BLASTX nr result
ID: Coptis23_contig00001556
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis23_contig00001556 (1242 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002276760.2| PREDICTED: probable ribosome biogenesis prot... 407 e-111 ref|XP_002528990.1| conserved hypothetical protein [Ricinus comm... 385 e-104 gb|AAZ67589.1| 80A08_4 [Brassica rapa subsp. pekinensis] 381 e-103 ref|NP_001049256.1| Os03g0195200 [Oryza sativa Japonica Group] g... 375 e-101 ref|XP_004163491.1| PREDICTED: ribosome biogenesis protein TSR3 ... 375 e-101 >ref|XP_002276760.2| PREDICTED: probable ribosome biogenesis protein C16orf42 homolog [Vitis vinifera] Length = 302 Score = 407 bits (1045), Expect = e-111 Identities = 215/306 (70%), Positives = 234/306 (76%), Gaps = 13/306 (4%) Frame = +1 Query: 133 MGHSKPRRQRGHNYHESSHHRGQSSKFREPSREDQNENGDSLPTAQDE---------ANE 285 MGH+K RR +GH HRGQSS+F+EP RE DSLPT Q A E Sbjct: 1 MGHNKARRFKGHQ-----SHRGQSSRFQEPLREY-----DSLPTDQVAMGFNFCAVAAEE 50 Query: 286 EGPLVPNIQLAMWDFGQCDAKKCTGRKLSRFALLKE----LRVTSGFGGIVLSPVGTQCV 453 E VP +QLAMWDFGQCDAK+CTGRKLSRF LLKE LRVTSGFGGI LSPVG QCV Sbjct: 51 EELSVPKVQLAMWDFGQCDAKRCTGRKLSRFGLLKESIRLLRVTSGFGGIALSPVGNQCV 110 Query: 454 SKEDHLLMKRKGLAVVDCSWARLSDVPFVKLRCSAPRLLPWLVAANPVNYGRPCQLSCVE 633 SKED++L+KRKGLAVVDCSWARLSDVPF KLRC+APRLLPWLVAANPVNYGRPC+LSCVE Sbjct: 111 SKEDYILIKRKGLAVVDCSWARLSDVPFTKLRCAAPRLLPWLVAANPVNYGRPCELSCVE 170 Query: 634 ALSAALFLCGEEETANLLLGKFKWGHAFLSLNRELLKAYSECNNSTEIISVQNAWLSQNS 813 ALSAALF+CGEEETANLLLGKFKWGHAFLSLNRELLKAYS+C N EIISVQNAWLSQ Sbjct: 171 ALSAALFICGEEETANLLLGKFKWGHAFLSLNRELLKAYSKCENGAEIISVQNAWLSQQR 230 Query: 814 RVPRSPSQKDESSEVPMRNETGSDYDSEDGLPPLEKNSNHSIFEQSDSDSEDELPPLEKN 993 + DE+ ++ GS DSEDGLPPLEKN NH E +SDSED LPPLEKN Sbjct: 231 LQVQKALPDDEAGVSSQNDDEGSCDDSEDGLPPLEKNLNHLNLE--ESDSEDGLPPLEKN 288 Query: 994 MNRLAL 1011 +N L L Sbjct: 289 LNHLNL 294 >ref|XP_002528990.1| conserved hypothetical protein [Ricinus communis] gi|223531580|gb|EEF33409.1| conserved hypothetical protein [Ricinus communis] Length = 285 Score = 385 bits (988), Expect = e-104 Identities = 195/294 (66%), Positives = 224/294 (76%), Gaps = 5/294 (1%) Frame = +1 Query: 133 MGHSKPRRQRGHNYHESSHHRGQSSKFREPSREDQNENGDSLPTAQDEANEEGPLVPNIQ 312 MGH+KPRR + H+ +RGQSS+ RED++ D +P E+ P +Q Sbjct: 1 MGHNKPRRSKSHH-----SNRGQSSRTNLLEREDESLPSDQVP------EEDTNSTPRVQ 49 Query: 313 LAMWDFGQCDAKKCTGRKLSRFALLKELRVTSGFGGIVLSPVGTQCVSKEDHLLMKRKGL 