BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00001318
         (855 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_188137.1| 30S ribosomal protein S20 [Arabidopsis thaliana...   166   5e-39
ref|XP_002882919.1| hypothetical protein ARALYDRAFT_897793 [Arab...   163   5e-38
ref|XP_002532240.1| 30S ribosomal protein S20, putative [Ricinus...   160   3e-37
ref|XP_002285149.1| PREDICTED: 30S ribosomal protein S20, chloro...   160   4e-37
ref|XP_004146049.1| PREDICTED: 30S ribosomal protein S20, chloro...   156   5e-36

>ref|NP_188137.1| 30S ribosomal protein S20 [Arabidopsis thaliana]
           gi|75308015|sp|Q9ASV6.1|RR20_ARATH RecName: Full=30S
           ribosomal protein S20, chloroplastic; Flags: Precursor
           gi|188036221|pdb|3BBN|T Chain T, Homology Model For The
           Spinach Chloroplast 30s Subunit Fitted To 9.4a Cryo-Em
           Map Of The 70s Chlororibosome.
           gi|13605653|gb|AAK32820.1|AF361807_1 AT3g15190/F4B12_10
           [Arabidopsis thaliana]
           gi|13899121|gb|AAK48982.1|AF370555_1 Unknown protein
           [Arabidopsis thaliana] gi|15777889|gb|AAL05905.1|
           AT3g15190/F4B12_10 [Arabidopsis thaliana]
           gi|18377542|gb|AAL66937.1| unknown protein [Arabidopsis
           thaliana] gi|21592469|gb|AAM64420.1| 30S ribosomal
           protein S20 [Arabidopsis thaliana]
           gi|332642109|gb|AEE75630.1| 30S ribosomal protein S20
           [Arabidopsis thaliana]
          Length = 202

 Score =  166 bits (421), Expect = 5e-39
 Identities = 93/191 (48%), Positives = 120/191 (62%), Gaps = 5/191 (2%)
 Frame = -1

Query: 813 IHCVSSCFSLQKKFPT-----INCTTSSRXXXXXXXXXXXXXXXLGFSRNLSSETSFSNG 649
           + C+SSC +L+ +F       I+C++ S                L FS+++S   +FS G
Sbjct: 5   VQCLSSCATLESQFKVLSLKGISCSSPSSSFSNRRGASATLSSSLSFSQSVSQCVAFSTG 64

Query: 648 GLWMXXXXXXXXXXXXXXVATTKKPDSXXXXXXXXXXXRIYNKSKKSELKTRMKKVLEAL 469
            LW+               A TKK DS           R+YNKSKKSE +TRMKKVLEAL
Sbjct: 65  NLWVQKPMRQLIVCEAA--APTKKADSAAKRARQAEKRRVYNKSKKSEARTRMKKVLEAL 122

Query: 468 DVLQKKTDAQSEEVLSIEKLIAEAYSAIDKAVKAGALHRNTGANRKSRLARRKKTVEIHH 289
           + L+KKTDAQ++E++++EKLI EAYSAIDKAVK  ALH+NTGA RKSRLARRKK VEIHH
Sbjct: 123 EGLKKKTDAQADEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHH 182

Query: 288 GWYTPASSLSA 256
           GWY P ++ +A
Sbjct: 183 GWYVPDAAAAA 193


>ref|XP_002882919.1| hypothetical protein ARALYDRAFT_897793 [Arabidopsis lyrata subsp.
           lyrata] gi|297328759|gb|EFH59178.1| hypothetical protein
           ARALYDRAFT_897793 [Arabidopsis lyrata subsp. lyrata]
          Length = 197

 Score =  163 bits (412), Expect = 5e-38
 Identities = 92/183 (50%), Positives = 116/183 (63%), Gaps = 3/183 (1%)
 Frame = -1

Query: 813 IHCVSSCFSLQKKFPTINC---TTSSRXXXXXXXXXXXXXXXLGFSRNLSSETSFSNGGL 643
           + C+SSC +L+ +F  ++    ++SS                L FS+++S   +FS+G L
Sbjct: 5   VQCLSSCATLESQFKVLSLKGISSSSSFSNRRGGASATLSSSLSFSQSVSQCVAFSSGNL 64

Query: 642 WMXXXXXXXXXXXXXXVATTKKPDSXXXXXXXXXXXRIYNKSKKSELKTRMKKVLEALDV 463
           W+               A TKK DS           RIYNKSKKSE +TRMKKVLEAL+ 
Sbjct: 65  WVQKPTRQLIVCEAA--APTKKADSAAKRARQAEKRRIYNKSKKSEARTRMKKVLEALEG 122

Query: 462 LQKKTDAQSEEVLSIEKLIAEAYSAIDKAVKAGALHRNTGANRKSRLARRKKTVEIHHGW 283
           L+KKTDAQ +E++++EKLI EAYSAIDKAVK  ALH+NTGA RKSRLARRKK VEIHHGW
Sbjct: 123 LKKKTDAQPDEIVTVEKLIGEAYSAIDKAVKVKALHKNTGARRKSRLARRKKAVEIHHGW 182

