BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00001338
         (984 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272295.1| PREDICTED: 50S ribosomal protein L21, chloro...   204   2e-50
ref|XP_002327335.1| predicted protein [Populus trichocarpa] gi|2...   192   1e-46
ref|XP_002526817.1| 50S ribosomal protein L21, putative [Ricinus...   191   2e-46
gb|ABK94900.1| unknown [Populus trichocarpa]                          190   5e-46
ref|XP_002891198.1| 50S ribosomal protein L21, chloroplast [Arab...   182   1e-43

>ref|XP_002272295.1| PREDICTED: 50S ribosomal protein L21, chloroplastic [Vitis
           vinifera] gi|297745266|emb|CBI40346.3| unnamed protein
           product [Vitis vinifera]
          Length = 209

 Score =  204 bits (520), Expect = 2e-50
 Identities = 126/211 (59%), Positives = 143/211 (67%), Gaps = 8/211 (3%)
 Frame = +3

Query: 39  ATITTVSFFPTPTSLTS-----NFKKQSLLFSKTNKPTFFSPISLTCSPSLQKSSYVPKF 203
           AT+   S   TPT+  S     +  K++L FS      F SP SLT S S +  S +PK 
Sbjct: 4   ATLAFFSSSLTPTATLSLKHKSSAPKKTLSFSNFG---FLSPHSLTLS-SRRPPSPLPKS 59

Query: 204 SETEAQPVIE---SQPDSELTQVAEFTDVETPKPEQIFAVVMIGGRQYIVFPGRFLTTQR 374
           SE E   VIE   S+P+SE  QV E    E PK E+IFAVVMIG RQYIVFPGR++ TQR
Sbjct: 60  SEFEPS-VIEVESSEPNSEALQVVEEPPPELPKREEIFAVVMIGSRQYIVFPGRYIYTQR 118

Query: 375 LKGANVNDKIILNKVLLVGTKTTTYIGQPVVTNAAVHAVVEDQGLNPXXXXXXXXXXXXX 554
           LKGA+VNDKIILN+VLLVGTKT+TYIG+PVV NAAVHAVVE+QGLNP             
Sbjct: 119 LKGADVNDKIILNRVLLVGTKTSTYIGKPVVPNAAVHAVVEEQGLNPKVMVFKYKKKKNY 178

Query: 555 XXXXGHRQPNTRIRITGITGYQDFPAVTLDS 647
               GHRQPNTRIRITGITGYQD PAVTLDS
Sbjct: 179 RRNIGHRQPNTRIRITGITGYQDSPAVTLDS 209


>ref|XP_002327335.1| predicted protein [Populus trichocarpa] gi|222835705|gb|EEE74140.1|
           predicted protein [Populus trichocarpa]
          Length = 227

 Score =  192 bits (488), Expect = 1e-46
 Identities = 109/196 (55%), Positives = 127/196 (64%), Gaps = 8/196 (4%)
 Frame = +3

Query: 84  TSNFKKQSLLFSKTNKPTFFSPISLTCSPSLQKSSYVPKFSETEAQ--------PVIESQ 239
           T N    SL+FSK  +PTFF+      +P        PKFSE+EA         PV E+ 
Sbjct: 48  TQNLSSSSLIFSK--RPTFFA------NP--------PKFSESEALVVEAEPEVPVSEAN 91

Query: 240 PDSELTQVAEFTDVETPKPEQIFAVVMIGGRQYIVFPGRFLTTQRLKGANVNDKIILNKV 419
           P+   TQ+ E    E PK E+IFAVVM+G RQYIV PGR+L  QRLKGANVNDK+ LNKV
Sbjct: 92  PEPAATQMVEVAKEEPPKREEIFAVVMVGSRQYIVIPGRWLYVQRLKGANVNDKVNLNKV 151

Query: 420 LLVGTKTTTYIGQPVVTNAAVHAVVEDQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRI 599
           LLVGT+T+ YIG+PVVTNA VHAVVE+QGL+                  GHRQPNTRIRI
Sbjct: 152 LLVGTRTSAYIGKPVVTNATVHAVVEEQGLDAKKIVFKYKKKKNYRRNIGHRQPNTRIRI 211

Query: 600 TGITGYQDFPAVTLDS 647
           TGITGYQD+P  TLDS
Sbjct: 212 TGITGYQDYPVSTLDS 227


>ref|XP_002526817.1| 50S ribosomal protein L21, putative [Ricinus communis]
           gi|223533821|gb|EEF35552.1| 50S ribosomal protein L21,
           putative [Ricinus communis]
          Length = 214

 Score =  191 bits (486), Expect = 2e-46
 Identities = 113/210 (53%), Positives = 137/210 (65%), Gaps = 17/210 (8%)
 Frame = +3

Query: 69  TPTSLTSNFKKQSLLFSKTNKPTFFSPISLTCSPSL----------QKSSYVP--KFSET 212
           T  SL S+F  Q  + +    P F S    + +P +           + S++P  K SE+
Sbjct: 6   TTLSLCSSFTAQCTISNHKQNPNFISKTHFSSNPKIGPFTKSHKLTTRPSFLPILKSSES 65

