BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00001777
         (1367 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002269323.1| PREDICTED: tubby-like F-box protein 3-like [...   587   e-165
ref|NP_850481.1| Tubby-like F-box protein 3 [Arabidopsis thalian...   544   e-152
ref|NP_001189775.1| Tubby-like F-box protein 3 [Arabidopsis thal...   543   e-152
gb|ADL36841.1| TLP domain class transcription factor [Malus x do...   543   e-152
ref|XP_002882136.1| hypothetical protein ARALYDRAFT_322431 [Arab...   538   e-150

>ref|XP_002269323.1| PREDICTED: tubby-like F-box protein 3-like [Vitis vinifera]
          Length = 405

 Score =  587 bits (1512), Expect = e-165
 Identities = 291/385 (75%), Positives = 332/385 (86%), Gaps = 1/385 (0%)
 Frame = +1

Query: 214  MSFKSMIQDMKGEIGNISRKGFEVKLSYGLKSKSHNNNNNRLVQEDVFVPVEVLMMKQSC 393
            MSFKS+IQDM+GE G+ISRKGFEVK +YGL+S+SH     R+VQ+   V   V  ++QSC
Sbjct: 1    MSFKSIIQDMRGEFGSISRKGFEVKFNYGLRSRSH-----RVVQDSSMV---VDALRQSC 52

Query: 394  WANLPPELLREVLVRIEASESMWPPRKCVAACAGVCRSWREIMKEIVKVPELSGKLTFPI 573
            WAN+PPELLR+VL+RIEASES WPPRK V ACAGVCRSWREI KEIVK PELSGKLTFPI
Sbjct: 53   WANMPPELLRDVLMRIEASESTWPPRKNVVACAGVCRSWREITKEIVKTPELSGKLTFPI 112

Query: 574  SLKQPGPRDSIIQCFIKRNRAAQTYHLYLGLTQALTDNGKLLLAARKCRRTTCTDYIISL 753
            SLKQPGPR S++QC+IKRNR+ QTYHLYLGL QA TD+GK LLAARKCRR TCTDYIISL
Sbjct: 113  SLKQPGPRGSLLQCYIKRNRSNQTYHLYLGLNQASTDDGKFLLAARKCRRPTCTDYIISL 172

Query: 754  DTDDMSKGSMTYIGKLRSNFLGTKFVIYDSQPPHAGATVAKSRSSRLVGLKQVSPRVPAG 933
            + DD+SKGS TYIGKLRSNFLGTKF +YD+QPP+AGA ++KSRS+R +G +QVSPRVPAG
Sbjct: 173  NADDVSKGSTTYIGKLRSNFLGTKFTVYDAQPPNAGARISKSRSTRRLGSRQVSPRVPAG 232

Query: 934  NYPVAQITYELNVLGSRGPRRMQCTMNAIPASAIEAEGTAPTQTEFLPNNLDSLPSIPFF 1113
            NYPVA I+YELNVLGSRGPRRMQC M+AIPA+AIE  G APTQTEF+ +N+DS PS PFF
Sbjct: 233  NYPVAHISYELNVLGSRGPRRMQCVMDAIPANAIEPGGVAPTQTEFVLSNVDSFPSFPFF 292

Query: 1114 RSKSTRVENLPSGPVAGHKG-ALVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVAT 1290
            RSKS R E+L SGP++G K   LVLKNK+PRWHEQLQCWCLNF GRVTVASVKNFQLVA+
Sbjct: 293  RSKSNRTESLHSGPLSGPKDEMLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVAS 352

Query: 1291 PENGAQIGQEHEKVILQFGKIGKDL 1365
             ENG   GQEHE VILQFGK+GKD+
Sbjct: 353  AENGV-AGQEHENVILQFGKVGKDV 376


>ref|NP_850481.1| Tubby-like F-box protein 3 [Arabidopsis thaliana]
            gi|79324947|ref|NP_001031558.1| Tubby-like F-box protein
            3 [Arabidopsis thaliana]
            gi|75248467|sp|Q8VY21.1|TLP3_ARATH RecName:
            Full=Tubby-like F-box protein 3; Short=AtTLP3
            gi|18377640|gb|AAL66970.1| putative tubby protein
            [Arabidopsis thaliana] gi|20465543|gb|AAM20254.1|
            putative tubby protein [Arabidopsis thaliana]
            gi|27372514|gb|AAK98802.1| tubby-like protein 3
            [Arabidopsis thaliana] gi|330255813|gb|AEC10907.1|
            Tubby-like F-box protein 3 [Arabidopsis thaliana]
            gi|330255814|gb|AEC10908.1| Tubby-like F-box protein 3
            [Arabidopsis thaliana]
          Length = 406

