BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00001731
         (3447 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002279485.2| PREDICTED: RNA polymerase-associated protein...  1508   0.0  
ref|XP_003546500.1| PREDICTED: RNA polymerase-associated protein...  1425   0.0  
ref|XP_003533781.1| PREDICTED: RNA polymerase-associated protein...  1424   0.0  
ref|XP_004144025.1| PREDICTED: RNA polymerase-associated protein...  1409   0.0  
ref|XP_002326116.1| PAF1 complex component [Populus trichocarpa]...  1392   0.0  

>ref|XP_002279485.2| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Vitis
            vinifera] gi|297738576|emb|CBI27821.3| unnamed protein
            product [Vitis vinifera]
          Length = 1091

 Score = 1508 bits (3904), Expect = 0.0
 Identities = 771/1072 (71%), Positives = 883/1072 (82%), Gaps = 5/1072 (0%)
 Frame = +2

Query: 5    DANDILDILKAEQASLDLWLIIAREYFKQGYVEQFQQILEEGSSPEIDEYYADVKYDRIA 184
            DA+DILDILKAEQA LDLWLIIAREYFKQG ++QF+QILEEGSSPEIDEYYADV+Y+RIA
Sbjct: 25   DASDILDILKAEQAPLDLWLIIAREYFKQGKIDQFRQILEEGSSPEIDEYYADVRYERIA 84

Query: 185  ILNALGAYHSYLGKCESKGAKKDDHFISATKYYNKASRIDIHEPSTWVGKGQLLLAKGDL 364
            ILNALGAY+SYLGK E+K  +K++HFI AT+YYNKASRID+HE STWVGKGQLLLAKGD+
Sbjct: 85   ILNALGAYYSYLGKIETKQREKEEHFILATQYYNKASRIDMHEASTWVGKGQLLLAKGDV 144

Query: 365  EQASGAFKIVLDGNKDNVPALLGQACVQFSRGRYSDSLELYKRALKVYPSCPGAVRLGIG 544
            EQA  AFKIVLDG++DNVPALLGQACV+F+RGRYSDSL+LYKRAL+VYP CP AVR+GIG
Sbjct: 145  EQAFAAFKIVLDGDRDNVPALLGQACVEFNRGRYSDSLDLYKRALQVYPDCPAAVRVGIG 204

Query: 545  LCRYKLGQFDKARQAFQRVLQLDPDNVEALVALGLMDLQTNEGDEIQKGMEKMQAAFEIY 724
            LC YKLGQF+KAR+AFQRVLQLDP+NVEALVALG+MDL TN+   I+KGMEKMQ AFEIY
Sbjct: 205  LCCYKLGQFEKARKAFQRVLQLDPENVEALVALGIMDLHTNDASGIRKGMEKMQRAFEIY 264

Query: 725  PYCAVALIYLANHFFFTGRHHAVERLTDTALAVSEPGLQKSHSFYNLARSYHSKGDYEKA 904
            PYCA+AL YLANHFFFTG+H  VE+LT+TALAV+  G  KSHS+YNLARSYHSKGDYEKA
Sbjct: 265  PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYEKA 324

Query: 905  GFYYMASVKEISRPHDFVLPYYGLGQVQLKLGDFRGSLSNFEKVLEVYPENGESLRVVGH 1084
            G YYMASVKE ++PHDFVLPYYGLGQVQLKLGDFR SLSNFEKVLEVYPEN E+L+ +GH
Sbjct: 325  GLYYMASVKESNKPHDFVLPYYGLGQVQLKLGDFRSSLSNFEKVLEVYPENCEALKALGH 384

Query: 1085 IYVQLGQTEKALDVLRKATRIDPRDAQAFLELGELLISSDAGAALDAFKTARSLLKKSGG 1264
            IYVQLGQTEKA + LRKAT+IDPRDAQAFL+LGELLI+SD GAALDAFKTAR LLKK G 
Sbjct: 385  IYVQLGQTEKAQEYLRKATKIDPRDAQAFLDLGELLITSDTGAALDAFKTARGLLKKGGE 444

Query: 1265 KAPIELLNNIGVLHFDKGDFELAKQTFKEALGNGVWLDLVDGKFCSSAVDS----DQFCD 1432
            + PIELLNNIGVL+F++G+FELA+QTFKEA+G+G+WL  +D K  S A D+      F D
Sbjct: 445  EVPIELLNNIGVLYFERGEFELAEQTFKEAVGDGIWLSFIDDKAYSYANDARTSMHHFKD 504

Query: 1433 MQLFQRLQERGDPVELQWDKVTTLFNYARLLEQLHDAEKASILYRLILFKYPDYQDAYLR 1612
            MQLF +L+E G  VEL W+KVT LFN ARLLEQL++ + ASILYRLILFK+PDY DAYLR
Sbjct: 505  MQLFHQLEEDGHFVELPWNKVTVLFNLARLLEQLNNTKTASILYRLILFKFPDYIDAYLR 564

Query: 1613 LAAIAKSRNNIQLSIELIGEAIKVNEKCPDALSMLGALELKNDDWLKAKETFRAAREATD 1792
            LAAIAK+RNNIQLSIEL+G+A+KVN+K P++L MLG LELKNDDW+KAKETFR+A +ATD
Sbjct: 565  LAAIAKARNNIQLSIELVGDALKVNDKGPNSLCMLGDLELKNDDWVKAKETFRSASDATD 624

