BLASTX nr result
ID: Coptis23_contig00001298
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00001298
(2659 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002267979.1| PREDICTED: pentatricopeptide repeat-containi... 717 0.0
ref|XP_002331159.1| predicted protein [Populus trichocarpa] gi|1... 702 0.0
ref|XP_002527905.1| pentatricopeptide repeat-containing protein,... 696 0.0
ref|XP_003531991.1| PREDICTED: pentatricopeptide repeat-containi... 672 0.0
emb|CBI23460.3| unnamed protein product [Vitis vinifera] 644 0.0
>ref|XP_002267979.1| PREDICTED: pentatricopeptide repeat-containing protein At1g60770
[Vitis vinifera]
Length = 489
Score = 717 bits (1852), Expect = 0.0
Identities = 354/489 (72%), Positives = 408/489 (83%)
Frame = -2
Query: 2634 MAAVHFGRTKNIANRSKKYLEEALHKRLFREGSSDKAIRTELNQFLDSNKRVYKWEVGMS 2455
MA RTKNIA RSKKYLEEAL+ RLF++GSS+ ++R +LN FL S+KRV+KWEVG +
Sbjct: 1 MAMPQLSRTKNIAKRSKKYLEEALYDRLFKDGSSEVSVRQQLNHFLKSSKRVFKWEVGDT 60
Query: 2454 VKKLRQRKRFAPALKLAESMAKRGMNMTVSDQAIHLDIIAKTRGIPAAESFFVGLPEASK 2275
VKKLR RKRF PALKL+E+MAKRGMNMT+SDQAI+LD+I KTRG+ AAE++F+ LPE SK
Sbjct: 61 VKKLRDRKRFYPALKLSETMAKRGMNMTISDQAIYLDLITKTRGVAAAENYFIDLPETSK 120
Query: 2274 NHLCYGALLNCYCKELMTXXXXXXXXXXXXLRFDSTSMAYNSLMTLYTKAGQPERVPAII 2095
NHL YGALLNCYCKEL+T L+ +SM YNSLMTLYTK GQPE++P II
Sbjct: 121 NHLTYGALLNCYCKELLTEKAEALMERMKELKLGLSSMPYNSLMTLYTKIGQPEKIPTII 180
Query: 2094 QEMKASNVMPDSYTYNVWMRALAAVSDISGVERVIEEMKRDGRVSGDWTTYSNLASIYVG 1915
QE+K+ ++MPDSYTYN+WMRALAAV+DISGVERVIEEMKRDGRV+ DWTTYSNLASIYV
Sbjct: 181 QELKSLDIMPDSYTYNIWMRALAAVNDISGVERVIEEMKRDGRVASDWTTYSNLASIYVD 240
Query: 1914 AGMFEKAERALKELENRNACRDLYAYQYLITLYGRTGNLLEVHRVWRSLRLAFPKMANLS 1735
AG+FEKAE+ALKELE RNACRDL A+Q+LITLYGR GNLLEV+RVWRSLRLAFPK AN+S
Sbjct: 241 AGVFEKAEKALKELEKRNACRDLTAFQFLITLYGRIGNLLEVYRVWRSLRLAFPKTANVS 300
Query: 1734 YLNMIQVLVNLKDVPGAEKCFREWESVCSTYDIRIANALIGAYAKEGLLEKAETLKERAR 1555
YLNMIQVLVNLKD+PGAEKCFREWES CS YDIR+ANALIGAYAK+GLLEKAE LKE AR
