BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00001442
         (850 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABA94593.2| retrotransposon protein, putative, unclassified [...   103   4e-20
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga...   101   2e-19
gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...   100   4e-19
gb|AAO00713.1| retrotransposon protein, putative, unclassified [...   100   7e-19
gb|AAP54692.2| retrotransposon protein, putative, unclassified [...   100   7e-19

>gb|ABA94593.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1469

 Score =  103 bits (258), Expect = 4e-20
 Identities = 73/269 (27%), Positives = 114/269 (42%), Gaps = 5/269 (1%)
 Frame = +2

Query: 56   WRGVMNSKQAVEKGYMWRLGNGASIKTFTEPWITLNSKPILLSEYMKEEFSLSAVDSSKK 235
            WRG+ +  + ++KG +WR+GNG SI+ + +PW        L  +Y +   +       K 
Sbjct: 1058 WRGIEHGLELLKKGIIWRVGNGQSIRVWRDPW--------LPRDYSRRPITRKGNCCIKW 1109

Query: 236  VSDLLQSNHIDWNQERLGELF-PEPISKSIKLKGVRQDSQDKIIWRRDTKGAFKVKSSYK 412
            VSDLLQ +   W  +++ E F P  +   +K++       D + W  D  G F V+S Y 
Sbjct: 1110 VSDLLQDDG-TWRVDKVQEHFWPIDVEMILKIRTSASLESDFLAWHPDRLGKFSVRSVYH 1168

Query: 413  HISKATEKGECSKTN----LKTIRKIWELNIDAGTHQFIWKLYVGGLPTGDVLLKRKFKG 580
             +    E G+CS +      K+ ++IW  N+      F WK     LPT     KR  + 
Sbjct: 1169 LVVSLAETGDCSSSTEVLVNKSWKRIWACNVPQKVRIFAWKAISNSLPTMKNKKKRNLEL 1228

Query: 581  DASCAFCGRKLETYYHSFFGCEWSRAAWIGSELGLRGIQNAQKDVRIILDTMLNWRIKKN 760
             ++C  CG + E   H+   C+ +R  W  +    R I +         D +LN      
Sbjct: 1229 LSTCCICGAEEEDVAHALCHCQQARNLW-SAMYSARAISHDVNSAWSGTDWILNL----- 1282

Query: 761  DTEGEFAKLYSLKLLMEIWKGRNSIKFEK 847
                       L L+  IW  RN I   K
Sbjct: 1283 -----LEDAMFLMLMWRIWHNRNEITHGK 1306


>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1369

 Score =  101 bits (251), Expect = 2e-19
 Identities = 77/273 (28%), Positives = 124/273 (45%), Gaps = 5/273 (1%)
 Frame = +2

Query: 47   SFFWRGVMNSKQAVEKGYMWRLGNGASIKTFTEPWI-TLNSKPILLSEYMKEEFSLSAVD 223
            SF  + +++++  ++KG    +G+G     + +PW+ +L    I  +E + E+      D
Sbjct: 914  SFTCKSILSARAVIQKGMCRVIGDGRDTTIWGDPWVPSLERYSIAATEGVSED------D 967

Query: 224  SSKKVSDLLQSNHIDWNQERLGELFPEPISKSI-KLKGVRQDSQDKIIWRRDTKGAFKVK 400
              +KV +L+ ++   WN E L  LF    S +I ++    Q   D+ +W     G F V+
Sbjct: 968  GPQKVCELISNDR--WNVELLNTLFQPWESTAIQRIPVALQKKPDQWMWMMSKNGQFTVR 1025

Query: 401  SSYKHI---SKATEKGECSKTNLKTIRKIWELNIDAGTHQFIWKLYVGGLPTGDVLLKRK 571
            S+Y H     + T        NLK  +KIW+  I      F WK    GL     + KR 
Sbjct: 1026 SAYYHELLEDRKTGPSTSRGPNLKLWQKIWKAKIPPKVKLFSWKAIHNGLAVYTNMRKRG 1085

Query: 572  FKGDASCAFCGRKLETYYHSFFGCEWSRAAWIGSELGLRGIQNAQKDVRIILDTMLNWRI 751
               D +C  CG K ET  H  +GC+ S  AW  S L +          RI ++++L+   
Sbjct: 1086 MNIDGACPRCGEKEETTEHLIWGCDESSRAWYISPLRIHTGNIEAGSFRIWVESLLD--- 1142

Query: 752  KKNDTEGEFAKLYSLKLLMEIWKGRNSIKFEKK 850
                 + E+  L+ + +   IW GRN   FEKK
Sbjct: 1143 --THKDTEWWALFWM-ICWNIWLGRNKWVFEKK 1172


>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
            thaliana]
          Length = 1374

 Score =  100 bits (249), Expect = 4e-19
 Identities = 72/278 (25%), Positives = 128/278 (46%), Gaps = 12/278 (4%)
 Frame = +2

Query: 47   SFFWRGVMNSKQAVEKGYMWRLGNGASIKTFTEPWITLNSKPILLSEYMKEEFSLS--AV 220
            SF W+ +  ++  +++G    +GNG +I  +T+PWI   +KP   ++ +K    +S  A 
Sbjct: 905  SFAWKSIYEAQVLIKQGIRAVIGNGETINVWTDPWI--GAKPAKAAQAVKRSHLVSQYAA 962

Query: 221  DSSKKVSDLLQSNHIDWNQERLGELFPEPISKSI-KLKGVRQDSQDKIIWRRDTKGAFKV 397
            +S   V DLL  +  DWN   +  LFP+   ++I  L+   ++++D+  W     G + V
Sbjct: 963  NSIHVVKDLLLPDGRDWNWNLVSLLFPDNTQENILALRPGGKETRDRFTWEYSRSGHYSV 1022

