BLASTX nr result
ID: Coptis23_contig00001400
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00001400
(300 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002276749.1| PREDICTED: 20 kDa chaperonin, chloroplastic ... 107 1e-21
ref|NP_197572.1| chaperonin 20 [Arabidopsis thaliana] gi|3068793... 106 2e-21
ref|XP_003609972.1| 20 kDa chaperonin [Medicago truncatula] gi|3... 105 5e-21
gb|ACJ84537.1| unknown [Medicago truncatula] gi|388500526|gb|AFK... 105 5e-21
ref|XP_003609971.1| 20 kDa chaperonin [Medicago truncatula] gi|3... 105 5e-21
>ref|XP_002276749.1| PREDICTED: 20 kDa chaperonin, chloroplastic [Vitis vinifera]
gi|50660327|gb|AAT80888.1| chloroplast chaperonin 21
[Vitis vinifera] gi|297738526|emb|CBI27771.3| unnamed
protein product [Vitis vinifera]
Length = 251
Score = 107 bits (267), Expect = 1e-21
Identities = 55/79 (69%), Positives = 66/79 (83%)
Frame = +2
Query: 50 STLKPLGDRVLVKIKSAEEKTVGGILLPSTAQSKPQGGEVVAVGEGKTLGKNKLEITVKE 229
++LKPLGDRVLVKIK+AEEKTVGGILLP+TAQ+KPQGGEVVAVGEGKT+GKNKL+I VK
Sbjct: 58 TSLKPLGDRVLVKIKTAEEKTVGGILLPTTAQTKPQGGEVVAVGEGKTIGKNKLDICVKT 117
Query: 230 VILRFGYSLICSRIVGTAI 286
G ++ S+ GT +
Sbjct: 118 -----GAQVVYSKYAGTEV 131
Score = 57.0 bits (136), Expect = 2e-06
Identities = 27/44 (61%), Positives = 32/44 (72%)
Frame = +2
Query: 56 LKPLGDRVLVKIKSAEEKTVGGILLPSTAQSKPQGGEVVAVGEG 187
LKPL DRVL+K+ AEEKT GG+LL ++ KP G VVAVG G
Sbjct: 158 LKPLNDRVLIKVAEAEEKTAGGLLLTEASKEKPSIGTVVAVGPG 201
>ref|NP_197572.1| chaperonin 20 [Arabidopsis thaliana] gi|30687936|ref|NP_851045.1|
chaperonin 20 [Arabidopsis thaliana]
gi|334187803|ref|NP_001190350.1| chaperonin 20
[Arabidopsis thaliana] gi|297808145|ref|XP_002871956.1|
hypothetical protein ARALYDRAFT_488978 [Arabidopsis
lyrata subsp. lyrata]
gi|12643263|sp|O65282.2|CH10C_ARATH RecName: Full=20 kDa
chaperonin, chloroplastic; AltName: Full=Chaperonin 10;
Short=Ch-CPN10; Short=Cpn10; AltName: Full=Chaperonin
20; AltName: Full=Protein Cpn21; Flags: Precursor
gi|10179872|gb|AAG13931.1|AF268068_1 chaperonin 10
[Arabidopsis thaliana]
gi|16226815|gb|AAL16269.1|AF428339_1 AT5g20720/T1M15_120
[Arabidopsis thaliana]
gi|16226911|gb|AAL16296.1|AF428366_1 AT5g20720/T1M15_120
[Arabidopsis thaliana] gi|4127456|emb|CAA09368.1| Cpn21
protein [Arabidopsis thaliana]
gi|14334612|gb|AAK59484.1| putative chloroplast Cpn21
protein [Arabidopsis thaliana]
gi|14587373|dbj|BAB61619.1| chaperonin 20 [Arabidopsis
thaliana] gi|17065646|gb|AAL33817.1| putative
chloroplast Cpn21 protein [Arabidopsis thaliana]
gi|297317793|gb|EFH48215.1| hypothetical protein
ARALYDRAFT_488978 [Arabidopsis lyrata subsp. lyrata]
gi|332005498|gb|AED92881.1| chaperonin 20 [Arabidopsis
thaliana] gi|332005499|gb|AED92882.1| chaperonin 20
[Arabidopsis thaliana] gi|332005500|gb|AED92883.1|
chaperonin 20 [Arabidopsis thaliana]
Length = 253
Score = 106 bits (264), Expect = 2e-21
Identities = 54/79 (68%), Positives = 65/79 (82%)
Frame = +2
