BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00001307
         (581 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|NP_001050253.1| Os03g0385900 [Oryza sativa Japonica Group] g...   115   7e-24
gb|AAT85310.1| small subunit ribosomal protein, putative [Oryza ...   115   7e-24
dbj|BAA12798.1| mitochondrial ribosomal protein S11 [Oryza sativ...   115   7e-24
ref|YP_005090385.1| ribosomal protein S11 (mitochondrion) [Phoen...   113   2e-23
ref|NP_001148535.1| ribosomal protein S11 containing protein [Ze...   112   3e-23

>ref|NP_001050253.1| Os03g0385900 [Oryza sativa Japonica Group]
           gi|108708513|gb|ABF96308.1| ribosomal protein S11
           containing protein, expressed [Oryza sativa Japonica
           Group] gi|113548724|dbj|BAF12167.1| Os03g0385900 [Oryza
           sativa Japonica Group] gi|215706382|dbj|BAG93238.1|
           unnamed protein product [Oryza sativa Japonica Group]
          Length = 332

 Score =  115 bits (287), Expect = 7e-24
 Identities = 66/140 (47%), Positives = 89/140 (63%), Gaps = 3/140 (2%)
 Frame = -2

Query: 553 TRLF-QSKWAKIKDVARFPSIL--QSNTFVTVTDSKGNIKTGASIGCLKDFKGKSRLSKF 383
           +R+F + K + +K    F  +L  ++ TFVTVTD +GN KTGAS GCL+D KG+SRLSK+
Sbjct: 195 SRIFDEHKQSLVKGKRDFVHVLLKRNKTFVTVTDVRGNKKTGASAGCLEDRKGRSRLSKY 254

Query: 382 AAKALAEHVGRSARNLGXXXXXXXXXXXXXXXXXKQAILSFRDGFTFGESNKRTTEDGIL 203
           AA+A AEHVGR+AR +G                 K+ ILSFR+GF      +   +  ++
Sbjct: 255 AAEATAEHVGRAARKMGLKSVVMKVKGTTFFNKKKKVILSFREGF---RGERVREQSPVV 311

Query: 202 SIRDVTQIPHNGCRLPKKVR 143
            I DVTQ+PHNGCRLPK+ R
Sbjct: 312 LIHDVTQLPHNGCRLPKQRR 331


>gb|AAT85310.1| small subunit ribosomal protein, putative [Oryza sativa Japonica
           Group]
          Length = 366

 Score =  115 bits (287), Expect = 7e-24
 Identities = 66/140 (47%), Positives = 89/140 (63%), Gaps = 3/140 (2%)
 Frame = -2

Query: 553 TRLF-QSKWAKIKDVARFPSIL--QSNTFVTVTDSKGNIKTGASIGCLKDFKGKSRLSKF 383
           +R+F + K + +K    F  +L  ++ TFVTVTD +GN KTGAS GCL+D KG+SRLSK+
Sbjct: 229 SRIFDEHKQSLVKGKRDFVHVLLKRNKTFVTVTDVRGNKKTGASAGCLEDRKGRSRLSKY 288

Query: 382 AAKALAEHVGRSARNLGXXXXXXXXXXXXXXXXXKQAILSFRDGFTFGESNKRTTEDGIL 203
           AA+A AEHVGR+AR +G                 K+ ILSFR+GF      +   +  ++
Sbjct: 289 AAEATAEHVGRAARKMGLKSVVMKVKGTTFFNKKKKVILSFREGF---RGERVREQSPVV 345

Query: 202 SIRDVTQIPHNGCRLPKKVR 143
            I DVTQ+PHNGCRLPK+ R
Sbjct: 346 LIHDVTQLPHNGCRLPKQRR 365


>dbj|BAA12798.1| mitochondrial ribosomal protein S11 [Oryza sativa Japonica Group]
           gi|125586487|gb|EAZ27151.1| hypothetical protein
           OsJ_11086 [Oryza sativa Japonica Group]
          Length = 254

 Score =  115 bits (287), Expect = 7e-24
 Identities = 66/140 (47%), Positives = 89/140 (63%), Gaps = 3/140 (2%)
 Frame = -2

