BLASTX nr result

ID: Coptis23_contig00001552 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00001552
         (492 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002303094.1| predicted protein [Populus trichocarpa] gi|2...   157   1e-36
ref|XP_003625470.1| CLIP-associating protein [Medicago truncatul...   150   1e-34
ref|XP_003625469.1| CLIP-associating protein [Medicago truncatul...   150   1e-34
ref|XP_003521327.1| PREDICTED: uncharacterized protein LOC100796...   150   1e-34
ref|XP_003554315.1| PREDICTED: uncharacterized protein LOC100820...   149   2e-34

>ref|XP_002303094.1| predicted protein [Populus trichocarpa] gi|222844820|gb|EEE82367.1|
           predicted protein [Populus trichocarpa]
          Length = 1426

 Score =  157 bits (396), Expect = 1e-36
 Identities = 92/158 (58%), Positives = 104/158 (65%)
 Frame = +1

Query: 19  KVRSTARSCYRMFTKTWPELSRASILIF*SIHLFMGSLIKGYMFPSIHGIPY**YETQCL 198
           +VRSTAR CYRMF KTWPE SR          LFM         P I  I          
Sbjct: 465 EVRSTARMCYRMFAKTWPERSR---------RLFMS------FDPVIQRI---------- 499

Query: 199 M*CISVWVINEERGGVHRRYASPSLRDRGGQSLRTPSQTPTSNVPGYGTSAIVAMDRSAT 378
                   +NEE GG+HRR+ASPS+RDR  Q+  TP  +  S+VPGYGTSAIVAMDR+++
Sbjct: 500 --------VNEEDGGLHRRHASPSIRDRSAQTSFTPQASAASHVPGYGTSAIVAMDRTSS 551

Query: 379 LPSGTPLSSGLVLSQAKSLGKGTERSLESVLHASKQKV 492
           L SGT LSSGL+LSQAKSLGKGTERSLESVLHASKQKV
Sbjct: 552 LSSGTSLSSGLLLSQAKSLGKGTERSLESVLHASKQKV 589


>ref|XP_003625470.1| CLIP-associating protein [Medicago truncatula]
           gi|355500485|gb|AES81688.1| CLIP-associating protein
           [Medicago truncatula]
          Length = 1156

 Score =  150 bits (379), Expect = 1e-34
 Identities = 88/164 (53%), Positives = 104/164 (63%)
 Frame = +1

Query: 1   LSSRWMKVRSTARSCYRMFTKTWPELSRASILIF*SIHLFMGSLIKGYMFPSIHGIPY** 180
           +S    +VRSTAR CYRMF KTWPE SR  +  F                P I  +    
Sbjct: 179 VSDAMSEVRSTARMCYRMFAKTWPERSRRLLSSF---------------DPVIQRL---- 219

Query: 181 YETQCLM*CISVWVINEERGGVHRRYASPSLRDRGGQSLRTPSQTPTSNVPGYGTSAIVA 360
                         INEE GG+HRR+ASPS+RDRG  +  +   + +SN PGYGTSAIVA
Sbjct: 220 --------------INEEDGGIHRRHASPSIRDRGALTSLSIQASASSNPPGYGTSAIVA 265

Query: 361 MDRSATLPSGTPLSSGLVLSQAKSLGKGTERSLESVLHASKQKV 492
           MDRS++L SGT +SSG++LSQAKSLGKGTERSLESVLHASKQKV
Sbjct: 266 MDRSSSLSSGTSVSSGVLLSQAKSLGKGTERSLESVLHASKQKV 309


>ref|XP_003625469.1| CLIP-associating protein [Medicago truncatula]
           gi|355500484|gb|AES81687.1| CLIP-associating protein
           [Medicago truncatula]
          Length = 1169

 Score =  150 bits (379), Expect = 1e-34
 Identities = 88/164 (53%), Positives = 104/164 (63%)
 Frame = +1