 Score =  544 bits (1401), Expect = e-152
 Identities = 272/387 (70%), Positives = 320/387 (82%), Gaps = 3/387 (0%)
 Frame = +1

Query: 214  MSFKSMIQDMKGEIGNISRKGFEVKLSYGLKSKSHNNNNNRLVQEDVFVPVEVLMMKQSC 393
            MSFKS+IQDM+GE+G+ISRKGF+V+  YG       + + R+VQ D  VPV+    KQSC
Sbjct: 1    MSFKSLIQDMRGELGSISRKGFDVRFGYG------RSRSQRVVQ-DTSVPVDAF--KQSC 51

Query: 394  WANLPPELLREVLVRIEASESMWPPRKCVAACAGVCRSWREIMKEIVKVPELSGKLTFPI 573
            WA++PPELLR+VL+RIE SE  WP RK V +CAGVCR+WREI+KEIV+VPELS KLTFPI
Sbjct: 52   WASMPPELLRDVLMRIEQSEDTWPSRKNVVSCAGVCRNWREIVKEIVRVPELSSKLTFPI 111

Query: 574  SLKQPGPRDSIIQCFIKRNRAAQTYHLYLGLTQALT-DNGKLLLAARKCRRTTCTDYIIS 750
            SLKQPGPR S++QC+I RNR+ QTY+LYLGL QA + D+GK LLAA++ RR TCTDYIIS
Sbjct: 112  SLKQPGPRGSLVQCYIMRNRSNQTYYLYLGLNQAASNDDGKFLLAAKRFRRPTCTDYIIS 171

Query: 751  LDTDDMSKGSMTYIGKLRSNFLGTKFVIYDSQPPHAGATVAKSRSSRLVGLKQVSPRVPA 930
            L+ DD+S+GS TYIGKLRSNFLGTKF +YD+QP + G  V ++RSSRL+ LKQVSPR+P+
Sbjct: 172  LNCDDVSRGSNTYIGKLRSNFLGTKFTVYDAQPTNPGTQVTRTRSSRLLSLKQVSPRIPS 231

Query: 931  GNYPVAQITYELNVLGSRGPRRMQCTMNAIPASAIEAEGTAPTQTEFLPNNLDSLPSIPF 1110
            GNYPVA I+YELNVLGSRGPRRMQC M+AIPASA+E  GTAPTQTE + +NLDS PS  F
Sbjct: 232  GNYPVAHISYELNVLGSRGPRRMQCVMDAIPASAVEPGGTAPTQTELVHSNLDSFPSFSF 291

Query: 1111 FRSKSTRVENLPSGP--VAGHKGALVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLV 1284
            FRSKS R E+LPSGP   A  +G LVLKNK+PRWHEQLQCWCLNF GRVTVASVKNFQLV
Sbjct: 292  FRSKSIRAESLPSGPSSAAQKEGLLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLV 351

Query: 1285 ATPENGAQIGQEHEKVILQFGKIGKDL 1365
            A PENG   G EHE VILQFGK+GKD+
Sbjct: 352  AAPENG-PAGPEHENVILQFGKVGKDV 377


>ref|NP_001189775.1| Tubby-like F-box protein 3 [Arabidopsis thaliana]
            gi|3738302|gb|AAC63644.1| putative tubby protein
            [Arabidopsis thaliana] gi|20197552|gb|AAM15124.1|
            putative tubby protein [Arabidopsis thaliana]
            gi|227204449|dbj|BAH57076.1| AT2G47900 [Arabidopsis
            thaliana] gi|330255815|gb|AEC10909.1| Tubby-like F-box
            protein 3 [Arabidopsis thaliana]
          Length = 407

 Score =  543 bits (1399), Expect = e-152
 Identities = 272/388 (70%), Positives = 319/388 (82%), Gaps = 4/388 (1%)
 Frame = +1

Query: 214  MSFKSMIQDMKGEIGNISRKGFEVKLSYGLKSKSHNNNNNRLVQEDVFVPVEVLMMKQSC 393
            MSFKS+IQDM+GE+G+ISRKGF+V+  YG       + + R+VQ D  VPV+    KQSC
Sbjct: 1    MSFKSLIQDMRGELGSISRKGFDVRFGYG------RSRSQRVVQ-DTSVPVDAF--KQSC 51

