BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00001740
         (2056 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001151251.1| F-box domain containing protein [Zea mays] g...    64   2e-07
gb|ACF86443.1| unknown [Zea mays] gi|414866391|tpg|DAA44948.1| T...    62   8e-07
ref|NP_001149539.1| F-box domain containing protein [Zea mays] g...    60   2e-06

>ref|NP_001151251.1| F-box domain containing protein [Zea mays]
            gi|195645330|gb|ACG42133.1| F-box domain containing
            protein [Zea mays]
          Length = 408

 Score = 63.9 bits (154), Expect = 2e-07
 Identities = 78/328 (23%), Positives = 142/328 (43%), Gaps = 23/328 (7%)
 Frame = -1

Query: 1135 VSLNFTDEVTKKVGRKSFKFDLNLTCRQKVRLPLLHGSYSGFLLFKSFDSVLYLWNPITQ 956
            + L+  D V + V   S  FD  +   ++ RL L HGS  G LL  S D+ LYL NP T+
Sbjct: 88   LDLHANDNVLQTVLGFSSHFDWWMPHDRERRLAL-HGSCDGVLLL-STDNSLYLCNPTTR 145

Query: 955  EQVSVIAPRSTYHVCGFFFHPTAMEYRVLFVSK-KNKLFEFVILSLKTKSSRLIT---TF 788
                +        + GF++H  + +YRVL+  + ++  + + ++   T+  RL++   + 
Sbjct: 146  HWGGLPPLHRNNTIAGFYWHRISDDYRVLYFRRHEDGKYCYYVMEADTRKQRLVSRQESL 205

Query: 787  THP--PSG---QRTPTIVNGALH*MVCDSSYKKVYGSYPSCKNSIVSFNICSEELCTMPH 623
             H   P+G   +  P +++G LH           +    S   SI  FN  +EE   MP 
Sbjct: 206  IHSSWPAGCARRSPPVLLHGNLH-----------WAPVSSRPESIAVFNTVAEEFWLMPS 254

Query: 622  PGGQCGLRKEHNLMKLMEKD------SHXXXXXXXXCGKIVIWILEDYEEKVWVRMHVVT 461
            P          N+  L+ +       S           ++ +W LEDY++ VW   + + 
Sbjct: 255  PAVYVNSLLISNVKLLIMEGVLALSCSCGETVGDHGPSRVDLWFLEDYKDHVWACKYRIE 314

Query: 460  LGRPYMFCGVQRFCETHVRVEGLHIYEDELLLKVRYKDLFLHNTEVGGM--------MRR 305
            L    + C   RF +    +   H  E ++L+ + +  L +++ E   +        +  
Sbjct: 315  LPVEDI-CRFIRFLDVRNAIVVSH--EGDVLVDL-WNRLLVYDREGNSVANLPLNCSLLE 370

Query: 304  VGKNGIRSSLSVVAVPHINTLVSLHTNN 221
            +G + ++ SL    VPH +  ++ H+ N
Sbjct: 371  IGPHMLKRSL----VPHASLGMNNHSPN 394


>gb|ACF86443.1| unknown [Zea mays] gi|414866391|tpg|DAA44948.1| TPA: F-box domain
            containing protein [Zea mays]
          Length = 408

 Score = 61.6 bits (148), Expect = 8e-07
 Identities = 69/294 (23%), Positives = 127/294 (43%), Gaps = 23/294 (7%)
 Frame = -1

Query: 1033 LHGSYSGFLLFKSFDSVLYLWNPITQEQVSVIAPRSTYHVCGFFFHPTAMEYRVLFVSK- 857
            LHGS  G LL  S D+ LYL NP T+    +        + GF++H  + +YRVL+  + 
Sbjct: 121  LHGSCDGVLLL-STDNSLYLCNPTTRHWGGLPPLHRNNTIAGFYWHRISDDYRVLYFRRH 179

Query: 856  KNKLFEFVILSLKTKSSRLIT---TFTHP--PSG---QRTPTIVNGALH*MVCDSSYKKV 701
            ++  + + ++   T+  RL++   +  H   P+G   +  P +++G LH           
Sbjct: 180  EDGKYCYYVMEADTRKQRLVSRQESLIHSSWPAGCARRSPPVLLHGNLH----------- 228

Query: 700  YGSYPSCKNSIVSFNICSEELCTMPHPGGQCGLRKEHNLMKLMEKD------SHXXXXXX 539
            +    S   SI  FN  +EE   MP P          N+  L+ +       S       
Sbjct: 229  WAPVSSRPESIAVFNTVAEEFWLMPSPAVYVNSLLISNVKLLIMEGVLALSCSCGETVGD 288

Query: 538  XXCGKIVIWILEDYEEKVWVRMHVVTLGRPYMFCGVQRFCETHVRVEGLHIYEDELLLKV 359
                ++ +W LEDY++ VW   + + L    + C   RF +    +   H  E ++L+ +
Sbjct: 289  HGPSRVDLWFLEDYKDHVWACKYRIELPVEDI-CRFIRFLDVRNAIVVSH--EGDVLVDL 345

Query: 358  RYKDLFLHNTEVGGM--------MRRVGKNGIRSSLSVVAVPHINTLVSLHTNN 221
             +  L +++ E   +        +  +G + ++ SL    VPH +  ++ H+ N
Sbjct: 346  -WNRLLVYDREGNSVANLPLNCSLLEIGPHMLKRSL----VPHASLGMNNHSPN 394


>ref|NP_001149539.1| F-box domain containing protein [Zea mays]
            gi|195627882|gb|ACG35771.1| F-box domain containing
            protein [Zea mays] gi|414866390|tpg|DAA44947.1| TPA:
            F-box domain containing protein [Zea mays]
          Length = 401

 Score = 60.5 bits (145), Expect = 2e-06
 Identities = 56/208 (26%), Positives = 94/208 (45%), Gaps = 16/208 (7%)
 Frame = -1

Query: 1033 LHGSYSGFLLFKSFDSVLYLWNPITQEQVSVIAPRSTYHVCGFFFHPTAMEYRVLFVSK- 857
            LHGS  G LL  S DS LYL+NP T+    +    S   + GF++H  + +YRVL+  + 
Sbjct: 123  LHGSCDGVLLLSSDDS-LYLYNPTTRHWGCLPPLHSDNTIAGFYWHRISDDYRVLYFRRH 181

Query: 856  KNKLFEFVILSLKTKSSRLIT---TFTH----PPSGQRT-PTIVNGALH*MVCDSSYKKV 701
            ++  + + ++   TK  RL++   +  H        +RT P +++G LH           
Sbjct: 182  EDGKYCYYVMEAGTKRQRLVSRQVSLIHSSWPTKCARRTPPVLLHGNLH----------- 230

Query: 700  YGSYPSCKNSIVSFNICSEELCTMPHPGGQCGLRKEHNLMKLMEKD-------SHXXXXX 542
            +    S   +I  F+  +E L  M  P        + N +KL++ D       S      
Sbjct: 231  WPPVSSRPETIAVFDTVAEVLRFMLSPAVYVNSLFDSN-VKLLDMDGVLAMSGSCREAIG 289

Query: 541  XXXCGKIVIWILEDYEEKVWVRMHVVTL 458
                 ++ +W LEDY ++VWV  + + L
Sbjct: 290  DDGPSRVDLWFLEDYNDRVWVCKYRIEL 317