Sbjct: 301 YLNMIQVLVNLKDLPGAEKCFREWESGCSIYDIRVANALIGAYAKDGLLEKAEELKEHAR 360
Query: 1554 RSGAKPNVKTWEIFMDYHLKKGNTSLAVDCVTNAISIGRGDGRKWVPPQNVVQTLMSHFE 1375
R GAKPN KTWEIF+ YHLK AVDCV NAIS GRGDG+KWVP ++ M HFE
Sbjct: 361 RRGAKPNAKTWEIFLAYHLKNREMKQAVDCVANAISTGRGDGQKWVPSPEIIGVFMQHFE 420
Query: 1374 QARDVEGAESFLETLKKVEDVFGADVFESLISTYAAAGKTSPSLRRRLKMENVDVSEATK 1195
Q +DV+GAE FLE LK + G +VFESLI YAAAG+TSP +RRRLKMENV+VS++ K
Sbjct: 421 QEKDVDGAEGFLEILKSTVEDLGVEVFESLIRIYAAAGRTSPVMRRRLKMENVEVSDSCK 480
Query: 1194 KLLEVVCVD 1168
KLLE V V+
Sbjct: 481 KLLEEVSVE 489
>ref|XP_002331159.1| predicted protein [Populus trichocarpa] gi|118487894|gb|ABK95769.1|
unknown [Populus trichocarpa] gi|222873242|gb|EEF10373.1|
predicted protein [Populus trichocarpa]
Length = 490
Score = 702 bits (1811), Expect = 0.0
Identities = 343/484 (70%), Positives = 406/484 (83%)
Frame = -2
Query: 2619 FGRTKNIANRSKKYLEEALHKRLFREGSSDKAIRTELNQFLDSNKRVYKWEVGMSVKKLR 2440
+GRTK++ RSKKYLEEAL+ RLF+EGSS+ ++R +LNQFL S+KRV+KWEVG ++KKLR
Sbjct: 7 YGRTKSVTKRSKKYLEEALYVRLFKEGSSEVSVRQQLNQFLKSSKRVFKWEVGDTIKKLR 66
Query: 2439 QRKRFAPALKLAESMAKRGMNMTVSDQAIHLDIIAKTRGIPAAESFFVGLPEASKNHLCY 2260
R + PA+KL+E+M+ RGMN TVSDQAIHLD++AKTRGIPAAE++F+ LPE SKN Y
Sbjct: 67 SRNLYYPAVKLSETMSSRGMNKTVSDQAIHLDLVAKTRGIPAAENYFIDLPETSKNLRTY 126
Query: 2259 GALLNCYCKELMTXXXXXXXXXXXXLRFDSTSMAYNSLMTLYTKAGQPERVPAIIQEMKA 2080
GALLNCYCKELMT L +SM+YNSLMTLYTK GQPER+PAIIQEMKA
Sbjct: 127 GALLNCYCKELMTEEAEALIEKMKELNLGLSSMSYNSLMTLYTKVGQPERIPAIIQEMKA 186
Query: 2079 SNVMPDSYTYNVWMRALAAVSDISGVERVIEEMKRDGRVSGDWTTYSNLASIYVGAGMFE 1900
NVMPDSYTYNVWMRALAAV+DISGVERVIEEMKRDGRV+ +WTTYSNLASIYV AG F+
Sbjct: 187 DNVMPDSYTYNVWMRALAAVNDISGVERVIEEMKRDGRVAANWTTYSNLASIYVDAGYFD 246
Query: 1899 KAERALKELENRNACRDLYAYQYLITLYGRTGNLLEVHRVWRSLRLAFPKMANLSYLNMI 1720
KAE+ALKELE NA +DL+A+Q+LITLYGRTG L+EV+R+WRSLRLAFPK AN+SYLNMI
Sbjct: 247 KAEKALKELEKINANKDLFAFQFLITLYGRTGKLIEVYRIWRSLRLAFPKTANISYLNMI 306
Query: 1719 QVLVNLKDVPGAEKCFREWESVCSTYDIRIANALIGAYAKEGLLEKAETLKERARRSGAK 1540
