BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00001559
         (202 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAH59405.1| light harvesting protein 1 [Plantago major]           142   3e-32
pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting ...   142   4e-32
gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisu...   142   4e-32
pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angst...   142   4e-32
gb|AAW31511.1| light-harvesting chlorophyll-a/b binding protein ...   142   4e-32

>emb|CAH59405.1| light harvesting protein 1 [Plantago major]
          Length = 229

 Score =  142 bits (358), Expect = 3e-32
 Identities = 64/65 (98%), Positives = 65/65 (100%)
 Frame = -3

Query: 197 SSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRW 18
           SSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETF+KNRELEVIHSRW
Sbjct: 9   SSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFAKNRELEVIHSRW 68

Query: 17  AMLGA 3
           AMLGA
Sbjct: 69  AMLGA 73


>pdb|1VCR|A Chain A, An Icosahedral Assembly Of Light-Harvesting Chlorophyll AB
           Protein Complex From Pea Thylakoid Membranes
          Length = 232

 Score =  142 bits (357), Expect = 4e-32
 Identities = 64/65 (98%), Positives = 64/65 (98%)
 Frame = -3

Query: 197 SSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRW 18
           S SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRW
Sbjct: 12  SGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRW 71

Query: 17  AMLGA 3
           AMLGA
Sbjct: 72  AMLGA 76


>gb|ABN49454.2| chloroplast chlorophyll a/b binding protein [Pisum sativum]
          Length = 266

 Score =  142 bits (357), Expect = 4e-32
 Identities = 64/65 (98%), Positives = 64/65 (98%)
 Frame = -3

Query: 197 SSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRW 18
           S SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRW
Sbjct: 46  SGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRW 105

Query: 17  AMLGA 3
           AMLGA
Sbjct: 106 AMLGA 110


>pdb|2BHW|A Chain A, Pea Light-Harvesting Complex Ii At 2.5 Angstrom Resolution
           gi|109157230|pdb|2BHW|B Chain B, Pea Light-Harvesting
           Complex Ii At 2.5 Angstrom Resolution
           gi|109157231|pdb|2BHW|C Chain C, Pea Light-Harvesting
           Complex Ii At 2.5 Angstrom Resolution
          Length = 232

 Score =  142 bits (357), Expect = 4e-32
 Identities = 64/65 (98%), Positives = 64/65 (98%)
 Frame = -3

Query: 197 SSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRW 18
           S SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRW
Sbjct: 12  SGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRW 71

Query: 17  AMLGA 3
           AMLGA
Sbjct: 72  AMLGA 76


>gb|AAW31511.1| light-harvesting chlorophyll-a/b binding protein Lhcb1 [Pisum
           sativum]
          Length = 266

 Score =  142 bits (357), Expect = 4e-32
 Identities = 64/65 (98%), Positives = 64/65 (98%)
 Frame = -3

Query: 197 SSSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRW 18
           S SPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRW
Sbjct: 46  SGSPWYGPDRVKYLGPFSGESPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRW 105

Query: 17  AMLGA 3
           AMLGA
Sbjct: 106 AMLGA 110