BLASTX nr result

ID: Coptis23_contig00001556 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00001556
         (1242 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276760.2| PREDICTED: probable ribosome biogenesis prot...   407   e-111
ref|XP_002528990.1| conserved hypothetical protein [Ricinus comm...   385   e-104
gb|AAZ67589.1| 80A08_4 [Brassica rapa subsp. pekinensis]              381   e-103
ref|NP_001049256.1| Os03g0195200 [Oryza sativa Japonica Group] g...   375   e-101
ref|XP_004163491.1| PREDICTED: ribosome biogenesis protein TSR3 ...   375   e-101

>ref|XP_002276760.2| PREDICTED: probable ribosome biogenesis protein C16orf42 homolog
            [Vitis vinifera]
          Length = 302

 Score =  407 bits (1045), Expect = e-111
 Identities = 215/306 (70%), Positives = 234/306 (76%), Gaps = 13/306 (4%)
 Frame = +1

Query: 133  MGHSKPRRQRGHNYHESSHHRGQSSKFREPSREDQNENGDSLPTAQDE---------ANE 285
            MGH+K RR +GH       HRGQSS+F+EP RE      DSLPT Q           A E
Sbjct: 1    MGHNKARRFKGHQ-----SHRGQSSRFQEPLREY-----DSLPTDQVAMGFNFCAVAAEE 50

Query: 286  EGPLVPNIQLAMWDFGQCDAKKCTGRKLSRFALLKE----LRVTSGFGGIVLSPVGTQCV 453
            E   VP +QLAMWDFGQCDAK+CTGRKLSRF LLKE    LRVTSGFGGI LSPVG QCV
Sbjct: 51   EELSVPKVQLAMWDFGQCDAKRCTGRKLSRFGLLKESIRLLRVTSGFGGIALSPVGNQCV 110

Query: 454  SKEDHLLMKRKGLAVVDCSWARLSDVPFVKLRCSAPRLLPWLVAANPVNYGRPCQLSCVE 633
            SKED++L+KRKGLAVVDCSWARLSDVPF KLRC+APRLLPWLVAANPVNYGRPC+LSCVE
Sbjct: 111  SKEDYILIKRKGLAVVDCSWARLSDVPFTKLRCAAPRLLPWLVAANPVNYGRPCELSCVE 170

Query: 634  ALSAALFLCGEEETANLLLGKFKWGHAFLSLNRELLKAYSECNNSTEIISVQNAWLSQNS 813
            ALSAALF+CGEEETANLLLGKFKWGHAFLSLNRELLKAYS+C N  EIISVQNAWLSQ  
Sbjct: 171  ALSAALFICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENGAEIISVQNAWLSQQR 230

Query: 814  RVPRSPSQKDESSEVPMRNETGSDYDSEDGLPPLEKNSNHSIFEQSDSDSEDELPPLEKN 993
               +     DE+      ++ GS  DSEDGLPPLEKN NH   E  +SDSED LPPLEKN
Sbjct: 231  LQVQKALPDDEAGVSSQNDDEGSCDDSEDGLPPLEKNLNHLNLE--ESDSEDGLPPLEKN 288

Query: 994  MNRLAL 1011
            +N L L
Sbjct: 289  LNHLNL 294


>ref|XP_002528990.1| conserved hypothetical protein [Ricinus communis]
           gi|223531580|gb|EEF33409.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 285

 Score =  385 bits (988), Expect = e-104
 Identities = 195/294 (66%), Positives = 224/294 (76%), Gaps = 5/294 (1%)
 Frame = +1

Query: 133 MGHSKPRRQRGHNYHESSHHRGQSSKFREPSREDQNENGDSLPTAQDEANEEGPLVPNIQ 312
           MGH+KPRR + H+      +RGQSS+     RED++   D +P       E+    P +Q
Sbjct: 1   MGHNKPRRSKSHH-----SNRGQSSRTNLLEREDESLPSDQVP------EEDTNSTPRVQ 49

Query: 313 LAMWDFGQCDAKKCTGRKLSRFALLKELRVTSGFGGIVLSPVGTQCVSKEDHLLMKRKGL 492
           LAMWDFGQCDAK+CTGRKL RF LLKELRV  GFGGIVLSPVG+QCVSK+DH L+KRKGL
Sbjct: 50  LAMWDFGQCDAKRCTGRKLGRFGLLKELRVNCGFGGIVLSPVGSQCVSKQDHSLIKRKGL 109