Query: 1793 GKDSYSALSLGNWNYFAAARSEKKGAKLEATHLEKAKELYTKVLVQHPANLYAANGAAVV 1972
            GKDSY+ LSLGNWNYFAA RSEK+  KLEATHLEKAKELYT+VLVQH ANLYAANGA VV
Sbjct: 625  GKDSYATLSLGNWNYFAAIRSEKRAPKLEATHLEKAKELYTRVLVQHNANLYAANGAGVV 684

Query: 1973 LAEKGQFDVSKEIFTQVQEAASGSIFVQMPDVWINLAHVYFAQGQFTSAIKMYQNCLRKF 2152
            LAEKG FDVSK+IFTQVQEAASGS+FVQMPDVWINLAHVYFAQG F  A+KMYQNCLRKF
Sbjct: 685  LAEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLRKF 744

Query: 2153 YYNTDTQVLLYLARTHYEAEQWQDCKKTLLRAIHLAPSNYTLRFDAGVALQKFSASTLQK 2332
            YYNTD+QVLLYLARTHYEAEQWQDCKKTLLRAIHLAPSNYTLRFDAGVA+QKFSASTLQK
Sbjct: 745  YYNTDSQVLLYLARTHYEAEQWQDCKKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQK 804

Query: 2333 TKKTADEVRSTVAELKNAVRVFSQLSAASNHHIHGFDEKKIETHVGYCKHLLDAAKVHCX 2512
            TK+TADEVRSTVAELKNAVR+FSQLSAASN H HGFDEKKIETHVGYCKHLL+AAKVHC 
Sbjct: 805  TKRTADEVRSTVAELKNAVRIFSQLSAASNLHFHGFDEKKIETHVGYCKHLLEAAKVHCE 864

Query: 2513 XXXXXXXXXXXXXXVARQVXXXXXXXXXXXXXXKYQLEKRKQEDEIXXXXXXXXXXXXXX 2692
                          +ARQV              K+QLE+RKQEDE+              
Sbjct: 865  AAEREELQNRHRVELARQVNLAEEARRKAEEQRKFQLERRKQEDELKRVMQQEQHFERVK 924

Query: 2693 XXXXSSTPASKRKDRSHADDEEGGHSENXXXXXXXXXXXXXXPQYEMDEVEPNTMYEXXX 2872
                S+   SKRK+RS  DD+EGG SE                +Y+ +E   + M +   
Sbjct: 925  EQWKSNNLNSKRKERSQIDDDEGGQSER-RRRKGGKRRKKDKSRYDSEEARADAM-DDQD 982

Query: 2873 XXXXXXTNLVNNHEKDRDQMNRQENDGEENTQDLLATAGLEDSDVEDDMNDPPSTKYRRK 3052
                  TN+  NH +  +QMN Q++DGE++ QDLLA AGLEDSD EDDM   PS+  RRK
Sbjct: 983  EMEDEDTNM--NHRESTNQMNNQDDDGEDDAQDLLAAAGLEDSDAEDDMAG-PSSGNRRK 1039

Query: 3053 RALSDSDEDEPSDRKVESGQNRESLAE-PESDGEFREEKEELHRDTYEEDED 3205
            RA S+SDEDEP D++ ES   RE+ AE  ESDGE +++ ++ + D  E+DED
Sbjct: 1040 RAWSESDEDEPQDQRPESSPVRENSAEVQESDGEIKDDNDKPNGDAAEDDED 1091


>ref|XP_003546500.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine
            max]
          Length = 1088

 Score = 1425 bits (3690), Expect = 0.0
 Identities = 733/1071 (68%), Positives = 856/1071 (79%), Gaps = 5/1071 (0%)
 Frame = +2

Query: 5    DANDILDILKAEQASLDLWLIIAREYFKQGYVEQFQQILEEGSSPEIDEYYADVKYDRIA 184
            DA+DILDILKAEQA LDLWLIIAREYFKQG ++Q++QILEEGSSPEIDEYYADV+Y+RIA
Sbjct: 25   DASDILDILKAEQAPLDLWLIIAREYFKQGKIDQYRQILEEGSSPEIDEYYADVRYERIA 84

Query: 185  ILNALGAYHSYLGKCESKGAKKDDHFISATKYYNKASRIDIHEPSTWVGKGQLLLAKGDL 364
            ILNALGAY+SYLGK E+K  +K++HFI AT+YYNKASRID+HEPSTWVGKGQLLLAKG++
Sbjct: 85   ILNALGAYYSYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV 144

Query: 365  EQASGAFKIVLDGNKDNVPALLGQACVQFSRGRYSDSLELYKRALKVYPSCPGAVRLGIG 544
            EQAS AFKIVLDG+ DNVPALLGQACV+F+RGR+SDSLELYKR L+VYP+CP AVRLGIG
Sbjct: 145  EQASAAFKIVLDGDHDNVPALLGQACVEFNRGRFSDSLELYKRVLQVYPNCPAAVRLGIG 204