QVLVNLKDVPGAEKCFREWES CSTYDIR+AN +I AYAKEGL++KAE LKERARR GAK
Sbjct: 307 QVLVNLKDVPGAEKCFREWESGCSTYDIRVANVVISAYAKEGLVDKAEELKERARRRGAK 366
Query: 1539 PNVKTWEIFMDYHLKKGNTSLAVDCVTNAISIGRGDGRKWVPPQNVVQTLMSHFEQARDV 1360
PN KTWEIF DY+LK G+ L VDC+ NA+S GRG+G+KWVP +V +LM+HFEQ +DV
Sbjct: 367 PNSKTWEIFCDYYLKNGDVKLGVDCIANAVSAGRGNGQKWVPSPVIVGSLMAHFEQQKDV 426
Query: 1359 EGAESFLETLKKVEDVFGADVFESLISTYAAAGKTSPSLRRRLKMENVDVSEATKKLLEV 1180
+GAE +E LKK D +VFESLI TYAAAG+ S +RRRLKMENV+VS+ +KLLE
Sbjct: 427 DGAEDLIEILKKAVDDVAVEVFESLIRTYAAAGRKSQLMRRRLKMENVEVSDDCQKLLEA 486
Query: 1179 VCVD 1168
+CV+
Sbjct: 487 ICVE 490
>ref|XP_002527905.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223532680|gb|EEF34462.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 490
Score = 696 bits (1797), Expect = 0.0
Identities = 345/484 (71%), Positives = 402/484 (83%)
Frame = -2
Query: 2619 FGRTKNIANRSKKYLEEALHKRLFREGSSDKAIRTELNQFLDSNKRVYKWEVGMSVKKLR 2440
FGRTKN+A RSKKYLEEAL+ RLF+EGSS+ +R +LNQFL S+KRVYKWEVG ++KKLR
Sbjct: 7 FGRTKNVAKRSKKYLEEALYFRLFKEGSSEVKVREQLNQFLKSSKRVYKWEVGDTLKKLR 66
Query: 2439 QRKRFAPALKLAESMAKRGMNMTVSDQAIHLDIIAKTRGIPAAESFFVGLPEASKNHLCY 2260
R + PALKL+E+M+KRGMN TVSDQAIHLD++AKTRGIPAAE FF+ LPE SKNHL Y
Sbjct: 67 SRGLYYPALKLSEAMSKRGMNKTVSDQAIHLDLVAKTRGIPAAEIFFIDLPETSKNHLTY 126
Query: 2259 GALLNCYCKELMTXXXXXXXXXXXXLRFDSTSMAYNSLMTLYTKAGQPERVPAIIQEMKA 2080
GALLNCYC +LMT L +SM+YNSLMTLYTK GQPER+P IIQEMK+
Sbjct: 127 GALLNCYCNQLMTEEAEALMEKMKELNLGLSSMSYNSLMTLYTKIGQPERIPGIIQEMKS 186
Query: 2079 SNVMPDSYTYNVWMRALAAVSDISGVERVIEEMKRDGRVSGDWTTYSNLASIYVGAGMFE 1900
++MPDSYTYNVWMRALAAV+DISG ERVIEEMKRDGRV+ DWTTYSNLASIYV A +FE
Sbjct: 187 DSIMPDSYTYNVWMRALAAVNDISGAERVIEEMKRDGRVAADWTTYSNLASIYVDAQLFE 246
Query: 1899 KAERALKELENRNACRDLYAYQYLITLYGRTGNLLEVHRVWRSLRLAFPKMANLSYLNMI 1720
KAE+ LKELE RN RD A+Q+LITLYGR GNL E++R+WRSLRLAFPK +N+SYLNMI
Sbjct: 247 KAEKTLKELEKRNVHRDHSAFQFLITLYGRIGNLHELYRIWRSLRLAFPKTSNISYLNMI 306