Query: 493 AVVDCSWARLSDVPFVKLRCSAPRLLPWLVAANPVNYGRPCQLSCVEALSAALFLCGEEE 672
           AVVDCSWARL+DVPFVKLRC+APRLLPWLVAANPVNYGRPC+LSCVEALSAAL +CGEEE
Sbjct: 110 AVVDCSWARLNDVPFVKLRCAAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEE 169

Query: 673 TANLLLGKFKWGHAFLSLNRELLKAYSECNNSTEIISVQNAWLSQNSRVPRSPSQKDESS 852
           TA+LLL KFKWGHAFLSLNRELLKAYSEC NS +IISVQN WLSQ S+VP++     +S 
Sbjct: 170 TADLLLNKFKWGHAFLSLNRELLKAYSECENSADIISVQNGWLSQQSKVPKA---VPDSE 226

Query: 853 EVPMRNETGSDYDSEDGLPPLEKNSNHSIFEQSDSDSEDE-----LPPLEKNMN 999
           E     + GS  DSEDGLPPLE+N NH  FE SD D         LP  +KN++
Sbjct: 227 EAETSKDEGSCSDSEDGLPPLERNMNHLNFEDSDEDRPAGLLAMLLPVFQKNLS 280


>gb|AAZ67589.1| 80A08_4 [Brassica rapa subsp. pekinensis]
          Length = 449

 Score =  381 bits (978), Expect = e-103
 Identities = 191/299 (63%), Positives = 229/299 (76%), Gaps = 6/299 (2%)
 Frame = +1

Query: 133  MGHSKPRRQRGHNYHESSHHRGQSSKFREPSREDQNENGDSLPTAQDEANEEGPLVPNIQ 312
            MG+ K RR RG N +      GQ+S+     RED+     SLP   D  +E+  +VPN+Q
Sbjct: 1    MGYGKHRRSRGGNSNP-----GQTSRTENIGREDE-----SLP--HDPGSEDEAVVPNVQ 48

Query: 313  LAMWDFGQCDAKKCTGRKLSRFALLKELRVTSGFGGIVLSPVGTQCVSKEDHLLMKRKGL 492
            LAMWDFGQCDAK+CTGRKL+RF LLKELRV +GFGG+VLSPVG QCVSKED+ L+K +GL
Sbjct: 49   LAMWDFGQCDAKRCTGRKLARFNLLKELRVNTGFGGVVLSPVGRQCVSKEDYALIKSRGL 108

Query: 493  AVVDCSWARLSDVPFVKLRCSAPRLLPWLVAANPVNYGRPCQLSCVEALSAALFLCGEEE 672
            AVVDCSWARL+DVPF KLRC+APRLLPWLVAANPVNYGRPC+LSCVEALSAAL LCGEEE
Sbjct: 109  AVVDCSWARLTDVPFAKLRCTAPRLLPWLVAANPVNYGRPCELSCVEALSAALILCGEEE 168

Query: 673  TANLLLGKFKWGHAFLSLNRELLKAYSECNNSTEIISVQNAWLSQNSRVPRSPSQKDESS 852
            TANLLLGKFKWGHAFLSLN+++LK YS+C NS EIISVQN+WL+Q +++ + P+   E  
Sbjct: 169  TANLLLGKFKWGHAFLSLNKDILKEYSKCENSAEIISVQNSWLTQQTQISKQPAPLKE-- 226

Query: 853  EVPMRNETGSDYDSEDGLPPLEKNSNHSIFEQSDSDSEDE------LPPLEKNMNRLAL 1011
             V    +   D D +DGLPPLE+N NH I E S+ + E+E      LPPLE+NMN + L
Sbjct: 227  HVRKEGDESEDDDEDDGLPPLERNMNHVISEDSEEEDEEEEEEDDGLPPLERNMNHVKL 285


>ref|NP_001049256.1| Os03g0195200 [Oryza sativa Japonica Group]
           gi|108706647|gb|ABF94442.1| Possible metal-binding
           domain in RNase L inhibitor, RLI family protein,
           expressed [Oryza sativa Japonica Group]
           gi|113547727|dbj|BAF11170.1| Os03g0195200 [Oryza sativa
           Japonica Group] gi|215697184|dbj|BAG91178.1| unnamed
           protein product [Oryza sativa Japonica Group]
           gi|218192253|gb|EEC74680.1| hypothetical protein
           OsI_10371 [Oryza sativa Indica Group]
           gi|222624365|gb|EEE58497.1| hypothetical protein
           OsJ_09762 [Oryza sativa Japonica Group]
          Length = 272