Query: 394  WANLPPELLREVLVRIEASESMWPPRKCVAACAGVCRSWREIMKEIVKVPELSGKLTFPI 573
            WA++PPELLR+VL+RIE SE  WP RK V +CAGVCR+WREI+KEIV+VPELS KLTFPI
Sbjct: 52   WASMPPELLRDVLMRIEQSEDTWPSRKNVVSCAGVCRNWREIVKEIVRVPELSSKLTFPI 111

Query: 574  SLKQPGPRDSIIQCFIKRNRAAQTYHLYLGLTQALT--DNGKLLLAARKCRRTTCTDYII 747
            SLKQPGPR S++QC+I RNR+ QTY+LYLGL QA    D+GK LLAA++ RR TCTDYII
Sbjct: 112  SLKQPGPRGSLVQCYIMRNRSNQTYYLYLGLNQAAASNDDGKFLLAAKRFRRPTCTDYII 171

Query: 748  SLDTDDMSKGSMTYIGKLRSNFLGTKFVIYDSQPPHAGATVAKSRSSRLVGLKQVSPRVP 927
            SL+ DD+S+GS TYIGKLRSNFLGTKF +YD+QP + G  V ++RSSRL+ LKQVSPR+P
Sbjct: 172  SLNCDDVSRGSNTYIGKLRSNFLGTKFTVYDAQPTNPGTQVTRTRSSRLLSLKQVSPRIP 231

Query: 928  AGNYPVAQITYELNVLGSRGPRRMQCTMNAIPASAIEAEGTAPTQTEFLPNNLDSLPSIP 1107
            +GNYPVA I+YELNVLGSRGPRRMQC M+AIPASA+E  GTAPTQTE + +NLDS PS  
Sbjct: 232  SGNYPVAHISYELNVLGSRGPRRMQCVMDAIPASAVEPGGTAPTQTELVHSNLDSFPSFS 291

Query: 1108 FFRSKSTRVENLPSGP--VAGHKGALVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQL 1281
            FFRSKS R E+LPSGP   A  +G LVLKNK+PRWHEQLQCWCLNF GRVTVASVKNFQL
Sbjct: 292  FFRSKSIRAESLPSGPSSAAQKEGLLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQL 351

Query: 1282 VATPENGAQIGQEHEKVILQFGKIGKDL 1365
            VA PENG   G EHE VILQFGK+GKD+
Sbjct: 352  VAAPENG-PAGPEHENVILQFGKVGKDV 378


>gb|ADL36841.1| TLP domain class transcription factor [Malus x domestica]
          Length = 401

 Score =  543 bits (1398), Expect = e-152
 Identities = 269/385 (69%), Positives = 324/385 (84%), Gaps = 1/385 (0%)
 Frame = +1

Query: 214  MSFKSMIQDMKGEIGNISRKGFEVKLSYGLKSKSHNNNNNRLVQEDVFVPVEVLMMKQSC 393
            MSFKSMIQDMKGE+G+ISRK F+VK  +G++S+S      R+VQ+  F    V  +KQSC
Sbjct: 1    MSFKSMIQDMKGELGSISRKSFDVK--FGMRSRSQ-----RVVQDTSF---RVDALKQSC 50

Query: 394  WANLPPELLREVLVRIEASESMWPPRKCVAACAGVCRSWREIMKEIVKVPELSGKLTFPI 573
            WAN+PPELLR+VL+RIEAS+  WPPRK V  CAGVCR+WREIMKEIVK PE+SGKLTFPI
Sbjct: 51   WANMPPELLRDVLMRIEASDDTWPPRKNVVCCAGVCRNWREIMKEIVKSPEVSGKLTFPI 110

Query: 574  SLKQPGPRDSIIQCFIKRNRAAQTYHLYLGLTQALTDNGKLLLAARKCRRTTCTDYIISL 753
            SLKQPGPR+S++QC+IKR+R+ QTY+L+LGL+QA TD+GK LLAA+KCRR TCTDYIISL
Sbjct: 111  SLKQPGPRNSLLQCYIKRSRSNQTYYLFLGLSQASTDDGKFLLAAKKCRRPTCTDYIISL 170

Query: 754  DTDDMSKGSMTYIGKLRSNFLGTKFVIYDSQPPHAGATVAKSRSSRLVGLKQVSPRVPAG 933
            + + +SKG+  ++GKLRSNFLGTKF IYD+QP ++GA V K RS+RLV   +VSPRVPAG
Sbjct: 171  NAEVVSKGNSAFVGKLRSNFLGTKFTIYDAQPTNSGAKVTKCRSTRLV--NKVSPRVPAG 228