Query: 1   LSSRWMKVRSTARSCYRMFTKTWPELSRASILIF*SIHLFMGSLIKGYMFPSIHGIPY** 180
           +S    +VRSTAR CYRMF KTWPE SR  +  F                P I  +    
Sbjct: 179 VSDAMSEVRSTARMCYRMFAKTWPERSRRLLSSF---------------DPVIQRL---- 219

Query: 181 YETQCLM*CISVWVINEERGGVHRRYASPSLRDRGGQSLRTPSQTPTSNVPGYGTSAIVA 360
                         INEE GG+HRR+ASPS+RDRG  +  +   + +SN PGYGTSAIVA
Sbjct: 220 --------------INEEDGGIHRRHASPSIRDRGALTSLSIQASASSNPPGYGTSAIVA 265

Query: 361 MDRSATLPSGTPLSSGLVLSQAKSLGKGTERSLESVLHASKQKV 492
           MDRS++L SGT +SSG++LSQAKSLGKGTERSLESVLHASKQKV
Sbjct: 266 MDRSSSLSSGTSVSSGVLLSQAKSLGKGTERSLESVLHASKQKV 309


>ref|XP_003521327.1| PREDICTED: uncharacterized protein LOC100796697 [Glycine max]
          Length = 1440

 Score =  150 bits (378), Expect = 1e-34
 Identities = 85/164 (51%), Positives = 104/164 (63%)
 Frame = +1

Query: 1   LSSRWMKVRSTARSCYRMFTKTWPELSRASILIF*SIHLFMGSLIKGYMFPSIHGIPY** 180
           +S    +VRSTAR CYRMF KTWPE SR     F                P+I  +    
Sbjct: 458 VSDAMSEVRSTARMCYRMFAKTWPERSRRLFSSF---------------DPAIQRL---- 498

Query: 181 YETQCLM*CISVWVINEERGGVHRRYASPSLRDRGGQSLRTPSQTPTSNVPGYGTSAIVA 360
                         INEE GG+HRR+ASPS+RDRG  +  +   +  SN+PGYGTSAIVA
Sbjct: 499 --------------INEEDGGIHRRHASPSIRDRGAPTSLSSQASAPSNLPGYGTSAIVA 544

Query: 361 MDRSATLPSGTPLSSGLVLSQAKSLGKGTERSLESVLHASKQKV 492
           MD+S+++ SGT +SSG++LSQAKSLGKGTERSLES+LHASKQKV
Sbjct: 545 MDKSSSISSGTSISSGILLSQAKSLGKGTERSLESMLHASKQKV 588


>ref|XP_003554315.1| PREDICTED: uncharacterized protein LOC100820523 [Glycine max]
          Length = 1444

 Score =  149 bits (376), Expect = 2e-34
 Identities = 86/164 (52%), Positives = 103/164 (62%)
 Frame = +1

Query: 1   LSSRWMKVRSTARSCYRMFTKTWPELSRASILIF*SIHLFMGSLIKGYMFPSIHGIPY** 180
           +S    +VRSTAR CYRMF KTWPE SR     F                P+I  +    
Sbjct: 459 VSDAMSEVRSTARMCYRMFAKTWPERSRRLFSSF---------------DPAIQRL---- 499

Query: 181 YETQCLM*CISVWVINEERGGVHRRYASPSLRDRGGQSLRTPSQTPTSNVPGYGTSAIVA 360
                         INEE GG+HRR+ASPS+RDRG     +   +  SN+PGYGTSAIVA
Sbjct: 500 --------------INEEDGGMHRRHASPSIRDRGALMSLSSQASAPSNLPGYGTSAIVA 545

Query: 361 MDRSATLPSGTPLSSGLVLSQAKSLGKGTERSLESVLHASKQKV 492
           MDRS+++ SGT +SSG++LSQAKSLGKGTERSLES+LHASKQKV
Sbjct: 546 MDRSSSISSGTSISSGILLSQAKSLGKGTERSLESMLHASKQKV 589


Top