 Score =  375 bits (963), Expect = e-101
 Identities = 190/279 (68%), Positives = 216/279 (77%)
 Frame = +1

Query: 133 MGHSKPRRQRGHNYHESSHHRGQSSKFREPSREDQNENGDSLPTAQDEANEEGPLVPNIQ 312
           MG+++ RR RG +   SS    Q + + +         G SLP  +D   EE P  P IQ
Sbjct: 1   MGYNR-RRGRGSSSSSSSRRTKQEAAWDDGP-------GTSLPRQED--TEEEPKGPKIQ 50

Query: 313 LAMWDFGQCDAKKCTGRKLSRFALLKELRVTSGFGGIVLSPVGTQCVSKEDHLLMKRKGL 492
           LAMWDFGQCD K+CTGRKLSRF LLKELRVT+GFGG+VLSPVGTQCVSKED  +++RKGL
Sbjct: 51  LAMWDFGQCDVKRCTGRKLSRFGLLKELRVTNGFGGVVLSPVGTQCVSKEDRHIVQRKGL 110

Query: 493 AVVDCSWARLSDVPFVKLRCSAPRLLPWLVAANPVNYGRPCQLSCVEALSAALFLCGEEE 672
           AVVDCSWARLSDVPFVKLRC APRLLPWLVAANPVNYGRPC+LSCVEALSAAL +CGEEE
Sbjct: 111 AVVDCSWARLSDVPFVKLRCGAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEE 170

Query: 673 TANLLLGKFKWGHAFLSLNRELLKAYSECNNSTEIISVQNAWLSQNSRVPRSPSQKDESS 852
           TA+LLLGKFKWGH+FLS+NRELLKAYS+C N TEII+VQN+WLS NS VP+SP    E S
Sbjct: 171 TAHLLLGKFKWGHSFLSVNRELLKAYSQCENGTEIINVQNSWLSSNSNVPKSPVNAAEKS 230

Query: 853 EVPMRNETGSDYDSEDGLPPLEKNSNHSIFEQSDSDSED 969
                 E GSD DS+DGLPPLE+N NH  F Q D   E+
Sbjct: 231 H--QSTEEGSDADSDDGLPPLEENLNHLNFNQDDESEEE 267


>ref|XP_004163491.1| PREDICTED: ribosome biogenesis protein TSR3 homolog [Cucumis
           sativus]
          Length = 265

 Score =  375 bits (962), Expect = e-101
 Identities = 194/280 (69%), Positives = 219/280 (78%)
 Frame = +1

Query: 133 MGHSKPRRQRGHNYHESSHHRGQSSKFREPSREDQNENGDSLPTAQDEANEEGPLVPNIQ 312
           M H+K RR + H+       RGQS++  +   ED+      LP   D ANEE P  PNIQ
Sbjct: 1   MSHNKTRRFKNHH-----PRRGQSTRGHKFIGEDE-----CLPV--DPANEEEPTRPNIQ 48

Query: 313 LAMWDFGQCDAKKCTGRKLSRFALLKELRVTSGFGGIVLSPVGTQCVSKEDHLLMKRKGL 492
           LAMWDFGQCDAK+CTGRKL+RF LLKELRV SGFGGIVLSPVG  CVSKEDH L+K+KGL
Sbjct: 49  LAMWDFGQCDAKRCTGRKLARFGLLKELRVNSGFGGIVLSPVGVNCVSKEDHSLLKQKGL 108

Query: 493 AVVDCSWARLSDVPFVKLRCSAPRLLPWLVAANPVNYGRPCQLSCVEALSAALFLCGEEE 672
           AVVDCSWARL DVPFVKLRC+APRLLPWLVAANPVNYGRPC+LSCVEAL+AAL +CGE E
Sbjct: 109 AVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEGE 168

Query: 673 TANLLLGKFKWGHAFLSLNRELLKAYSECNNSTEIISVQNAWLSQNSRVPRSPSQKDESS 852
           TA+LLLGKFKWGHAFLS+NRELLK YS C NS +IISVQNAWLSQ  +VP+ P   ++ S
Sbjct: 169 TADLLLGKFKWGHAFLSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEPHNVEDKS 228

Query: 853 EVPMRNETGSDYDSEDGLPPLEKNSNHSIFEQSDSDSEDE 972
            V   +E GSD DSEDGLPPLEKN NH   +Q +SD E E
Sbjct: 229 SVSEHDE-GSD-DSEDGLPPLEKNLNHLTLQQ-ESDEESE 265


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