Query: 934  NYPVAQITYELNVLGSRGPRRMQCTMNAIPASAIEAEGTAPTQTEFLPNNLDSLPSIPFF 1113
            NYPVA I YELNV+G+RGPRRMQC M++IPA A+E  G APTQTEF+ +N DS PS+PFF
Sbjct: 229  NYPVAHIAYELNVMGARGPRRMQCVMDSIPARAVEPGGVAPTQTEFMHSNTDSFPSVPFF 288

Query: 1114 RSKSTRVENLPSGPVAG-HKGALVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLVAT 1290
            RSKSTR EN PS   +G ++G LVL+NK+PRWHEQLQCWCLNF GRVTVASVKNFQLV++
Sbjct: 289  RSKSTRTENFPSPLESGENEGMLVLRNKAPRWHEQLQCWCLNFNGRVTVASVKNFQLVSS 348

Query: 1291 PENGAQIGQEHEKVILQFGKIGKDL 1365
            PENG   GQEHE VILQFGK+GKD+
Sbjct: 349  PENGV-AGQEHENVILQFGKVGKDV 372


>ref|XP_002882136.1| hypothetical protein ARALYDRAFT_322431 [Arabidopsis lyrata subsp.
            lyrata] gi|297327975|gb|EFH58395.1| hypothetical protein
            ARALYDRAFT_322431 [Arabidopsis lyrata subsp. lyrata]
          Length = 407

 Score =  538 bits (1386), Expect = e-150
 Identities = 269/388 (69%), Positives = 318/388 (81%), Gaps = 4/388 (1%)
 Frame = +1

Query: 214  MSFKSMIQDMKGEIGNISRKGFEVKLSYGLKSKSHNNNNNRLVQEDVFVPVEVLMMKQSC 393
            MSFKS+IQDM+GE+G+ISRKGF+V+  YG       + + R+VQ D  VPV+    KQSC
Sbjct: 1    MSFKSLIQDMRGELGSISRKGFDVRFGYG------RSRSQRVVQ-DTSVPVDAF--KQSC 51

Query: 394  WANLPPELLREVLVRIEASESMWPPRKCVAACAGVCRSWREIMKEIVKVPELSGKLTFPI 573
            WAN+PPELLR+VL+RIE SE  WP RK V +CAGVCR+WREI+KEIVKVPE+S KLTFPI
Sbjct: 52   WANMPPELLRDVLMRIELSEDTWPSRKNVVSCAGVCRNWREIVKEIVKVPEVSSKLTFPI 111

Query: 574  SLKQPGPRDSIIQCFIKRNRAAQTYHLYLGLTQALT--DNGKLLLAARKCRRTTCTDYII 747
            SLKQPGPR S++QC+I RNR+ QTY+LYLGL QA    D+GK LLAA++ RR TCTDYII
Sbjct: 112  SLKQPGPRGSLVQCYIMRNRSNQTYYLYLGLNQAAASNDDGKFLLAAKRFRRPTCTDYII 171

Query: 748  SLDTDDMSKGSMTYIGKLRSNFLGTKFVIYDSQPPHAGATVAKSRSSRLVGLKQVSPRVP 927
            SL+ DD+S+GS TYIGKLRSNFLGTKF ++D+QP + G  V ++RSSRL+ LKQVSPR+P
Sbjct: 172  SLNCDDVSRGSNTYIGKLRSNFLGTKFTVFDAQPTNPGTQVTRTRSSRLLSLKQVSPRIP 231

Query: 928  AGNYPVAQITYELNVLGSRGPRRMQCTMNAIPASAIEAEGTAPTQTEFLPNNLDSLPSIP 1107
            +GNYPVA I+YELNVLGSRGPRRMQC M+AIPASA+E  GTAPTQTE + +NL++ PS  
Sbjct: 232  SGNYPVAHISYELNVLGSRGPRRMQCVMDAIPASAVEPGGTAPTQTELIHSNLENFPSFS 291

Query: 1108 FFRSKSTRVENLPSGP--VAGHKGALVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQL 1281
            FFRSKS R E+L SGP   A  +G LVLKNK+PRWHEQLQCWCLNF GRVTVASVKNFQL
Sbjct: 292  FFRSKSIRAESLSSGPASAAQKEGLLVLKNKAPRWHEQLQCWCLNFNGRVTVASVKNFQL 351

Query: 1282 VATPENGAQIGQEHEKVILQFGKIGKDL 1365
            VA PENG   G EHE VILQFGK+GKD+
Sbjct: 352  VAAPENG-PAGPEHENVILQFGKVGKDV 378