Query: 553 TRLF-QSKWAKIKDVARFPSIL--QSNTFVTVTDSKGNIKTGASIGCLKDFKGKSRLSKF 383
           +R+F + K + +K    F  +L  ++ TFVTVTD +GN KTGAS GCL+D KG+SRLSK+
Sbjct: 117 SRIFDEHKQSLVKGKRDFVHVLLKRNKTFVTVTDVRGNKKTGASAGCLEDRKGRSRLSKY 176

Query: 382 AAKALAEHVGRSARNLGXXXXXXXXXXXXXXXXXKQAILSFRDGFTFGESNKRTTEDGIL 203
           AA+A AEHVGR+AR +G                 K+ ILSFR+GF      +   +  ++
Sbjct: 177 AAEATAEHVGRAARKMGLKSVVMKVKGTTFFNKKKKVILSFREGF---RGERVREQSPVV 233

Query: 202 SIRDVTQIPHNGCRLPKKVR 143
            I DVTQ+PHNGCRLPK+ R
Sbjct: 234 LIHDVTQLPHNGCRLPKQRR 253


>ref|YP_005090385.1| ribosomal protein S11 (mitochondrion) [Phoenix dactylifera]
           gi|343478437|gb|AEM43925.1| ribosomal protein S11
           (mitochondrion) [Phoenix dactylifera]
          Length = 171

 Score =  113 bits (283), Expect = 2e-23
 Identities = 61/118 (51%), Positives = 80/118 (67%)
 Frame = -2

Query: 496 ILQSNTFVTVTDSKGNIKTGASIGCLKDFKGKSRLSKFAAKALAEHVGRSARNLGXXXXX 317
           ++++ TFVTVTD++GN KTGAS GCL++ KG+SRLS++AA+A AEHVGRSAR +G     
Sbjct: 27  LIKNKTFVTVTDARGNKKTGASAGCLEERKGRSRLSRYAAEATAEHVGRSARKMGLKSVV 86

Query: 316 XXXXXXXXXXXXKQAILSFRDGFTFGESNKRTTEDGILSIRDVTQIPHNGCRLPKKVR 143
                        + ILS+R+GF  GE      +  I+ I DVTQ+PHNGCRLPKK R
Sbjct: 87  MKVKGSTYFRKKNKVILSWREGFR-GEG--VGDQSPIMYIHDVTQLPHNGCRLPKKRR 141


>ref|NP_001148535.1| ribosomal protein S11 containing protein [Zea mays]
           gi|195620090|gb|ACG31875.1| ribosomal protein S11
           containing protein [Zea mays]
           gi|223973845|gb|ACN31110.1| unknown [Zea mays]
           gi|413948359|gb|AFW81008.1| Ribosomal protein S11
           containing protein isoform 1 [Zea mays]
           gi|413948360|gb|AFW81009.1| Ribosomal protein S11
           containing protein isoform 2 [Zea mays]
          Length = 252

 Score =  112 bits (281), Expect = 3e-23
 Identities = 66/143 (46%), Positives = 83/143 (58%)
 Frame = -2

Query: 571 HQMFSSTRLFQSKWAKIKDVARFPSILQSNTFVTVTDSKGNIKTGASIGCLKDFKGKSRL 392
           H+ +S  R F     K K            TFVTVTDS GN KTGAS GCL+D KG+SRL
Sbjct: 123 HEQYSKKRAFVHVLLKRK-----------KTFVTVTDSSGNKKTGASAGCLEDRKGRSRL 171

Query: 391 SKFAAKALAEHVGRSARNLGXXXXXXXXXXXXXXXXXKQAILSFRDGFTFGESNKRTTED 212
           S++A++A+AE VGRSAR +G                 K+ ILSFR+GF      +   + 
Sbjct: 172 SRYASEAVAEQVGRSARKMGLSSIVMKVKGASFFKKKKKVILSFREGF---RGERVRDQS 228

Query: 211 GILSIRDVTQIPHNGCRLPKKVR 143
            I+ I DVTQ+PHNGCRLPK+ R
Sbjct: 229 PIMYIHDVTQLPHNGCRLPKQRR 251