Query: 50 STLKPLGDRVLVKIKSAEEKTVGGILLPSTAQSKPQGGEVVAVGEGKTLGKNKLEITVKE 229
+++KPLGDRVLVKIK AEEKT+GGILLPSTAQSKPQGGEVVAVGEG+T+GKNK++ITV
Sbjct: 60 TSIKPLGDRVLVKIKEAEEKTLGGILLPSTAQSKPQGGEVVAVGEGRTIGKNKIDITVPT 119
Query: 230 VILRFGYSLICSRIVGTAI 286
G +I S+ GT +
Sbjct: 120 -----GAQIIYSKYAGTEV 133
Score = 57.0 bits (136), Expect = 2e-06
Identities = 27/52 (51%), Positives = 34/52 (65%)
Frame = +2
Query: 56 LKPLGDRVLVKIKSAEEKTVGGILLPSTAQSKPQGGEVVAVGEGKTLGKNKL 211
LKPL DRV +K+ AEEKT GG+LL T + KP G V+AVG G + K+
Sbjct: 160 LKPLNDRVFIKVAEAEEKTAGGLLLTETTKEKPSIGTVIAVGPGSLDEEGKI 211
>ref|XP_003609972.1| 20 kDa chaperonin [Medicago truncatula] gi|355511027|gb|AES92169.1|
20 kDa chaperonin [Medicago truncatula]
Length = 207
Score = 105 bits (261), Expect = 5e-21
Identities = 53/79 (67%), Positives = 65/79 (82%)
Frame = +2
Query: 50 STLKPLGDRVLVKIKSAEEKTVGGILLPSTAQSKPQGGEVVAVGEGKTLGKNKLEITVKE 229
+T+KPLGDRVLVKIK AEEKT GGILLPSTAQSKPQGGEVVA+G+GKT+GKNK++I+VK
Sbjct: 14 TTVKPLGDRVLVKIKDAEEKTQGGILLPSTAQSKPQGGEVVAIGDGKTVGKNKVDISVKA 73
Query: 230 VILRFGYSLICSRIVGTAI 286
G ++ S+ GT +
Sbjct: 74 -----GAQVVYSKYAGTEV 87
Score = 56.2 bits (134), Expect = 3e-06
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +2
Query: 56 LKPLGDRVLVKIKSAEEKTVGGILLPSTAQSKPQGGEVVAVGEG 187
LKPL DRVL+K+ AEEKT GG+LL + KP G V+AVG G
Sbjct: 114 LKPLNDRVLIKVAEAEEKTAGGLLLTEATKDKPSIGTVIAVGPG 157
>gb|ACJ84537.1| unknown [Medicago truncatula] gi|388500526|gb|AFK38329.1| unknown
[Medicago truncatula]
Length = 253
Score = 105 bits (261), Expect = 5e-21
Identities = 53/79 (67%), Positives = 65/79 (82%)
Frame = +2
Query: 50 STLKPLGDRVLVKIKSAEEKTVGGILLPSTAQSKPQGGEVVAVGEGKTLGKNKLEITVKE 229
+T+KPLGDRVLVKIK AEEKT GGILLPSTAQSKPQGGEVVA+G+GKT+GKNK++I+VK
Sbjct: 60 TTVKPLGDRVLVKIKDAEEKTQGGILLPSTAQSKPQGGEVVAIGDGKTVGKNKVDISVKA 119
Query: 230 VILRFGYSLICSRIVGTAI 286
G ++ S+ GT +
Sbjct: 120 -----GAQVVYSKYAGTEV 133
Score = 56.2 bits (134), Expect = 3e-06
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +2
Query: 56 LKPLGDRVLVKIKSAEEKTVGGILLPSTAQSKPQGGEVVAVGEG 187
LKPL DRVL+K+ AEEKT GG+LL + KP G V+AVG G
Sbjct: 160 LKPLNDRVLIKVAEAEEKTAGGLLLTEATKDKPSIGTVIAVGPG 203
>ref|XP_003609971.1| 20 kDa chaperonin [Medicago truncatula] gi|355511026|gb|AES92168.1|
20 kDa chaperonin [Medicago truncatula]
Length = 253
Score = 105 bits (261), Expect = 5e-21
Identities = 53/79 (67%), Positives = 65/79 (82%)
Frame = +2
Query: 50 STLKPLGDRVLVKIKSAEEKTVGGILLPSTAQSKPQGGEVVAVGEGKTLGKNKLEITVKE 229
+T+KPLGDRVLVKIK AEEKT GGILLPSTAQSKPQGGEVVA+G+GKT+GKNK++I+VK
Sbjct: 60 TTVKPLGDRVLVKIKDAEEKTQGGILLPSTAQSKPQGGEVVAIGDGKTVGKNKVDISVKA 119
Query: 230 VILRFGYSLICSRIVGTAI 286
G ++ S+ GT +
Sbjct: 120 -----GAQVVYSKYAGTEV 133
Score = 56.2 bits (134), Expect = 3e-06
Identities = 26/44 (59%), Positives = 31/44 (70%)
Frame = +2
Query: 56 LKPLGDRVLVKIKSAEEKTVGGILLPSTAQSKPQGGEVVAVGEG 187
LKPL DRVL+K+ AEEKT GG+LL + KP G V+AVG G
Sbjct: 160 LKPLNDRVLIKVAEAEEKTAGGLLLTEATKDKPSIGTVIAVGPG 203