BLASTX nr result
ID: Coptis23_contig00001694
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00001694
(3882 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003588326.1| ATP synthase subunit alpha [Medicago truncat... 281 7e-94
ref|XP_003588337.1| Ribosomal protein S10 [Medicago truncatula] ... 257 2e-65
ref|YP_588403.1| hypothetical protein ZeamMp158 [Zea mays subsp.... 149 4e-33
ref|ZP_06097399.1| conserved hypothetical protein [Brucella sp. ... 127 3e-28
ref|ZP_05934035.1| conserved hypothetical protein [Brucella ceti... 127 3e-28
>ref|XP_003588326.1| ATP synthase subunit alpha [Medicago truncatula]
gi|355477374|gb|AES58577.1| ATP synthase subunit alpha
[Medicago truncatula]
Length = 1116
Score = 281 bits (720), Expect(2) = 7e-94
Identities = 134/136 (98%), Positives = 135/136 (99%)
Frame = -3
Query: 565 YRGCWHGVSRGFFLESCHDRALDERALQAALPFFTHAILLDRAFAHCPRFPTAAPRGSPG 386
YRGCWHGVSRGFFLESCHDRALDERALQAALPFFTHAILLDRAFAHCPRFPTAAPRGSPG
Sbjct: 935 YRGCWHGVSRGFFLESCHDRALDERALQAALPFFTHAILLDRAFAHCPRFPTAAPRGSPG 994
Query: 385 RVSVPVWLIIRKDQLSIIGLVSLYLTNYLILRRLIKQRFLAFFRIWPELFGRFPRVTHPF 206
RVSVPVWLIIRKDQLSIIGLVSLYLTNYLILRRLIKQRFLAFFRIWPELFGRFPR+THPF
Sbjct: 995 RVSVPVWLIIRKDQLSIIGLVSLYLTNYLILRRLIKQRFLAFFRIWPELFGRFPRITHPF 1054
Query: 205 ATLF*TVPTSWARQAT 158
ATLF TVPTSWARQAT
Sbjct: 1055 ATLFSTVPTSWARQAT 1070
Score = 92.4 bits (228), Expect(2) = 7e-94
Identities = 43/44 (97%), Positives = 43/44 (97%)
Frame = -2
Query: 152 LGASFPSAQLP*NNVRLACVKHIASVPSEPGSNSSFEYDWALQW 21
LGASFPSAQLP NNVRLACVKHIASVPSEPGSNSSFEYDWALQW
Sbjct: 1073 LGASFPSAQLPENNVRLACVKHIASVPSEPGSNSSFEYDWALQW 1116
Score = 164 bits (414), Expect(3) = 2e-58
Identities = 81/97 (83%), Positives = 82/97 (84%)
Frame = -3
Query: 1042 QVLLFICQGLVRFCALYRIKPHAPPLVQAPVNSFEFRSCDRTPQAECFTR*LGP*SA*TK 863
QV LFICQGLVRFCALYRIKPHAPPLVQAPVNSFEFRSCDRTP+ TK
Sbjct: 845 QVFLFICQGLVRFCALYRIKPHAPPLVQAPVNSFEFRSCDRTPE--------------TK 890
Query: 862 GEHSSFTAWTTRVSNPVRSPCFRTPASVGTQRAAFAF 752
GEHSSFTAWTTRVSNPVRSPCFRTPASVGTQRAAFAF
Sbjct: 891 GEHSSFTAWTTRVSNPVRSPCFRTPASVGTQRAAFAF 927
Score = 56.6 bits (135), Expect(3) = 2e-58
Identities = 27/27 (100%), Positives = 27/27 (100%)
Frame = -2
Query: 1178 FLLRRMSQQHKTRVSLVIGLDQTSHDT 1098
FLLRRMSQQHKTRVSLVIGLDQTSHDT
Sbjct: 817 FLLRRMSQQHKTRVSLVIGLDQTSHDT 843
Score = 56.2 bits (134), Expect(3) = 2e-58
Identities = 30/45 (66%), Positives = 30/45 (66%), Gaps = 2/45 (4%)
Frame = -1
Query: 1305 TLESAS--KGAGSLLTDSTATCWHXXXXXXXXXXXXAHFGCKDLL 1177
TLESAS KGAGSLLTDSTATCWH AHFGCKD L
Sbjct: 774 TLESASNSKGAGSLLTDSTATCWHSISSAGASLGSSAHFGCKDFL 818
Score = 89.7 bits (221), Expect(2) = 3e-18
Identities = 40/47 (85%), Positives = 42/47 (89%)
Frame = -1
Query: 1746 VRHAPFCFFVSEPFWRGVLLPLRTTPPGGSPECRVFLRRQLDVVVTC 1606
+RHAPFC F S FWRGVL PLRTTPPGGSPECRVFLRRQLDVV+TC