Query: 545  LCRYKLGQFDKARQAFQRVLQLDPDNVEALVALGLMDLQTNEGDEIQKGMEKMQAAFEIY 724
            LCRYKLGQF+KA+QAF+RVLQLDP+NVE+L+AL +MDL+TNE   I+ GM KMQ AFEIY
Sbjct: 205  LCRYKLGQFEKAQQAFERVLQLDPENVESLIALAIMDLRTNEATGIRTGMVKMQRAFEIY 264

Query: 725  PYCAVALIYLANHFFFTGRHHAVERLTDTALAVSEPGLQKSHSFYNLARSYHSKGDYEKA 904
            PYCA+AL YLANHFFFTG+H  VE+LT+TALAV+  G  KSHS+YNLARSYHSKGDY+KA
Sbjct: 265  PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYDKA 324

Query: 905  GFYYMASVKEISRPHDFVLPYYGLGQVQLKLGDFRGSLSNFEKVLEVYPENGESLRVVGH 1084
            G YYMASVKE+++PH+FV PYYGLGQVQ+KLGDF+ +LSNFEKVLEVYP+N E+L+ +GH
Sbjct: 325  GVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKSALSNFEKVLEVYPDNCETLKALGH 384

Query: 1085 IYVQLGQTEKALDVLRKATRIDPRDAQAFLELGELLISSDAGAALDAFKTARSLLKKSGG 1264
            IYVQLGQT+K  D +RKAT+IDPRDAQAFLELGELLI SD GAALDAFKTA +L KK G 
Sbjct: 385  IYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELLILSDTGAALDAFKTAHTLFKKGGQ 444

Query: 1265 KAPIELLNNIGVLHFDKGDFELAKQTFKEALGNGVWLDLVDGKFCSS---AVDSDQFCDM 1435
            + PIELLNNIGVL F++G+FELA+QTFKEALG+GVWL  ++ +  SS   A  + QF DM
Sbjct: 445  EVPIELLNNIGVLQFERGEFELARQTFKEALGDGVWLSFINEENKSSIDAATSTLQFKDM 504

Query: 1436 QLFQRLQERGDPVELQWDKVTTLFNYARLLEQLHDAEKASILYRLILFKYPDYQDAYLRL 1615
            QLF  L+  G  VE+ WDKVT LFN ARLLEQL+D+  ASI YRLILFKYPDY DAYLRL
Sbjct: 505  QLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLYDSGTASIFYRLILFKYPDYIDAYLRL 564

Query: 1616 AAIAKSRNNIQLSIELIGEAIKVNEKCPDALSMLGALELKNDDWLKAKETFRAAREATDG 1795
            AAIAK+RNNI LSIEL+ +A+KVN KCP+ALSMLG LELKNDDW+KAKET R A +ATDG
Sbjct: 565  AAIAKARNNILLSIELVNDALKVNNKCPNALSMLGELELKNDDWVKAKETLRTASDATDG 624

Query: 1796 KDSYSALSLGNWNYFAAARSEKKGAKLEATHLEKAKELYTKVLVQHPANLYAANGAAVVL 1975
            KDSY+ LSLGNWNYFAA R+EK+  KLEATHLEKAKEL T+VL+QH +NLYAANGAAVVL
Sbjct: 625  KDSYATLSLGNWNYFAAVRNEKRNPKLEATHLEKAKELCTRVLIQHSSNLYAANGAAVVL 684

Query: 1976 AEKGQFDVSKEIFTQVQEAASGSIFVQMPDVWINLAHVYFAQGQFTSAIKMYQNCLRKFY 2155
            AEKG FDVSK+IFTQVQEAASGS+FVQMPDVWINLAHVYFAQG FT A+KMYQNCLRKFY
Sbjct: 685  AEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFTLAVKMYQNCLRKFY 744

Query: 2156 YNTDTQVLLYLARTHYEAEQWQDCKKTLLRAIHLAPSNYTLRFDAGVALQKFSASTLQKT 2335
            +NTD+Q+LLYLARTHYEAEQWQDC KTLLRAIHLAPSNYTLRFDAGVA+QKFSASTLQK 
Sbjct: 745  HNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKA 804

Query: 2336 KKTADEVRSTVAELKNAVRVFSQLSAASNHHIHGFDEKKIETHVGYCKHLLDAAKVHCXX 2515
            K+TADEVR+TVAEL+NAVRVFSQLSAASN HIHGFDEKKI+THVGYC HLL AAKVH   
Sbjct: 805  KRTADEVRATVAELQNAVRVFSQLSAASNLHIHGFDEKKIDTHVGYCNHLLSAAKVHLEA 864

Query: 2516 XXXXXXXXXXXXXVARQVXXXXXXXXXXXXXXKYQLEKRKQEDEIXXXXXXXXXXXXXXX 2695
                         +ARQV              K+Q+E+RKQEDE+               
Sbjct: 865  AEHEEQQVRQRQELARQVALAEEARRKAEEQRKFQMERRKQEDELKRVQKQEEHFRRVKE 924

Query: 2696 XXXSSTPASKRKDRSHADDEEGGHSENXXXXXXXXXXXXXXP--QYEMDEVEPNTMYEXX 2869
               SS+  SKR++RS  DDEEGG  E                  +Y+ +E E + M E  
Sbjct: 925  QWKSSS-HSKRRERS--DDEEGGTGEKKRKKGGKRRKKDKHSKLRYDAEEPEDDLMDEQG 981