Query: 282 YTP 274
           Y P
Sbjct: 183 YVP 185


>ref|XP_002532240.1| 30S ribosomal protein S20, putative [Ricinus communis]
           gi|223528058|gb|EEF30134.1| 30S ribosomal protein S20,
           putative [Ricinus communis]
          Length = 185

 Score =  160 bits (405), Expect = 3e-37
 Identities = 96/184 (52%), Positives = 113/184 (61%)
 Frame = -1

Query: 822 MAAIHCVSSCFSLQKKFPTINCTTSSRXXXXXXXXXXXXXXXLGFSRNLSSETSFSNGGL 643
           MAA   +SSCFS+  K  +++ TT+S                  FS  +S +  F+ G L
Sbjct: 1   MAAAAVLSSCFSVPTKLKSLSLTTTSSSTITYPALRSL-----SFSSAISHDV-FNKGCL 54

Query: 642 WMXXXXXXXXXXXXXXVATTKKPDSXXXXXXXXXXXRIYNKSKKSELKTRMKKVLEALDV 463
            M               A  K+ DS           RIY+K+ KSE++TRMKKVLEALD 
Sbjct: 55  SMSIVKRPIGHSIVCEAAPKKRADSAAKRARQAEKRRIYHKAHKSEVRTRMKKVLEALDD 114

Query: 462 LQKKTDAQSEEVLSIEKLIAEAYSAIDKAVKAGALHRNTGANRKSRLARRKKTVEIHHGW 283
           L+KK+DAQ+EEVL IEKLIAEAYS IDKAVK G LHRNTGA RKSRLARRKK VEIHHGW
Sbjct: 115 LRKKSDAQAEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTGARRKSRLARRKKAVEIHHGW 174

Query: 282 YTPA 271
           YTPA
Sbjct: 175 YTPA 178


>ref|XP_002285149.1| PREDICTED: 30S ribosomal protein S20, chloroplastic [Vitis
           vinifera] gi|302142967|emb|CBI20262.3| unnamed protein
           product [Vitis vinifera]
          Length = 183

 Score =  160 bits (404), Expect = 4e-37
 Identities = 95/178 (53%), Positives = 108/178 (60%)
 Frame = -1

Query: 804 VSSCFSLQKKFPTINCTTSSRXXXXXXXXXXXXXXXLGFSRNLSSETSFSNGGLWMXXXX 625
           V+ C +L  KF  ++   SS                 GFS NLS +T FS G L +    
Sbjct: 8   VAHCLALPSKFRILSLNASSSSSCSVPFTSL------GFSSNLS-QTVFSKGRLSISTIR 60

Query: 624 XXXXXXXXXXVATTKKPDSXXXXXXXXXXXRIYNKSKKSELKTRMKKVLEALDVLQKKTD 445
                      A  +K DS           RIYNK++KSE++TRMKKVLE LD L+KK D
Sbjct: 61  GPTHHSIVCDAAPMRKADSAAKRVRQAEKRRIYNKARKSEIRTRMKKVLEELDGLKKKPD 120

Query: 444 AQSEEVLSIEKLIAEAYSAIDKAVKAGALHRNTGANRKSRLARRKKTVEIHHGWYTPA 271
           AQ+EEVL IEKLIAEAYS IDKAVK G LHRNTGA RKSRLARRKK VEIHHGWYTPA
Sbjct: 121 AQAEEVLPIEKLIAEAYSVIDKAVKVGTLHRNTGARRKSRLARRKKAVEIHHGWYTPA 178


>ref|XP_004146049.1| PREDICTED: 30S ribosomal protein S20, chloroplastic-like [Cucumis
           sativus] gi|449507080|ref|XP_004162928.1| PREDICTED: 30S
           ribosomal protein S20, chloroplastic-like [Cucumis
           sativus]
          Length = 184

 Score =  156 bits (395), Expect = 5e-36
 Identities = 95/181 (52%), Positives = 108/181 (59%)
 Frame = -1

Query: 798 SCFSLQKKFPTINCTTSSRXXXXXXXXXXXXXXXLGFSRNLSSETSFSNGGLWMXXXXXX 619
           +CFSL  KF  ++    S                  FS N+S  ++FSNG L M      
Sbjct: 7   TCFSLSSKFGNLSLNGFSSSIPAAPSSSTLRSL--SFSSNISL-SAFSNGCLSMRKTERL 63

Query: 618 XXXXXXXXVATTKKPDSXXXXXXXXXXXRIYNKSKKSELKTRMKKVLEALDVLQKKTDAQ 439
                    A   K DS           RIYNK++KSE+KTRMKKVLEALD L+KK +AQ
Sbjct: 64  HRYSVVCEAAPKSKVDSAAKRARQAEKRRIYNKARKSEIKTRMKKVLEALDGLKKKAEAQ 123

Query: 438 SEEVLSIEKLIAEAYSAIDKAVKAGALHRNTGANRKSRLARRKKTVEIHHGWYTPASSLS 259
           SEEVL IE LIAEAYS IDKAV+AG LHRNT A RKSRLARRKK VEIHHGWYTP S  +
Sbjct: 124 SEEVLPIETLIAEAYSVIDKAVRAGTLHRNTAARRKSRLARRKKAVEIHHGWYTPDSPAA 183

Query: 258 A 256
           A
Sbjct: 184 A 184