDEAPKGE+ DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GKVN+FDE EGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
Query: 4054 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 4233
EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 4234 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 4413
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 4414 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELHLPSYMDGGGLDFGVTPSRSPITG 4593
LRGVTENIMLGQLAPIGTG CALYLND+ML+ AIEL LPSY+D GLDFG+TPSRSPI+G
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYID--GLDFGMTPSRSPISG 1498
Query: 4594 TPYHDGMMSPNYALSPNIRSSPFNSDAVFSPYVGGMAF 4707
TPYH+GMMSPNY LSPN+R SP SDA FSPYVGGMAF
Sbjct: 1499 TPYHEGMMSPNYLLSPNLRLSPI-SDAQFSPYVGGMAF 1535
Score = 87.8 bits (216), Expect = 3e-14
Identities = 42/51 (82%), Positives = 45/51 (88%)
Frame = +1
Query: 5512 GASPDYSPSTPQYSPSAGYSPTAPGYSPSSTSQYTPQLSTKDEGSKRSKKD 5664
G SPDYSPS+PQYSPSAGYSPTAPGYSPSSTSQYTPQ S KD+ RS+KD
Sbjct: 1802 GPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSDKDD---RSRKD 1849
>ref|XP_004146161.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II
subunit RPB1-like [Cucumis sativus]
Length = 1832
Score = 2765 bits (7167), Expect = 0.0
Identities = 1374/1538 (89%), Positives = 1439/1538 (93%)
Frame = +1
Query: 94 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 273
MD+RFP+SPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GLSDPRLGTI
Sbjct: 1 MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
Query: 274 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDSK 453
DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVL+IMR VCFNCSKIL DEED K
Sbjct: 61 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
Query: 454 FKQAQRIRNPKHRLKKVLDACKNKLKCEGGDDSDAQGQDLDEPVKKSRGGCGAQQPKITI 633
FKQA RI+NPK+RL+K+LDACKNK KCEGGD+ D QGQD D+PVKKSRGGCGAQQPKI+I
Sbjct: 121 FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180
Query: 634 DGMKMVAEYKAQRKKSDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCVLLGLDPKYAR 813
+GMKM AEYKAQRKK+DD EQLPEPVERKQ L+AERVL +LKRI+DEDC LLGL+PKYAR
Sbjct: 181 EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240
Query: 814 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 993
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
Query: 994 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1173
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1174 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 1353
TVITPDPTINID+LGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1354 EDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDYVLFNRQPSLHKMSIMGHRIKIMPYST 1533
+DGQRLDLRYLKKSSDHHLELGYKVERHL DGD+VLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1534 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1713
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1714 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKXXXXXXXXXXXXWTGKQVFNLIIPKQIN 1893
LLGCRKITKRDTFI KDVFMN LMWWEDFDGK WTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600
Query: 1894 LMRTSAWHSEAETGFITPGDTQVRIERXXXXXXXXXXXXXXXXXXSLIHVIWEEVGPDAA 2073
L RTSAWHSE+ETG ITPGDT VRIE+ SLIHVIWEEVGPDAA
Sbjct: 601 LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660
Query: 2074 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINKTISDAKDEVKDLIKHAQEKQL 2253
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKIN+TIS AK+EVK+LIK AQE+ L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
Query: 2254 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2433
EPEPGRTMM+SFEN+VNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2434 ACVGQQNVEGKRIPYGFLDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2613
ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2614 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 2793
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
Query: 2794 LDSLKMKQSEFDDVFRYELDTENWLPIYMLPEHVEDMKTIREFRSVFDAEAEKLRVDRLQ 2973
LDSLKMK+ EF+ +FRYE + ENW P YMLPEHVED+KTIREFR+VF+AE +KL DR Q
Sbjct: 901 LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 2974 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRASDMHPMEIVEAVDKLQERLKVVP 3153
LGTEIATTG+NSWPMPVNLKRLI NAQKTFK+D RRASDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961 LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
Query: 3154 GDDFLSLEAQKNATLFFNILLRSTFASKRVLKEYRLSKEAFDWVIGEIETRFLQSLVAPG 3333
G+D LS+EAQKNATLFFNILLRSTFASKRVL EYRL++EAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
Query: 3334 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3513
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
Query: 3514 PEVNKTKEAAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVRSYYEMPDEEV 3693
PE NKTKE AK+VQCALEYTTLRSVTQATEVWYDPDPMSTIIEED+DFV+SYYEMPDEE+
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
Query: 3694 DPEKISPWLLRIELNREMMVDKKLNMMDIAGKINHEFDDDLTCIFNDDNAEKLILRIRIM 3873
PEKISPWLLRIELNREMMVDKKL+M +IA KIN EFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 3874 NDEAPKGEMQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDEAEGFKP 4053
NDEAPKGE+ DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK GKVN+FDE EGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
Query: 4054 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 4233
EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
Query: 4234 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 4413
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
Query: 4414 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELHLPSYMDGGGLDFGVTPSRSPITG 4593
LRGVTENIMLGQLAPIGTG CALYLND+ML+ AIEL LPSY+D GLDFG+TPSRSPI+G
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYID--GLDFGMTPSRSPISG 1498
Query: 4594 TPYHDGMMSPNYALSPNIRSSPFNSDAVFSPYVGGMAF 4707
TPYH+GMMSPNY LSPN+R SP SDA FSPYVGGMAF
Sbjct: 1499 TPYHEGMMSPNYLLSPNLRLSPI-SDAQFSPYVGGMAF 1535
Score = 87.8 bits (216), Expect = 3e-14
Identities = 42/51 (82%), Positives = 45/51 (88%)
Frame = +1
Query: 5512 GASPDYSPSTPQYSPSAGYSPTAPGYSPSSTSQYTPQLSTKDEGSKRSKKD 5664
G SPDYSPS+PQYSPSAGYSPTAPGYSPSSTSQYTPQ S KD+ RS+KD
Sbjct: 1781 GPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSDKDD---RSRKD 1828
>ref|XP_002443877.1| hypothetical protein SORBIDRAFT_07g003680 [Sorghum bicolor]
gi|241940227|gb|EES13372.1| hypothetical protein
SORBIDRAFT_07g003680 [Sorghum bicolor]
Length = 1857
Score = 2726 bits (7067), Expect = 0.0
Identities = 1351/1538 (87%), Positives = 1426/1538 (92%)
Frame = +1
Query: 94 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 273
MD RFP+SPAEVAKV +VQFGILSPDEIRQMSVVQIEH+ET ERGKPKPGGLSDPRLGTI
Sbjct: 1 MDARFPYSPAEVAKVELVQFGILSPDEIRQMSVVQIEHAETMERGKPKPGGLSDPRLGTI 60
Query: 274 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDSK 453
DRK+KCETC A MAECPGHFGHLELAKPMFHIGF+KTVLSIMRCVCFNCSKILADE+++K
Sbjct: 61 DRKIKCETCMAGMAECPGHFGHLELAKPMFHIGFIKTVLSIMRCVCFNCSKILADEDETK 120
Query: 454 FKQAQRIRNPKHRLKKVLDACKNKLKCEGGDDSDAQGQDLDEPVKKSRGGCGAQQPKITI 633
FKQA +IRNPK+RLK++ DACK+K C GGDD D Q QD DEPVKK RGGCGAQQP IT+
Sbjct: 121 FKQALKIRNPKNRLKRIYDACKSKKVCAGGDDLDVQEQDTDEPVKK-RGGCGAQQPNITV 179
Query: 634 DGMKMVAEYKAQRKKSDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCVLLGLDPKYAR 813
DGMKMVAE+KA +KKSDDQ+QLPEPVERKQ LSAERVL+VLKRISDEDC+LLGL+PKYAR
Sbjct: 180 DGMKMVAEFKAPKKKSDDQDQLPEPVERKQILSAERVLNVLKRISDEDCLLLGLNPKYAR 239
Query: 814 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 993
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHII+