Query: 2870 XXXXXXXTNLVNNHEKDRDQMNRQENDGEENTQDLLATAGLEDSDVEDDMNDPPSTKYRR 3049
                      +N  E+ + QMN   +D EEN Q LLA AGLEDSD +++   P S+  RR
Sbjct: 982  MEDEEAD---INYREEPQTQMN---DDAEENAQGLLAAAGLEDSDADEETAAPSSSIARR 1035

Query: 3050 KRALSDSDEDEPSDRKVESGQNRESLAEPESDGEFREEKEELHRDTYEEDE 3202
            ++ALS+SD+DEP  ++  S   + S     SDGE R+  +    D  +E++
Sbjct: 1036 RQALSESDDDEPLLQRQSSPVRQNSADMQLSDGEIRDGDKTNGDDGNDEEK 1086


>ref|XP_003533781.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Glycine
            max]
          Length = 1086

 Score = 1424 bits (3685), Expect = 0.0
 Identities = 734/1072 (68%), Positives = 857/1072 (79%), Gaps = 6/1072 (0%)
 Frame = +2

Query: 5    DANDILDILKAEQASLDLWLIIAREYFKQGYVEQFQQILEEGSSPEIDEYYADVKYDRIA 184
            DA+DILDILKAEQA LDLWL+IAREYFKQG ++QF+QILEEGSSPEID+YYADV+Y+RIA
Sbjct: 25   DASDILDILKAEQAPLDLWLVIAREYFKQGKIDQFRQILEEGSSPEIDDYYADVRYERIA 84

Query: 185  ILNALGAYHSYLGKCESKGAKKDDHFISATKYYNKASRIDIHEPSTWVGKGQLLLAKGDL 364
            ILNALGAY+SYLGK E+K  +K++HFI AT+YYNKASRID+HEPSTWVGKGQLLLAKG++
Sbjct: 85   ILNALGAYYSYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLAKGEV 144

Query: 365  EQASGAFKIVLDGNKDNVPALLGQACVQFSRGRYSDSLELYKRALKVYPSCPGAVRLGIG 544
            EQAS AFKIVLDG++DNVPALLGQACV+F+RGRYSDSLELYKRAL VYP CP AVRLGIG
Sbjct: 145  EQASAAFKIVLDGDRDNVPALLGQACVEFNRGRYSDSLELYKRALLVYPDCPAAVRLGIG 204

Query: 545  LCRYKLGQFDKARQAFQRVLQLDPDNVEALVALGLMDLQTNEGDEIQKGMEKMQAAFEIY 724
            LCRYKLGQF+KA+QAF+R   LDP+NVEALVAL +MDL+TNE   I+ GM KMQ AFEIY
Sbjct: 205  LCRYKLGQFEKAQQAFER---LDPENVEALVALAIMDLRTNEATGIRTGMVKMQRAFEIY 261

Query: 725  PYCAVALIYLANHFFFTGRHHAVERLTDTALAVSEPGLQKSHSFYNLARSYHSKGDYEKA 904
            PYCA+AL YLANHFFFTG+H  VE+LT+TALAV+  G  KSHS+YNLARSYHSKGDY+KA
Sbjct: 262  PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYDKA 321

Query: 905  GFYYMASVKEISRPHDFVLPYYGLGQVQLKLGDFRGSLSNFEKVLEVYPENGESLRVVGH 1084
            G YYMASVKE+++PH+FV PYYGLGQVQ+KLGDF+ +LSNFEKVLEVYP+N E+L+ +GH
Sbjct: 322  GVYYMASVKEVNKPHEFVFPYYGLGQVQIKLGDFKSALSNFEKVLEVYPDNCETLKALGH 381

Query: 1085 IYVQLGQTEKALDVLRKATRIDPRDAQAFLELGELLISSDAGAALDAFKTARSLLKKSGG 1264
            IYVQLGQT+K  D +RKAT+IDPRDAQAFLELGELLI SD GAALDAFKTAR+L KK G 
Sbjct: 382  IYVQLGQTDKGQDFIRKATKIDPRDAQAFLELGELLILSDTGAALDAFKTARTLFKKGGQ 441

Query: 1265 KAPIELLNNIGVLHFDKGDFELAKQTFKEALGNGVWLDLVDGKFCSS---AVDSDQFCDM 1435
            + PIELLNNIGVL F++G+FELA+QTFKEALG+GVWL  ++ +  SS   A  + QF DM
Sbjct: 442  EVPIELLNNIGVLQFERGEFELAQQTFKEALGDGVWLSFINEEKKSSIDAATSTLQFKDM 501

Query: 1436 QLFQRLQERGDPVELQWDKVTTLFNYARLLEQLHDAEKASILYRLILFKYPDYQDAYLRL 1615
            +LF  L+  G  VE+ WDKVT LFN ARLLEQL+D+  ASILYRL+LFKYPDY DAYLRL
Sbjct: 502  KLFHDLESNGHHVEVPWDKVTVLFNLARLLEQLNDSGTASILYRLVLFKYPDYIDAYLRL 561