Query: 1719 QVLVNLKDVPGAEKCFREWESVCSTYDIRIANALIGAYAKEGLLEKAETLKERARRSGAK 1540
QVLVNLKD+PGAEKCFREWES CS YDIR+AN LI AYAK+GLLEKAE LKERA GAK
Sbjct: 307 QVLVNLKDLPGAEKCFREWESNCSGYDIRVANVLIKAYAKKGLLEKAEELKERAIGRGAK 366
Query: 1539 PNVKTWEIFMDYHLKKGNTSLAVDCVTNAISIGRGDGRKWVPPQNVVQTLMSHFEQARDV 1360
PN KTWEIF DY+ + G+ L+V+C+ NAIS GRGDG+KW+P VV + M+HFEQ +DV
Sbjct: 367 PNAKTWEIFSDYYFENGDIKLSVECLANAISKGRGDGQKWIPSPEVVASFMAHFEQQKDV 426
Query: 1359 EGAESFLETLKKVEDVFGADVFESLISTYAAAGKTSPSLRRRLKMENVDVSEATKKLLEV 1180
+GAE F+E LKK D A+VFESLI TYAAAG+TS LRRRLKMENV+VSEA +KLLE+
Sbjct: 427 DGAEGFIEILKKATDDVEANVFESLIRTYAAAGRTSQVLRRRLKMENVEVSEAGQKLLEM 486
Query: 1179 VCVD 1168
+CV+
Sbjct: 487 ICVE 490
>ref|XP_003531991.1| PREDICTED: pentatricopeptide repeat-containing protein At1g60770-like
[Glycine max]
Length = 490
Score = 672 bits (1735), Expect = 0.0
Identities = 336/484 (69%), Positives = 394/484 (81%)
Frame = -2
Query: 2619 FGRTKNIANRSKKYLEEALHKRLFREGSSDKAIRTELNQFLDSNKRVYKWEVGMSVKKLR 2440
+GR+K++ RSKKYLEEAL+ +LF++GSS +R LN F+ S KRVYKWEVG ++KKLR
Sbjct: 7 YGRSKSVVKRSKKYLEEALYMKLFKDGSSQLIVRQSLNNFVKSRKRVYKWEVGDTLKKLR 66
Query: 2439 QRKRFAPALKLAESMAKRGMNMTVSDQAIHLDIIAKTRGIPAAESFFVGLPEASKNHLCY 2260
RK + PALKL+E+MAKR M TVSD AIHLD++AK RGI AAE++FV LPE SKNHLCY
Sbjct: 67 DRKLYQPALKLSETMAKRNMIKTVSDHAIHLDLLAKARGITAAENYFVSLPEPSKNHLCY 126
Query: 2259 GALLNCYCKELMTXXXXXXXXXXXXLRFDSTSMAYNSLMTLYTKAGQPERVPAIIQEMKA 2080
GALLNCYCKELMT L +SM YNSLMTLYTK GQPE++P++IQEMKA
Sbjct: 127 GALLNCYCKELMTEKSEGLMEKMKELSLPLSSMPYNSLMTLYTKVGQPEKIPSLIQEMKA 186
Query: 2079 SNVMPDSYTYNVWMRALAAVSDISGVERVIEEMKRDGRVSGDWTTYSNLASIYVGAGMFE 1900
SNVM DSYTYNVWMRALAAV+DISGVERV +EMKR G+V+GDWTTYSNLASI+V AG+F+
Sbjct: 187 SNVMLDSYTYNVWMRALAAVNDISGVERVHDEMKRGGQVTGDWTTYSNLASIFVDAGLFD 246
Query: 1899 KAERALKELENRNACRDLYAYQYLITLYGRTGNLLEVHRVWRSLRLAFPKMANLSYLNMI 1720
KAE ALKELE RNA +DL AYQ+LITLYGRTGNL EV+RVWRSLRLAFPK AN+SYLNMI
Sbjct: 247 KAEVALKELEKRNAFKDLTAYQFLITLYGRTGNLYEVYRVWRSLRLAFPKTANISYLNMI 306