492 LAMWDFGQCDAK+CTGRKL RF LLKELRV GFGGIVLSPVG+QCVSK+DH L+KRKGL Sbjct: 50 LAMWDFGQCDAKRCTGRKLGRFGLLKELRVNCGFGGIVLSPVGSQCVSKQDHSLIKRKGL 109 Query: 493 AVVDCSWARLSDVPFVKLRCSAPRLLPWLVAANPVNYGRPCQLSCVEALSAALFLCGEEE 672 AVVDCSWARL+DVPFVKLRC+APRLLPWLVAANPVNYGRPC+LSCVEALSAAL +CGEEE Sbjct: 110 AVVDCSWARLNDVPFVKLRCAAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEE 169 Query: 673 TANLLLGKFKWGHAFLSLNRELLKAYSECNNSTEIISVQNAWLSQNSRVPRSPSQKDESS 852 TA+LLL KFKWGHAFLSLNRELLKAYSEC NS +IISVQN WLSQ S+VP++ +S Sbjct: 170 TADLLLNKFKWGHAFLSLNRELLKAYSECENSADIISVQNGWLSQQSKVPKA---VPDSE 226 Query: 853 EVPMRNETGSDYDSEDGLPPLEKNSNHSIFEQSDSDSEDE-----LPPLEKNMN 999 E + GS DSEDGLPPLE+N NH FE SD D LP +KN++ Sbjct: 227 EAETSKDEGSCSDSEDGLPPLERNMNHLNFEDSDEDRPAGLLAMLLPVFQKNLS 280 >gb|AAZ67589.1| 80A08_4 [Brassica rapa subsp. pekinensis] Length = 449 Score = 381 bits (978), Expect = e-103 Identities = 191/299 (63%), Positives = 229/299 (76%), Gaps = 6/299 (2%) Frame = +1 Query: 133 MGHSKPRRQRGHNYHESSHHRGQSSKFREPSREDQNENGDSLPTAQDEANEEGPLVPNIQ 312 MG+ K RR RG N + GQ+S+ RED+ SLP D +E+ +VPN+Q Sbjct: 1 MGYGKHRRSRGGNSNP-----GQTSRTENIGREDE-----SLP--HDPGSEDEAVVPNVQ 48 Query: 313 LAMWDFGQCDAKKCTGRKLSRFALLKELRVTSGFGGIVLSPVGTQCVSKEDHLLMKRKGL 492 LAMWDFGQCDAK+CTGRKL+RF LLKELRV +GFGG+VLSPVG QCVSKED+ L+K +GL Sbjct: 49 LAMWDFGQCDAKRCTGRKLARFNLLKELRVNTGFGGVVLSPVGRQCVSKEDYALIKSRGL 108 Query: 493 AVVDCSWARLSDVPFVKLRCSAPRLLPWLVAANPVNYGRPCQLSCVEALSAALFLCGEEE 672 AVVDCSWARL+DVPF KLRC+APRLLPWLVAANPVNYGRPC+LSCVEALSAAL LCGEEE Sbjct: 109 AVVDCSWARLTDVPFAKLRCTAPRLLPWLVAANPVNYGRPCELSCVEALSAALILCGEEE 168 Query: 673 TANLLLGKFKWGHAFLSLNRELLKAYSECNNSTEIISVQNAWLSQNSRVPRSPSQKDESS 852 TANLLLGKFKWGHAFLSLN+++LK YS+C NS EIISVQN+WL+Q +++ + P+ E Sbjct: 169 TANLLLGKFKWGHAFLSLNKDILKEYSKCENSAEIISVQNSWLTQQTQISKQPAPLKE-- 226 Query: 853 EVPMRNETGSDYDSEDGLPPLEKNSNHSIFEQSDSDSEDE------LPPLEKNMNRLAL 1011 V + D D +DGLPPLE+N NH I E S+ + E+E LPPLE+NMN + L Sbjct: 227 HVRKEGDESEDDDEDDGLPPLERNMNHVISEDSEEEDEEEEEEDDGLPPLERNMNHVKL 285 >ref|NP_001049256.1| Os03g0195200 [Oryza sativa Japonica Group] gi|108706647|gb|ABF94442.1| Possible metal-binding domain in RNase L inhibitor, RLI family protein, expressed [Oryza sativa Japonica Group] gi|113547727|dbj|BAF11170.1| Os03g0195200 [Oryza sativa Japonica Group] gi|215697184|dbj|BAG91178.1| unnamed protein product [Oryza sativa Japonica Group] gi|218192253|gb|EEC74680.1| hypothetical protein