Query: 1616 AAIAKSRNNIQLSIELIGEAIKVNEKCPDALSMLGALELKNDDWLKAKETFRAAREATDG 1795
            AAIAK+RNNI LSIEL+ +A+KVN KCP+ALSMLG LELKNDDW+KAKET RAA +AT+G
Sbjct: 562  AAIAKARNNILLSIELVNDALKVNNKCPNALSMLGELELKNDDWVKAKETLRAASDATEG 621

Query: 1796 KDSYSALSLGNWNYFAAARSEKKGAKLEATHLEKAKELYTKVLVQHPANLYAANGAAVVL 1975
            KDSY++LSLGNWNYFAA R+EK+  KLEATHLEKAKELYT+VL+QH +NLYAANGAAVVL
Sbjct: 622  KDSYASLSLGNWNYFAAVRNEKRNPKLEATHLEKAKELYTRVLIQHSSNLYAANGAAVVL 681

Query: 1976 AEKGQFDVSKEIFTQVQEAASGSIFVQMPDVWINLAHVYFAQGQFTSAIKMYQNCLRKFY 2155
            AEKG FDVSK+IFTQVQEAASGS+FVQMPDVWINLAHVYFAQG FT A+KMYQNCLRKFY
Sbjct: 682  AEKGHFDVSKDIFTQVQEAASGSVFVQMPDVWINLAHVYFAQGNFTLAVKMYQNCLRKFY 741

Query: 2156 YNTDTQVLLYLARTHYEAEQWQDCKKTLLRAIHLAPSNYTLRFDAGVALQKFSASTLQKT 2335
            +NTD+Q+LLYLARTHYEAEQWQDC KTLLRAIHLAPSNYTLRFDAGVA+QKFSASTLQK 
Sbjct: 742  HNTDSQILLYLARTHYEAEQWQDCIKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQKA 801

Query: 2336 KKTADEVRSTVAELKNAVRVFSQLSAASNHHIHGFDEKKIETHVGYCKHLLDAAKVHCXX 2515
            K+TADEVR+TVAEL+NAVRVFSQLSAASN HIHGFDEKKI+THVGYC HLL AAKVH   
Sbjct: 802  KRTADEVRATVAELQNAVRVFSQLSAASNLHIHGFDEKKIDTHVGYCNHLLSAAKVHLEA 861

Query: 2516 XXXXXXXXXXXXXVARQVXXXXXXXXXXXXXXKYQLEKRKQEDEIXXXXXXXXXXXXXXX 2695
                         +ARQV              K+Q+E+RKQEDE+               
Sbjct: 862  AEREEQQVRQRQELARQVAFAEEARRKAEEQRKFQMERRKQEDELKRVQQQEEHFRRVKE 921

Query: 2696 XXXSSTPASKRKDRSHADDEEG---GHSENXXXXXXXXXXXXXXPQYEMDEVEPNTMYEX 2866
               SS+  SKR++RS  DDEEG   G  +                +Y+ +E E + M E 
Sbjct: 922  QWKSSS-HSKRRERS--DDEEGGGTGEKKRKKGGKRRKKDKHSKSRYDTEEPENDMMDEQ 978

Query: 2867 XXXXXXXXTNLVNNHEKDRDQMNRQENDGEENTQDLLATAGLEDSDVEDDMNDPPSTKYR 3046
                       +N  E+ + QMN   +D EEN Q LLA AGLEDSD +++   P S+  R
Sbjct: 979  EMEDEEAD---INYREEPQTQMN---DDAEENAQGLLAAAGLEDSDADEEAPAPSSSIAR 1032

Query: 3047 RKRALSDSDEDEPSDRKVESGQNRESLAEPESDGEFREEKEELHRDTYEEDE 3202
            R++ALS+SD+DEP  ++  S     S     SDGE R+  +    D  EE++
Sbjct: 1033 RRQALSESDDDEPLIQRQSSPARENSADMQLSDGEIRDGDKTNGDDGSEEEK 1084


>ref|XP_004144025.1| PREDICTED: RNA polymerase-associated protein CTR9 homolog [Cucumis
            sativus]
          Length = 1074

 Score = 1409 bits (3646), Expect = 0.0
 Identities = 725/1060 (68%), Positives = 843/1060 (79%), Gaps = 9/1060 (0%)
 Frame = +2

Query: 5    DANDILDILKAEQASLDLWLIIAREYFKQGYVEQFQQILEEGSSPEIDEYYADVKYDRIA 184
            DA+DILDILKAEQA LDLWLIIAREYFKQG +EQF+QILEEGSSPEIDEYYADV+Y+RIA
Sbjct: 25   DASDILDILKAEQAPLDLWLIIAREYFKQGKLEQFRQILEEGSSPEIDEYYADVRYERIA 84

Query: 185  ILNALGAYHSYLGKCESKGAKKDDHFISATKYYNKASRIDIHEPSTWVGKGQLLLAKGDL 364
            ILNALGAY+SYLGK E+K  +K++HFI AT+YYNKASRID+HEPSTWVGKGQLLL KG++
Sbjct: 85   ILNALGAYYSYLGKIETKQREKEEHFILATQYYNKASRIDMHEPSTWVGKGQLLLTKGEV 144