Query: 213 EAQPVIESQPDS--ELT-QVAEFTDV--ETPKPEQIFAVVMIGGRQYIVFPGRFLTTQRL 377
           +A PV+E +  +  EL  + A F +V  E  K E+IFAVVM+GGRQYIV PGRF+  QRL
Sbjct: 66  DA-PVLEVEDANAPELQPEPAPFVEVAKEETKREEIFAVVMVGGRQYIVIPGRFIYVQRL 124

Query: 378 KGANVNDKIILNKVLLVGTKTTTYIGQPVVTNAAVHAVVEDQGLNPXXXXXXXXXXXXXX 557
           KGANVNDK+ LNKVLLVGT+TTTYIG+PVVTNA VHAVVE+QGLNP              
Sbjct: 125 KGANVNDKVALNKVLLVGTRTTTYIGKPVVTNAVVHAVVEEQGLNPKVVVFKYKKKKNYR 184

Query: 558 XXXGHRQPNTRIRITGITGYQDFPAVTLDS 647
              GHRQPNTRIRITGITGYQD+PAVTLDS
Sbjct: 185 RNIGHRQPNTRIRITGITGYQDYPAVTLDS 214


>gb|ABK94900.1| unknown [Populus trichocarpa]
          Length = 225

 Score =  190 bits (482), Expect = 5e-46
 Identities = 109/196 (55%), Positives = 130/196 (66%), Gaps = 2/196 (1%)
 Frame = +3

Query: 66  PTPTSLTSNFKKQS--LLFSKTNKPTFFSPISLTCSPSLQKSSYVPKFSETEAQPVIESQ 239
           P   S ++  KK S  L+FSK  +PTFF+       P + +S      +ETE  PV E+ 
Sbjct: 39  PNFGSFSNTTKKLSSPLIFSK--RPTFFA------RPKVSESEAPVVEAETEV-PVSEAN 89

Query: 240 PDSELTQVAEFTDVETPKPEQIFAVVMIGGRQYIVFPGRFLTTQRLKGANVNDKIILNKV 419
           P+   TQ+ E    E  K E+IFAVVM+G RQYIV PGR+L  QRLKGANVNDKI+LNKV
Sbjct: 90  PEPAATQIVEVAKEEPTKREEIFAVVMVGSRQYIVIPGRWLYVQRLKGANVNDKIVLNKV 149

Query: 420 LLVGTKTTTYIGQPVVTNAAVHAVVEDQGLNPXXXXXXXXXXXXXXXXXGHRQPNTRIRI 599
           LLVGT+T+ YIG+PVVTNA+VHAVVE+QGL+                  GHRQPNTRIRI
Sbjct: 150 LLVGTRTSAYIGKPVVTNASVHAVVEEQGLDAKKIVFKYKRKKNYRRNIGHRQPNTRIRI 209

Query: 600 TGITGYQDFPAVTLDS 647
           TGITGYQDFP  TLDS
Sbjct: 210 TGITGYQDFPVSTLDS 225


>ref|XP_002891198.1| 50S ribosomal protein L21, chloroplast [Arabidopsis lyrata subsp.
           lyrata] gi|297337040|gb|EFH67457.1| 50S ribosomal
           protein L21, chloroplast [Arabidopsis lyrata subsp.
           lyrata]
          Length = 215

 Score =  182 bits (461), Expect = 1e-43
 Identities = 108/213 (50%), Positives = 139/213 (65%), Gaps = 12/213 (5%)
 Frame = +3

Query: 30  SKMATITTVSFFPTPTSLTSNFKKQSLLFSKTNKPTF--FSPISLTCSPSLQKSS----- 188
           S  AT++  S F    ++TS  ++ S +    +KP+     P+S   SPS   +S     
Sbjct: 3   SSSATLSLCSTFSAHCNVTS--RRSSTILCSLSKPSLNLAKPVSGFLSPSTASTSRTAFT 60

Query: 189 YVPKFSETEAQPVIESQP---DSELTQVAEFTDV--ETPKPEQIFAVVMIGGRQYIVFPG 353
             PKF+E+    V+E++P   D E   V++ ++V  E  K E+IFAVVM+GGRQYIVFPG
Sbjct: 61  VAPKFAES----VVEAEPETTDIEAVVVSDVSEVTEEKAKREEIFAVVMVGGRQYIVFPG 116

Query: 354 RFLTTQRLKGANVNDKIILNKVLLVGTKTTTYIGQPVVTNAAVHAVVEDQGLNPXXXXXX 533
           R+L TQRLK ANV+D+I+LNKVLLVGTKT TYIG+PVVTNA VHAVVE+QGLN       
Sbjct: 117 RYLYTQRLKDANVDDQIVLNKVLLVGTKTHTYIGKPVVTNATVHAVVENQGLNDKVVVFK 176

Query: 534 XXXXXXXXXXXGHRQPNTRIRITGITGYQDFPA 632
                      GHRQPNTRIRITGITGY+++PA
Sbjct: 177 YKPKKKYRRNIGHRQPNTRIRITGITGYEEYPA 209