OsI_10371 [Oryza sativa Indica Group] gi|222624365|gb|EEE58497.1| hypothetical protein OsJ_09762 [Oryza sativa Japonica Group] Length = 272 Score = 375 bits (963), Expect = e-101 Identities = 190/279 (68%), Positives = 216/279 (77%) Frame = +1 Query: 133 MGHSKPRRQRGHNYHESSHHRGQSSKFREPSREDQNENGDSLPTAQDEANEEGPLVPNIQ 312 MG+++ RR RG + SS Q + + + G SLP +D EE P P IQ Sbjct: 1 MGYNR-RRGRGSSSSSSSRRTKQEAAWDDGP-------GTSLPRQED--TEEEPKGPKIQ 50 Query: 313 LAMWDFGQCDAKKCTGRKLSRFALLKELRVTSGFGGIVLSPVGTQCVSKEDHLLMKRKGL 492 LAMWDFGQCD K+CTGRKLSRF LLKELRVT+GFGG+VLSPVGTQCVSKED +++RKGL Sbjct: 51 LAMWDFGQCDVKRCTGRKLSRFGLLKELRVTNGFGGVVLSPVGTQCVSKEDRHIVQRKGL 110 Query: 493 AVVDCSWARLSDVPFVKLRCSAPRLLPWLVAANPVNYGRPCQLSCVEALSAALFLCGEEE 672 AVVDCSWARLSDVPFVKLRC APRLLPWLVAANPVNYGRPC+LSCVEALSAAL +CGEEE Sbjct: 111 AVVDCSWARLSDVPFVKLRCGAPRLLPWLVAANPVNYGRPCELSCVEALSAALIICGEEE 170 Query: 673 TANLLLGKFKWGHAFLSLNRELLKAYSECNNSTEIISVQNAWLSQNSRVPRSPSQKDESS 852 TA+LLLGKFKWGH+FLS+NRELLKAYS+C N TEII+VQN+WLS NS VP+SP E S Sbjct: 171 TAHLLLGKFKWGHSFLSVNRELLKAYSQCENGTEIINVQNSWLSSNSNVPKSPVNAAEKS 230 Query: 853 EVPMRNETGSDYDSEDGLPPLEKNSNHSIFEQSDSDSED 969 E GSD DS+DGLPPLE+N NH F Q D E+ Sbjct: 231 H--QSTEEGSDADSDDGLPPLEENLNHLNFNQDDESEEE 267 >ref|XP_004163491.1| PREDICTED: ribosome biogenesis protein TSR3 homolog [Cucumis sativus] Length = 265 Score = 375 bits (962), Expect = e-101 Identities = 194/280 (69%), Positives = 219/280 (78%) Frame = +1 Query: 133 MGHSKPRRQRGHNYHESSHHRGQSSKFREPSREDQNENGDSLPTAQDEANEEGPLVPNIQ 312 M H+K RR + H+ RGQS++ + ED+ LP D ANEE P PNIQ Sbjct: 1 MSHNKTRRFKNHH-----PRRGQSTRGHKFIGEDE-----CLPV--DPANEEEPTRPNIQ 48 Query: 313 LAMWDFGQCDAKKCTGRKLSRFALLKELRVTSGFGGIVLSPVGTQCVSKEDHLLMKRKGL 492 LAMWDFGQCDAK+CTGRKL+RF LLKELRV SGFGGIVLSPVG CVSKEDH L+K+KGL Sbjct: 49 LAMWDFGQCDAKRCTGRKLARFGLLKELRVNSGFGGIVLSPVGVNCVSKEDHSLLKQKGL 108 Query: 493 AVVDCSWARLSDVPFVKLRCSAPRLLPWLVAANPVNYGRPCQLSCVEALSAALFLCGEEE 672 AVVDCSWARL DVPFVKLRC+APRLLPWLVAANPVNYGRPC+LSCVEAL+AAL +CGE E Sbjct: 109 AVVDCSWARLGDVPFVKLRCAAPRLLPWLVAANPVNYGRPCELSCVEALAAALIICGEGE 168 Query: 673 TANLLLGKFKWGHAFLSLNRELLKAYSECNNSTEIISVQNAWLSQNSRVPRSPSQKDESS 852 TA+LLLGKFKWGHAFLS+NRELLK YS C NS +IISVQNAWLSQ +VP+ P ++ S Sbjct: 169 TADLLLGKFKWGHAFLSVNRELLKQYSACENSADIISVQNAWLSQQRQVPKEPHNVEDKS 228 Query: 853 EVPMRNETGSDYDSEDGLPPLEKNSNHSIFEQSDSDSEDE 972 V +E GSD DSEDGLPPLEKN NH +Q +SD E E Sbjct: 229 SVSEHDE-GSD-DSEDGLPPLEKNLNHLTLQQ-ESDEESE 265