Query: 365  EQASGAFKIVLDGNKDNVPALLGQACVQFSRGRYSDSLELYKRALKVYPSCPGAVRLGIG 544
            EQA  AFKIVLDG++DNVPALLGQACV+F+RG YS+SLELYKRAL+VYP CP AVRLGIG
Sbjct: 145  EQAFAAFKIVLDGDRDNVPALLGQACVEFNRGHYSESLELYKRALQVYPDCPAAVRLGIG 204

Query: 545  LCRYKLGQFDKARQAFQRVLQLDPDNVEALVALGLMDLQTNEGDEIQKGMEKMQAAFEIY 724
            LCRY+L Q+ KA+QAF+R   LDP+NVEALV L ++DL TNE   I+ GMEKMQ AFEIY
Sbjct: 205  LCRYQLKQYGKAQQAFER---LDPENVEALVGLAIIDLNTNEAGRIRNGMEKMQRAFEIY 261

Query: 725  PYCAVALIYLANHFFFTGRHHAVERLTDTALAVSEPGLQKSHSFYNLARSYHSKGDYEKA 904
            P+CA+AL YLANHFFFTG+H  VE+LT+TALA++  G  KSHSFYNLARSYHSKGDYEKA
Sbjct: 262  PFCAMALNYLANHFFFTGQHFLVEQLTETALAITNHGPTKSHSFYNLARSYHSKGDYEKA 321

Query: 905  GFYYMASVKEISRPHDFVLPYYGLGQVQLKLGDFRGSLSNFEKVLEVYPENGESLRVVGH 1084
            G YYMAS KE ++P +FV PYYGLGQVQLK+GD R +LSNFEKVLEVYP+N E+L+V+GH
Sbjct: 322  GLYYMASAKEANKPREFVFPYYGLGQVQLKMGDLRSALSNFEKVLEVYPDNCETLKVLGH 381

Query: 1085 IYVQLGQTEKALDVLRKATRIDPRDAQAFLELGELLISSDAGAALDAFKTARSLLKKSGG 1264
            IYVQLGQ EKA + LRKAT+IDPRDAQAFL+LGELLIS+D  AALDAFKTA  LLKK G 
Sbjct: 382  IYVQLGQAEKAQESLRKATKIDPRDAQAFLDLGELLISTDESAALDAFKTASILLKKGGQ 441

Query: 1265 KAPIELLNNIGVLHFDKGDFELAKQTFKEALGNGVWLDLVDGKFCSSAVDSD----QFCD 1432
            + PIE+LNN+GVLHF++ +FELA++ FKEALG+G+WLD +DGK    A+++     Q+ D
Sbjct: 442  EVPIEVLNNLGVLHFEREEFELAERIFKEALGDGIWLDFIDGKVRCPAIEASASVLQYKD 501

Query: 1433 MQLFQRLQERGDPVELQWDKVTTLFNYARLLEQLHDAEKASILYRLILFKYPDYQDAYLR 1612
            ++LF +L+  G  + L W KVT+LFN ARLLEQLH  E +S+LYRLILFKYPDY DAYLR
Sbjct: 502  VELFYQLEREGRAIVLPWKKVTSLFNLARLLEQLHRIEVSSVLYRLILFKYPDYVDAYLR 561

Query: 1613 LAAIAKSRNNIQLSIELIGEAIKVNEKCPDALSMLGALELKNDDWLKAKETFRAAREATD 1792
            LA+IAK+RN +QLSIEL+ +A+KVN+KC +ALSMLG LELKNDDW++AKETFRAA EATD
Sbjct: 562  LASIAKARNYVQLSIELVNDALKVNDKCSNALSMLGELELKNDDWVRAKETFRAAGEATD 621

Query: 1793 GKDSYSALSLGNWNYFAAARSEKKGAKLEATHLEKAKELYTKVLVQHPANLYAANGAAVV 1972
            GKDSY+ LSLGNWNYFAA R+EK+  KLEATHLEK+KELYT+VLVQHPANLYAANGA V+
Sbjct: 622  GKDSYATLSLGNWNYFAALRNEKRNPKLEATHLEKSKELYTRVLVQHPANLYAANGAGVI 681

Query: 1973 LAEKGQFDVSKEIFTQVQEAASGSIFVQMPDVWINLAHVYFAQGQFTSAIKMYQNCLRKF 2152
            LAEKGQFDVSK+IFTQVQEAASG+IFVQMPDVWINLAHVYFAQG F+ A+KMYQNCLRKF
Sbjct: 682  LAEKGQFDVSKDIFTQVQEAASGNIFVQMPDVWINLAHVYFAQGNFSLAVKMYQNCLRKF 741

Query: 2153 YYNTDTQVLLYLARTHYEAEQWQDCKKTLLRAIHLAPSNYTLRFDAGVALQKFSASTLQK 2332
            YYNTD Q+LLYLART+YEAEQWQDCKKTLLRAIHLAPSNYTLRFDAGVA+QKFSASTLQK
Sbjct: 742  YYNTDYQILLYLARTYYEAEQWQDCKKTLLRAIHLAPSNYTLRFDAGVAMQKFSASTLQK 801