Sbjct: 240 PDWMILQVLPVPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIT 299
Query: 994 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1173
EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 300 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 359
Query: 1174 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 1353
TVITPDP INID+LGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 360 TVITPDPNINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 419
Query: 1354 EDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDYVLFNRQPSLHKMSIMGHRIKIMPYST 1533
EDGQRLDLRY+KKSSD HLELGYKVERHL DGD+VLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 420 EDGQRLDLRYVKKSSDQHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 479
Query: 1534 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1713
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 480 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 539
Query: 1714 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKXXXXXXXXXXXXWTGKQVFNLIIPKQIN 1893
LLGCRKITKRDT IEKDVFMNILMWW+DFDGK WTGKQVFNLIIPKQIN
Sbjct: 540 LLGCRKITKRDTLIEKDVFMNILMWWQDFDGKIPAPAILKPRPIWTGKQVFNLIIPKQIN 599
Query: 1894 LMRTSAWHSEAETGFITPGDTQVRIERXXXXXXXXXXXXXXXXXXSLIHVIWEEVGPDAA 2073
L+R SAWHSE E GFITPGDT VRIE+ SLIH+IWEEVGPDAA
Sbjct: 600 LIRFSAWHSEEEKGFITPGDTMVRIEKGELLSGTLCKKSLGTGTGSLIHIIWEEVGPDAA 659
Query: 2074 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINKTISDAKDEVKDLIKHAQEKQL 2253
RKFLGHTQWLVNYWLLQN FSIGIGDTIADA+TM+ IN TI AKDEVK+LIK A EKQL
Sbjct: 660 RKFLGHTQWLVNYWLLQNGFSIGIGDTIADASTMQTINDTICKAKDEVKELIKKAHEKQL 719
Query: 2254 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2433
E EPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 720 EAEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 779
Query: 2434 ACVGQQNVEGKRIPYGFLDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2613
ACVGQQNVEGKRIP+GF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 780 ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 839
Query: 2614 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 2793
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIESQK
Sbjct: 840 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 899
Query: 2794 LDSLKMKQSEFDDVFRYELDTENWLPIYMLPEHVEDMKTIREFRSVFDAEAEKLRVDRLQ 2973
LDSLKMK+ EFD++FRYELD ENW P YMLPEHV+D+KTIREFR+VF+AE +KL DR Q
Sbjct: 900 LDSLKMKKPEFDNLFRYELDDENWRPNYMLPEHVDDLKTIREFRNVFEAEVQKLEADRYQ 959
Query: 2974 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRASDMHPMEIVEAVDKLQERLKVVP 3153
LGTEIATTGDNSWPMPVNLKRLIWNAQKTF++D RR SDMHPMEIVEAVDKLQERLKVVP
Sbjct: 960 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFRIDFRRPSDMHPMEIVEAVDKLQERLKVVP 1019
Query: 3154 GDDFLSLEAQKNATLFFNILLRSTFASKRVLKEYRLSKEAFDWVIGEIETRFLQSLVAPG 3333
GDD +S+EAQKNATLFFNILLRSTFASKRVLKEYRL+KEAF+WVIGEIE+RFLQSLVAPG
Sbjct: 1020 GDDPMSIEAQKNATLFFNILLRSTFASKRVLKEYRLTKEAFEWVIGEIESRFLQSLVAPG 1079
Query: 3334 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3513
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK
Sbjct: 1080 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 1139
Query: 3514 PEVNKTKEAAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVRSYYEMPDEEV 3693
PEVN+ KE AK+VQCALEYTTLRSVT ATE+WYDPDP+ TIIEED +FV+SYYEMPDE++
Sbjct: 1140 PEVNQKKELAKNVQCALEYTTLRSVTHATEIWYDPDPLGTIIEEDAEFVQSYYEMPDEDI 1199
Query: 3694 DPEKISPWLLRIELNREMMVDKKLNMMDIAGKINHEFDDDLTCIFNDDNAEKLILRIRIM 3873
DP+KISPWLLRIELNREMMVDKKL+M DIA KIN EFDDDL+CIFNDDNA+KLILRIRI
Sbjct: 1200 DPDKISPWLLRIELNREMMVDKKLSMADIADKINREFDDDLSCIFNDDNADKLILRIRIT 1259
Query: 3874 NDEAPKGEMQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDEAEGFKP 4053
NDEAPKGE+QDESAEDDVFLKKIE NMLTEMALRGIPDINKVFIK GKVN F + EGFK
Sbjct: 1260 NDEAPKGEIQDESAEDDVFLKKIEGNMLTEMALRGIPDINKVFIKEGKVNTFYQDEGFKA 1319