Sbjct: 698 LRHAPFCLFRSRLFWRGVLNPLRTTPPGGSPECRVFLRRQLDVVLTC 744
Score = 31.2 bits (69), Expect(2) = 3e-18
Identities = 14/24 (58%), Positives = 16/24 (66%)
Frame = -2
Query: 1931 FMFPSCREQSELRQSFRIRSALQP 1860
F F + +RQSFRIRSALQP
Sbjct: 674 FAFSKSKVSKSMRQSFRIRSALQP 697
>ref|XP_003588337.1| Ribosomal protein S10 [Medicago truncatula]
gi|355477385|gb|AES58588.1| Ribosomal protein S10
[Medicago truncatula]
Length = 1152
Score = 257 bits (657), Expect = 2e-65
Identities = 125/148 (84%), Positives = 129/148 (87%)
Frame = +1
Query: 1612 DDDVELAAEEDSAFRRATRWCGT*W**YAPPKRLRNKKTKRCVPHSRGTASDILEEGGDD 1791
DDDVELAAE+DS YAPPK+ K+TKRC+PHSRGTASDILEEGGDD
Sbjct: 376 DDDVELAAEKDS---------------YAPPKQTAPKQTKRCMPHSRGTASDILEEGGDD 420
Query: 1792 VKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAV 1971
VKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAV
Sbjct: 421 VKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIADQHAAV 480
Query: 1972 NMYPGPVHTARHTLGIGFARSIGPMITH 2055
NMYPGPVHTARHTLGIGFARSI PMITH
Sbjct: 481 NMYPGPVHTARHTLGIGFARSIRPMITH 508
Score = 156 bits (395), Expect(2) = 3e-50
Identities = 84/118 (71%), Positives = 86/118 (72%)
Frame = +3
Query: 120 GELGRRKRGS*LKVACLAQEVGTV*NKVANGCVTRGNLPNSSGQILKKAKKRCXXXXXXX 299
G K +KVACLAQEVGTV NKVANGCV RGNLPNSSGQILKKAKK
Sbjct: 106 GSWAEGKEAPSVKVACLAQEVGTVENKVANGCVMRGNLPNSSGQILKKAKK--------- 156
Query: 300 XXXXXXXXTKPMMLSWSFRMISHTGTETRPGLPRGAAVGNLGQWAKARSSNIA*VKKG 473
TKPMMLSWSFRMISHTGTETRPGLPRGAAVGNLGQWAKARSSNI + G
Sbjct: 157 -------LTKPMMLSWSFRMISHTGTETRPGLPRGAAVGNLGQWAKARSSNICAIMTG 207
Score = 71.6 bits (174), Expect(2) = 3e-50
Identities = 34/34 (100%), Positives = 34/34 (100%)
Frame = +2
Query: 503 CAIMTGLEEEAPANSVPAAAVRRGGQVFFGMTGR 604
CAIMTGLEEEAPANSVPAAAVRRGGQVFFGMTGR
Sbjct: 202 CAIMTGLEEEAPANSVPAAAVRRGGQVFFGMTGR 235
Score = 204 bits (520), Expect = 1e-49
Identities = 109/146 (74%), Positives = 110/146 (75%)
Frame = +3
Query: 744 GTPKAKAALWVPTDAGVRKHGERTGLDTLVVHAVNDECSPLVYADQGPS*RVKHSAWGVR 923
GTPKAKAALWVPTDAGVRKH ERTGLDTLVVHAVNDECSPLVY DQGP
Sbjct: 240 GTPKAKAALWVPTDAGVRKHRERTGLDTLVVHAVNDECSPLVYVDQGP------------ 287
Query: 924 SQDRNSKELTGACTSGGACGLIRYNAQNLTSP*HMNNKTCP*RDGTYFHTGAAWLSSARV 1103
+RNSKELTGACTSGGACGLIRYNAQNLTS AAWLSSARV
Sbjct: 288 --NRNSKELTGACTSGGACGLIRYNAQNLTS--------------------AAWLSSARV 325
Query: 1104 VRCLVKSYNERNPRFVLLRHAPKEKV 1181
VRCLVKSYNERNPRFVLLRHAPKEKV
Sbjct: 326 VRCLVKSYNERNPRFVLLRHAPKEKV 351
Score = 105 bits (263), Expect = 7e-20
Identities = 49/50 (98%), Positives = 49/50 (98%)
Frame = +1
Query: 4 RFTRFYHCRAQSYSKEEFDPGSEGTLAICLTHASRTLF*GSWAEGKEAPS 153
RFTRFYHCRAQSYSKEEFDPGSEGTLAICLTHASRTLF GSWAEGKEAPS
Sbjct: 67 RFTRFYHCRAQSYSKEEFDPGSEGTLAICLTHASRTLFSGSWAEGKEAPS 116
Score = 98.6 bits (244), Expect = 1e-17
Identities = 44/45 (97%), Positives = 45/45 (100%)
Frame = +2