Query: 2333 TKKTADEVRSTVAELKNAVRVFSQLSAASNHHIHGFDEKKIETHVGYCKHLLDAAKVHCX 2512
            TK+TADEVRSTVAEL+NAVRVFSQLSAASN H HGFDEKKI+THVGYCKHLL+AA VH  
Sbjct: 802  TKRTADEVRSTVAELENAVRVFSQLSAASNLHFHGFDEKKIDTHVGYCKHLLEAAGVHLK 861

Query: 2513 XXXXXXXXXXXXXXVARQVXXXXXXXXXXXXXXKYQLEKRKQEDEIXXXXXXXXXXXXXX 2692
                          +ARQV              K+QLE+RK EDE               
Sbjct: 862  AAEHEEQQIRQRQELARQVALAEDARRKADEQRKFQLERRKLEDEEKRMMQQEQHFKRVK 921

Query: 2693 XXXXSSTPASKRKDRSHADDEEGGHSE--NXXXXXXXXXXXXXXPQYEMDEVEPNTMYEX 2866
                S TPA KR++RS  DD+E G+SE                   YE +E + + M + 
Sbjct: 922  EQWKSITPA-KRRERSEIDDDEAGNSEKRRRKGGKRRKKDRKGKSHYETEEADNDMMDDQ 980

Query: 2867 XXXXXXXXTNLVNN--HEKDRDQMNRQENDGEENTQDLLATAGLEDSDVEDDMNDPPSTK 3040
                     N  NN  + + R Q+N Q +D E N QD LA AGLEDSD ED+   P S  
Sbjct: 981  ELY------NEDNNISYRESRSQVNDQGDDFEGNDQDALAEAGLEDSDAEDEAGAPSSNA 1034

Query: 3041 YRRKRALSDSDEDEPSDRKVESGQNRESLAEPE-SDGEFR 3157
             RR+   SDS+EDEP D + ES   RE+ A  E SDGE R
Sbjct: 1035 ARRRATWSDSEEDEPIDTQRESRLQRENSAGLEDSDGEIR 1074


>ref|XP_002326116.1| PAF1 complex component [Populus trichocarpa]
            gi|222833309|gb|EEE71786.1| PAF1 complex component
            [Populus trichocarpa]
          Length = 1056

 Score = 1392 bits (3603), Expect = 0.0
 Identities = 717/1040 (68%), Positives = 833/1040 (80%), Gaps = 6/1040 (0%)
 Frame = +2

Query: 5    DANDILDILKAEQASLDLWLIIAREYFKQGYVEQFQQILEEGSSPEIDEYYADVKYDRIA 184
            DA+DILDILKAEQA LDLWLIIAREYFKQG ++QF+QILEEGSS EIDEYYADV+Y+RIA
Sbjct: 25   DASDILDILKAEQAPLDLWLIIAREYFKQGKLDQFRQILEEGSSHEIDEYYADVRYERIA 84

Query: 185  ILNALGAYHSYLGKCESKGAKKDDHFISATKYYNKASRIDIHEPSTWVGKGQLLLAKGDL 364
            ILNALGAY+SYLGK E+K  +K+++FI ATK+YNKASRID+HEPSTWVGKGQLLLAKG++
Sbjct: 85   ILNALGAYYSYLGKVETKQREKEEYFIQATKHYNKASRIDMHEPSTWVGKGQLLLAKGEV 144

Query: 365  EQASGAFKIVLDGNKDNVPALLGQACVQFSRGRYSDSLELYKRALKVYPSCPGAVRLGIG 544
            EQAS AF+IVL+G++DNV ALLGQACV++SRG Y +SL L+KRAL+VYP CPGAVRLGIG
Sbjct: 145  EQASAAFRIVLEGDRDNVSALLGQACVEYSRGHYGESLTLFKRALQVYPDCPGAVRLGIG 204

Query: 545  LCRYKLGQFDKARQAFQRVLQLDPDNVEALVALGLMDLQTNEGDEIQKGMEKMQAAFEIY 724
             C YKLG   KA  AFQR   LDP+NVEALV+L ++DLQTNE   I+KGMEKMQ AFEIY
Sbjct: 205  HCHYKLGHVGKACLAFQR---LDPENVEALVSLAILDLQTNEAAAIRKGMEKMQRAFEIY 261

Query: 725  PYCAVALIYLANHFFFTGRHHAVERLTDTALAVSEPGLQKSHSFYNLARSYHSKGDYEKA 904
            PYCA+AL YLANHFFFTG+H  VE+LT+TALAV+  G  KSHS+YNLARSYHSKGDYE A
Sbjct: 262  PYCAMALNYLANHFFFTGQHFLVEQLTETALAVTNHGPTKSHSYYNLARSYHSKGDYETA 321

Query: 905  GFYYMASVKEISRPHDFVLPYYGLGQVQLKLGDFRGSLSNFEKVLEVYPENGESLRVVGH 1084
              YY ASVKEI++P +FV PYYGLGQVQLKLG+ + +LSNFEKVLEVYP+N E+L+V+GH
Sbjct: 322  SRYYWASVKEINKPSEFVFPYYGLGQVQLKLGEIKNALSNFEKVLEVYPDNCETLKVLGH 381