Query: 398  KSSY----KHISKATEKGECSKTNLKTI-RKIWELNIDAGTHQFIWKLYVGGLPTGDVLL 562
            KS Y    + I++     E  + +L  I ++IW+L++    H F+W+     L     L 
Sbjct: 1023 KSGYWVMTEIINQRNNPQEVLQPSLDPIFQQIWKLDVPPKIHHFLWRCVNNCLSVASNLA 1082

Query: 563  KRKFKGDASCAFCGRKLETYYHSFFGCEWSRAAWIGSEL----GLRGIQNAQKDVRIILD 730
             R    + SC  C    ET  H  F C ++R  W  S L    G    ++  +++  +L 
Sbjct: 1083 YRHLAREKSCVRCPSHGETVNHLLFKCPFARLTWAISPLPAPPGGEWAESLFRNMHHVLS 1142

Query: 731  TMLNWRIKKNDTEGEFAKLYSLKLLMEIWKGRNSIKFE 844
                  + K+  E          +L  +WK RN + F+
Sbjct: 1143 ------VHKSQPEESDHHALIPWILWRLWKNRNDLVFK 1174


>gb|AAO00713.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1557

 Score = 99.8 bits (247), Expect = 7e-19
 Identities = 67/270 (24%), Positives = 121/270 (44%), Gaps = 10/270 (3%)
 Frame = +2

Query: 56   WRGVMNSKQAVEKGYMWRLGNGASIKTFTEPWI--TLNSKPILLSEYMKEEFSLSAVDSS 229
            W+ + +  + V+KG +WR+GNG S++ + +PW+   L+ +PI      +           
Sbjct: 1277 WQAIEHGLELVKKGIIWRIGNGRSVRVWQDPWLPRDLSRRPITPKNNCR----------I 1326

Query: 230  KKVSDLLQSNHIDWNQERLGELF-PEPISKSIKLKGVRQDSQDKIIWRRDTKGAFKVKSS 406
            K V+DL+  N + W+  ++ ++F P  +   +KL+   +D +D I W  D  G F V+++
Sbjct: 1327 KWVADLMLDNGM-WDANKINQIFLPVDVEIILKLRTSSRDEEDFIAWHPDKLGNFSVRTA 1385

Query: 407  YKHISKATEKGECSKTNLKTIRKIWEL----NIDAGTHQFIWKLYVGGLPTGDVLLKRKF 574
            Y+      ++   S ++   IRK WEL    N+ +    F W+     LPT D   KR  
Sbjct: 1386 YRLAENWAKEEASSSSSDVNIRKAWELLWKCNVPSKVKIFTWRATSNCLPTWDNKKKRNL 1445

Query: 575  KGDASCAFCGRKLETYYHSFFGCEWSRAAWIGSELGLRGIQNAQKDVRIILDTML---NW 745
            +   +C  CG + E   H+   C  ++  W+              D+ + +D  L   +W
Sbjct: 1446 EISDTCVICGMEKEDTMHALCRCPQAKHLWLA--------MKESNDLSLRMDDHLLGPSW 1497

Query: 746  RIKKNDTEGEFAKLYSLKLLMEIWKGRNSI 835
               +     +  +   L +L  IW   N I
Sbjct: 1498 LFNRLALLPDHEQPMFLMVLWRIWFVHNEI 1527


>gb|AAP54692.2| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1585

 Score = 99.8 bits (247), Expect = 7e-19
 Identities = 67/270 (24%), Positives = 121/270 (44%), Gaps = 10/270 (3%)
 Frame = +2

Query: 56   WRGVMNSKQAVEKGYMWRLGNGASIKTFTEPWI--TLNSKPILLSEYMKEEFSLSAVDSS 229
            W+ + +  + V+KG +WR+GNG S++ + +PW+   L+ +PI      +           
Sbjct: 1305 WQAIEHGLELVKKGIIWRIGNGRSVRVWQDPWLPRDLSRRPITPKNNCR----------I 1354

Query: 230  KKVSDLLQSNHIDWNQERLGELF-PEPISKSIKLKGVRQDSQDKIIWRRDTKGAFKVKSS 406
            K V+DL+  N + W+  ++ ++F P  +   +KL+   +D +D I W  D  G F V+++
Sbjct: 1355 KWVADLMLDNGM-WDANKINQIFLPVDVEIILKLRTSSRDEEDFIAWHPDKLGNFSVRTA 1413

Query: 407  YKHISKATEKGECSKTNLKTIRKIWEL----NIDAGTHQFIWKLYVGGLPTGDVLLKRKF 574
            Y+      ++   S ++   IRK WEL    N+ +    F W+     LPT D   KR  
Sbjct: 1414 YRLAENWAKEEASSSSSDVNIRKAWELLWKCNVPSKVKIFTWRATSNCLPTWDNKKKRNL 1473

Query: 575  KGDASCAFCGRKLETYYHSFFGCEWSRAAWIGSELGLRGIQNAQKDVRIILDTML---NW 745
            +   +C  CG + E   H+   C  ++  W+              D+ + +D  L   +W
Sbjct: 1474 EISDTCVICGMEKEDTMHALCRCPQAKHLWLA--------MKESNDLSLRMDDHLLGPSW 1525

Query: 746  RIKKNDTEGEFAKLYSLKLLMEIWKGRNSI 835
               +     +  +   L +L  IW   N I
Sbjct: 1526 LFNRLALLPDHEQPMFLMVLWRIWFVHNEI 1555