Query: 2357 PSCSSIGNQDKPGTTVRRENTRSHSDLDMWNRLAPYVLRLFGRHG 2491
PSCSSIGNQDKPGTTVRRENTRSHSDLDMWNRLAPYVL+LFGRHG
Sbjct: 559 PSCSSIGNQDKPGTTVRRENTRSHSDLDMWNRLAPYVLKLFGRHG 603
>ref|YP_588403.1| hypothetical protein ZeamMp158 [Zea mays subsp. mays]
gi|40795104|gb|AAR91148.1| hypothetical protein
(mitochondrion) [Zea mays]
Length = 111
Score = 149 bits (377), Expect = 4e-33
Identities = 67/71 (94%), Positives = 69/71 (97%)
Frame = +1
Query: 1720 KKTKRCVPHSRGTASDILEEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLS 1899
K+ KRCVPHSRGTAS+ILEEGGDDVKSAWPLWAGPHTCYNGN NGKQGCKAERIRKDCLS
Sbjct: 41 KQRKRCVPHSRGTASEILEEGGDDVKSAWPLWAGPHTCYNGNDNGKQGCKAERIRKDCLS 100
Query: 1900 SDCSLQLGNMK 1932
SDCSLQLGNMK
Sbjct: 101 SDCSLQLGNMK 111
>ref|ZP_06097399.1| conserved hypothetical protein [Brucella sp. 83/13]
gi|264663256|gb|EEZ33517.1| conserved hypothetical
protein [Brucella sp. 83/13]
Length = 122
Score = 127 bits (318), Expect(2) = 3e-28
Identities = 61/86 (70%), Positives = 70/86 (81%)
Frame = +1
Query: 1774 EEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIA 1953
EEGGDDVKS+WPL AG HTCYNG +G++ + E I K LSSDC+LQL MKLESLVIA
Sbjct: 13 EEGGDDVKSSWPLRAGLHTCYNGGDSGQRARECELISKSHLSSDCTLQLECMKLESLVIA 72
Query: 1954 DQHAAVNMYPGPVHTARHTLGIGFAR 2031
DQHAAVN +PG VHTARHT+G+GF R
Sbjct: 73 DQHAAVNTFPGLVHTARHTMGVGFTR 98
Score = 27.7 bits (60), Expect(2) = 3e-28
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +3
Query: 2112 HGGVFDWGEVVTR 2150
HG V DWGEVVTR
Sbjct: 110 HGRVSDWGEVVTR 122
>ref|ZP_05934035.1| conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261316118|ref|ZP_05955315.1| conserved hypothetical
protein [Brucella pinnipedialis M163/99/10]
gi|261322643|ref|ZP_05961840.1| conserved hypothetical
protein [Brucella ceti M644/93/1]
gi|261757300|ref|ZP_06001009.1| conserved hypothetical
protein [Brucella sp. F5/99] gi|260924843|gb|EEX91411.1|
conserved hypothetical protein [Brucella ceti M13/05/1]
gi|261295333|gb|EEX98829.1| conserved hypothetical
protein [Brucella ceti M644/93/1]
gi|261305144|gb|EEY08641.1| conserved hypothetical
protein [Brucella pinnipedialis M163/99/10]
gi|261737284|gb|EEY25280.1| conserved hypothetical
protein [Brucella sp. F5/99]
Length = 116
Score = 127 bits (318), Expect(2) = 3e-28
Identities = 61/86 (70%), Positives = 70/86 (81%)
Frame = +1
Query: 1774 EEGGDDVKSAWPLWAGPHTCYNGNYNGKQGCKAERIRKDCLSSDCSLQLGNMKLESLVIA 1953
EEGGDDVKS+WPL AG HTCYNG +G++ + E I K LSSDC+LQL MKLESLVIA
Sbjct: 7 EEGGDDVKSSWPLRAGLHTCYNGGDSGQRARECELISKSHLSSDCTLQLECMKLESLVIA 66
Query: 1954 DQHAAVNMYPGPVHTARHTLGIGFAR 2031
DQHAAVN +PG VHTARHT+G+GF R
Sbjct: 67 DQHAAVNTFPGLVHTARHTMGVGFTR 92
Score = 27.7 bits (60), Expect(2) = 3e-28
Identities = 11/13 (84%), Positives = 11/13 (84%)
Frame = +3
Query: 2112 HGGVFDWGEVVTR 2150
HG V DWGEVVTR
Sbjct: 104 HGRVSDWGEVVTR 116