Query: 1085 IYVQLGQTEKALDVLRKATRIDPRDAQAFLELGELLISSDAGAALDAFKTARSLLKKSGG 1264
            IYVQLGQTEKA + LRKA +IDPRDAQAFL+LGELLIS+D GAALDAFKTARSLLKK G 
Sbjct: 382  IYVQLGQTEKAQEFLRKAAKIDPRDAQAFLDLGELLISTDTGAALDAFKTARSLLKKGGE 441

Query: 1265 KAPIELLNNIGVLHFDKGDFELAKQTFKEALGNGVWLDLVDGKFCSSAVDSD----QFCD 1432
            + PIE+LNNI V+HF++ + ELA Q FKEALG+G+WL  ++GK  +  VD+     Q+ D
Sbjct: 442  EVPIEVLNNIAVIHFEREELELALQNFKEALGDGIWLTFLEGKANTYEVDATSSLLQYKD 501

Query: 1433 MQLFQRLQERGDPVELQWDKVTTLFNYARLLEQLHDAEKASILYRLILFKYPDYQDAYLR 1612
            MQ+F+RL+E G  VEL W+KVTTLFN ARLLEQLH+ E AS LYRLILFKYPDY DAYLR
Sbjct: 502  MQIFRRLEEEGHSVELSWNKVTTLFNLARLLEQLHNTETASTLYRLILFKYPDYVDAYLR 561

Query: 1613 LAAIAKSRNNIQLSIELIGEAIKVNEKCPDALSMLGALELKNDDWLKAKETFRAAREATD 1792
            LAAIAK+RNN+ LSIEL+ EA+ VN+KCP+ALSMLG LELKNDDW+KAKETFRAA EATD
Sbjct: 562  LAAIAKARNNLPLSIELVNEALTVNDKCPNALSMLGDLELKNDDWVKAKETFRAASEATD 621

Query: 1793 GKDSYSALSLGNWNYFAAARSEKKGAKLEATHLEKAKELYTKVLVQHPANLYAANGAAVV 1972
            GKDSY+ LSLGNWNYFAA R+EK+  KLEATHLEKAKELYT+VLVQH ANLYAANGA VV
Sbjct: 622  GKDSYATLSLGNWNYFAAIRNEKRNPKLEATHLEKAKELYTRVLVQHTANLYAANGAGVV 681

Query: 1973 LAEKGQFDVSKEIFTQVQEAASGSIFVQMPDVWINLAHVYFAQGQFTSAIKMYQNCLRKF 2152
            LAEKG FDVSK++FTQVQEAASGSIFVQMPDVWINLAHVYFAQG F  A+KMYQNCL+KF
Sbjct: 682  LAEKGHFDVSKDLFTQVQEAASGSIFVQMPDVWINLAHVYFAQGNFALAVKMYQNCLQKF 741

Query: 2153 YYNTDTQVLLYLARTHYEAEQWQDCKKTLLRAIHLAPSNYTLRFDAGVALQKFSASTLQK 2332
            +YNTD+Q+LLYLARTHYEAEQWQDCK+TLLRAIHL PSNYTLRFDAGVA+QKFSASTLQK
Sbjct: 742  FYNTDSQILLYLARTHYEAEQWQDCKRTLLRAIHLTPSNYTLRFDAGVAMQKFSASTLQK 801

Query: 2333 TKKTADEVRSTVAELKNAVRVFSQLSAASNHHIHGFDEKKIETHVGYCKHLLDAAKVHCX 2512
            TK+T DEVRSTV EL+NAVR+FSQLSAASN + +GFDEKKI THV YCKHLL+AA VH  
Sbjct: 802  TKRTVDEVRSTVDELENAVRLFSQLSAASNLYFNGFDEKKINTHVEYCKHLLEAAIVHRE 861

Query: 2513 XXXXXXXXXXXXXXVARQVXXXXXXXXXXXXXXKYQLEKRKQEDEIXXXXXXXXXXXXXX 2692
                          +ARQ+              K+QLE+RKQEDE+              
Sbjct: 862  AAEREEQQNRQRLDLARQMALAEEARRKAEEQRKFQLERRKQEDELKRVRQQEEHFERVK 921

Query: 2693 XXXXSSTPASKRKDRSHADDEEGGHSE--NXXXXXXXXXXXXXXPQYEMDEVEPNTMYEX 2866
                SST ASKR+DR+  DD EGGH E                  +YEM+E +   M + 
Sbjct: 922  EQWKSSTSASKRRDRADIDDGEGGHGEKRRRKGGKRRKKEKSSRSRYEMEEAD---MMDD 978

Query: 2867 XXXXXXXXTNLVNNHEKDRDQMNRQENDGEENTQDLLATAGLEDSDVEDDMNDPPSTKYR 3046
                     N+  N  +   QMN Q+++ EEN QD+LA AGLEDSD +DD    PS+  R
Sbjct: 979  HDEPEDDDANV--NFREPGYQMNDQDDNAEENAQDVLAAAGLEDSDADDDA-AAPSSAGR 1035

Query: 3047 RKRALSDSDEDEPSDRKVES 3106
            RKRA S+SDEDE S+RK +S
Sbjct: 1036 RKRAWSESDEDEISERKPQS 1055