Query: 4054 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 4233
EWMLDTEGVNLLAVM HEDVDA RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1320 ANEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1379
Query: 4234 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 4413
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAAVYAE+DH
Sbjct: 1380 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAVYAESDH 1439
Query: 4414 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELHLPSYMDGGGLDFGVTPSRSPITG 4593
LRGVTENIMLGQLAPIGTG CALYLNDQMLQQAIEL LPSY++ GLDFG+TP+RSPI+G
Sbjct: 1440 LRGVTENIMLGQLAPIGTGGCALYLNDQMLQQAIELQLPSYVE--GLDFGMTPARSPISG 1497
Query: 4594 TPYHDGMMSPNYALSPNIRSSPFNSDAVFSPYVGGMAF 4707
TPYH+GMMSP+Y LSPNIR+SP N+DA FSPYVG MAF
Sbjct: 1498 TPYHEGMMSPSYLLSPNIRASPINTDASFSPYVGHMAF 1535
Score = 62.0 bits (149), Expect = 2e-06
Identities = 30/47 (63%), Positives = 34/47 (72%)
Frame = +1
Query: 5512 GASPDYSPSTPQYSPSAGYSPTAPGYSPSSTSQYTPQLSTKDEGSKR 5652
G SPDYSP++P YSPS YSPTAPGYSPSST Q + KD+ S R
Sbjct: 1815 GPSPDYSPTSPNYSPSGSYSPTAPGYSPSSTGQG----NDKDDESNR 1857
>ref|XP_003537656.1| PREDICTED: DNA-directed RNA polymerase II subunit RPB1-like [Glycine
max]
Length = 1827
Score = 2726 bits (7066), Expect = 0.0
Identities = 1359/1538 (88%), Positives = 1427/1538 (92%)
Frame = +1
Query: 94 MDMRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHSETTERGKPKPGGLSDPRLGTI 273
MD+RFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEH ETTERGKPK GGLSDPRLGTI
Sbjct: 1 MDIRFPFSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVGGLSDPRLGTI 60
Query: 274 DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLSIMRCVCFNCSKILADEEDSK 453
DRK+KCETCTA+MAECPGHFGHLELAKPMFHIGF+KTVL+IMRCVCFNCSKILADE D K
Sbjct: 61 DRKLKCETCTASMAECPGHFGHLELAKPMFHIGFLKTVLTIMRCVCFNCSKILADENDHK 120
Query: 454 FKQAQRIRNPKHRLKKVLDACKNKLKCEGGDDSDAQGQDLDEPVKKSRGGCGAQQPKITI 633
FKQA RIRNPK+RLKK+LDACKNK KCEGGD+ D GQD DEPVKKSRGGCGAQQPKITI
Sbjct: 121 FKQALRIRNPKNRLKKILDACKNKSKCEGGDEIDIPGQDTDEPVKKSRGGCGAQQPKITI 180
Query: 634 DGMKMVAEYKAQRKKSDDQEQLPEPVERKQQLSAERVLSVLKRISDEDCVLLGLDPKYAR 813
+GMKM+AEYKAQRKKSDDQEQLPEPVERKQ LSAERVL VLKRISDEDC LLGL+PKYAR
Sbjct: 181 EGMKMIAEYKAQRKKSDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCQLLGLNPKYAR 240
Query: 814 PDWMILQVLXXXXXXXXXSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGAPAHIIS 993
PDWMILQVL SVMMDTSSRSEDDLTHQLAMIIRHNENL+RQERNG+PAHIIS
Sbjct: 241 PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLKRQERNGSPAHIIS 300
Query: 994 EFAQLLQFHIATYFDNELPGQPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 1173
EFAQLLQFHIATYFDNELPG PRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301 EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
Query: 1174 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVENGPHPPPGKTGAKYIIR 1353
TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVE GPHPPPGKTGAKYIIR
Sbjct: 361 TVITPDPTINIDQLGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
Query: 1354 EDGQRLDLRYLKKSSDHHLELGYKVERHLIDGDYVLFNRQPSLHKMSIMGHRIKIMPYST 1533
+DGQRLDLRYLKKSSDHHLELGYKVERHL DGD+VLFNRQPSLHKMSIMGHRIKIMPYST
Sbjct: 421 DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480
Query: 1534 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQDT 1713
FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQ+NRPVMGIVQDT
Sbjct: 481 FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540
Query: 1714 LLGCRKITKRDTFIEKDVFMNILMWWEDFDGKXXXXXXXXXXXXWTGKQVFNLIIPKQIN 1893
LLGCRKITKRDTFI KDVFMNILMWWEDFDGK WTGKQVFNLIIPKQIN
Sbjct: 541 LLGCRKITKRDTFITKDVFMNILMWWEDFDGKVPAPAILKPEPLWTGKQVFNLIIPKQIN 600
Query: 1894 LMRTSAWHSEAETGFITPGDTQVRIERXXXXXXXXXXXXXXXXXXSLIHVIWEEVGPDAA 2073
L+R S+WHSE+E G ITPGDT VRIE+ SLIHVIWEEVGPDAA
Sbjct: 601 LIRYSSWHSESERGSITPGDTMVRIEKGELLTGTLCKKTLGTSTGSLIHVIWEEVGPDAA 660
Query: 2074 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINKTISDAKDEVKDLIKHAQEKQL 2253
RKFLGHTQWLVNYWLLQNAFSIGIGDTIADA+TME IN+TIS AK++VK LI+ AQEK+L
Sbjct: 661 RKFLGHTQWLVNYWLLQNAFSIGIGDTIADASTMETINQTISAAKEKVKQLIREAQEKKL 720
Query: 2254 EPEPGRTMMESFENRVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 2433
E EPGRTMM+SFENRVNQ LN+ARDDAG+SAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721 EAEPGRTMMDSFENRVNQTLNRARDDAGNSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
Query: 2434 ACVGQQNVEGKRIPYGFLDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 2613
ACVGQQNVEGKRIPYGF+DRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781 ACVGQQNVEGKRIPYGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
Query: 2614 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDSVWIESQK 2793
GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMD+VWIE+QK
Sbjct: 841 GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIETQK 900
Query: 2794 LDSLKMKQSEFDDVFRYELDTENWLPIYMLPEHVEDMKTIREFRSVFDAEAEKLRVDRLQ 2973
LDSLKMK++EFD VFRYE D ENW P YML E VED+KTIREFR+VF+AE +KL DR Q
Sbjct: 901 LDSLKMKKTEFDRVFRYEFDDENWKPTYMLEEPVEDLKTIREFRNVFEAEVQKLEADRYQ 960
Query: 2974 LGTEIATTGDNSWPMPVNLKRLIWNAQKTFKVDLRRASDMHPMEIVEAVDKLQERLKVVP 3153
L TEIATTGD+S P+PVNLKRLIWNAQKTFKVD RR SDMHPMEIVEA+DKLQERLKVVP
Sbjct: 961 LATEIATTGDSSLPLPVNLKRLIWNAQKTFKVDFRRPSDMHPMEIVEAIDKLQERLKVVP 1020
Query: 3154 GDDFLSLEAQKNATLFFNILLRSTFASKRVLKEYRLSKEAFDWVIGEIETRFLQSLVAPG 3333
G+D LS EAQKNATL FNILLRSTFASKRVL+EYRLS+EAF+WV+GEIE+RFLQSLVA G
Sbjct: 1021 GEDLLSQEAQKNATLLFNILLRSTFASKRVLEEYRLSREAFEWVVGEIESRFLQSLVASG 1080
Query: 3334 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKKIKTPSLSVYLK 3513
EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAK+IKTPSLSVYL+
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLR 1140
Query: 3514 PEVNKTKEAAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDVDFVRSYYEMPDEEV 3693
+V KTKE AKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEED DFV+SYYEMPDEEV
Sbjct: 1141 SDVGKTKERAKSVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDADFVKSYYEMPDEEV 1200
Query: 3694 DPEKISPWLLRIELNREMMVDKKLNMMDIAGKINHEFDDDLTCIFNDDNAEKLILRIRIM 3873
EKISPWLLRIELNREMMVDKKL+M DIA KIN EFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 ALEKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
Query: 3874 NDEAPKGEMQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKSGKVNRFDEAEGFKP 4053
NDEAPKGE+QDESAEDDVFLKKIESNMLTEM LRGIPDINKVFIK+ KV +FDE +GFKP
Sbjct: 1261 NDEAPKGEIQDESAEDDVFLKKIESNMLTEMTLRGIPDINKVFIKNTKVQKFDENQGFKP 1320
Query: 4054 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 4233
EWMLDTEGVNLLAVM HEDVDA RTTSNHLIEVIEVLGIEAVRR+LLDELRVVISFDG
Sbjct: 1321 NEEWMLDTEGVNLLAVMCHEDVDATRTTSNHLIEVIEVLGIEAVRRALLDELRVVISFDG 1380
Query: 4234 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 4413
SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD+
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDY 1440
Query: 4414 LRGVTENIMLGQLAPIGTGDCALYLNDQMLQQAIELHLPSYMDGGGLDFGVTPSRSPITG 4593
LRGVTENIMLGQLAPIGTG+CALYLND+ML+ AIEL LPSYMD GLDFG+TP+RSPI+G
Sbjct: 1441 LRGVTENIMLGQLAPIGTGECALYLNDEMLKNAIELQLPSYMD--GLDFGMTPARSPISG 1498
Query: 4594 TPYHDGMMSPNYALSPNIRSSPFNSDAVFSPYVGGMAF 4707
TPYH+G+MSP+Y LSPN+R SP SDA FSPYVGGMAF
Sbjct: 1499 TPYHEGLMSPSYLLSPNLRLSP-TSDAQFSPYVGGMAF 1535
Score = 82.4 bits (202), Expect = 1e-12
Identities = 36/47 (76%), Positives = 40/47 (85%)
Frame = +1
Query: 5512 GASPDYSPSTPQYSPSAGYSPTAPGYSPSSTSQYTPQLSTKDEGSKR 5652
G SPDYSPS+PQ+SPS GYSP+ PGYSPSSTSQYTPQ S KD+G R
Sbjct: 1781 GVSPDYSPSSPQFSPSTGYSPSQPGYSPSSTSQYTPQTSDKDDGGTR 1827