Query: 1719 QVLVNLKDVPGAEKCFREWESVCSTYDIRIANALIGAYAKEGLLEKAETLKERARRSGAK 1540
QVLVNLKD+PGAEKCFREWE C TYDIR+AN LI AY K +LEKAE LKERARR GAK
Sbjct: 307 QVLVNLKDLPGAEKCFREWECGCPTYDIRVANVLIRAYVKLDMLEKAEELKERARRRGAK 366
Query: 1539 PNVKTWEIFMDYHLKKGNTSLAVDCVTNAISIGRGDGRKWVPPQNVVQTLMSHFEQARDV 1360
PN KT EIFMDY+L KG+ LAVD + AIS+GRG+G KWVP ++ +M HFEQ +DV
Sbjct: 367 PNAKTLEIFMDYYLLKGDFKLAVDYLNEAISMGRGNGEKWVPSSRIISIMMRHFEQEKDV 426
Query: 1359 EGAESFLETLKKVEDVFGADVFESLISTYAAAGKTSPSLRRRLKMENVDVSEATKKLLEV 1180
+GAE FLE LKK + G +VFESLI TYAAAG+ S +++RRLKMENV+VSE T+KLLE
Sbjct: 427 DGAEEFLEILKKSVESPGVEVFESLIRTYAAAGRISSAMQRRLKMENVEVSEGTQKLLEA 486
Query: 1179 VCVD 1168
+ V+
Sbjct: 487 ISVE 490
>emb|CBI23460.3| unnamed protein product [Vitis vinifera]
Length = 444
Score = 644 bits (1660), Expect = 0.0
Identities = 330/489 (67%), Positives = 378/489 (77%)
Frame = -2
Query: 2634 MAAVHFGRTKNIANRSKKYLEEALHKRLFREGSSDKAIRTELNQFLDSNKRVYKWEVGMS 2455
MA RTKNIA RSKKYLEEAL+ RLF++GSS+ ++R +LN FL S+KRV+KWEVG +
Sbjct: 1 MAMPQLSRTKNIAKRSKKYLEEALYDRLFKDGSSEVSVRQQLNHFLKSSKRVFKWEVGDT 60
Query: 2454 VKKLRQRKRFAPALKLAESMAKRGMNMTVSDQAIHLDIIAKTRGIPAAESFFVGLPEASK 2275
VKKLR RKRF PALKL+E+MAKRGMNMT+SDQAI+LD+I KTRG+ AAE++F+ LPE SK
Sbjct: 61 VKKLRDRKRFYPALKLSETMAKRGMNMTISDQAIYLDLITKTRGVAAAENYFIDLPETSK 120
Query: 2274 NHLCYGALLNCYCKELMTXXXXXXXXXXXXLRFDSTSMAYNSLMTLYTKAGQPERVPAII 2095
NHL YGALLNCYCKEL+T L+ +SM YNSLMTLYTK GQPE++P II
Sbjct: 121 NHLTYGALLNCYCKELLTEKAEALMERMKELKLGLSSMPYNSLMTLYTKIGQPEKIPTII 180
Query: 2094 QEMKASNVMPDSYTYNVWMRALAAVSDISGVERVIEEMKRDGRVSGDWTTYSNLASIYVG 1915
QE+K+ ++MPDSYTYN+WMRALAAV+DISGVERVIEEMKRDGRV+ DWTTYSNLASIYV
Sbjct: 181 QELKSLDIMPDSYTYNIWMRALAAVNDISGVERVIEEMKRDGRVASDWTTYSNLASIYVD 240
Query: 1914 AGMFEKAERALKELENRNACRDLYAYQYLITLYGRTGNLLEVHRVWRSLRLAFPKMANLS 1735
AG+FEKAE+ALKELE RNACRDL A+Q+LITLYGR GNLLEV+RVWRSLRLAFPK AN+S
Sbjct: 241 AGVFEKAEKALKELEKRNACRDLTAFQFLITLYGRIGNLLEVYRVWRSLRLAFPKTANVS 300
Query: 1734 YLNMIQVLVNLKDVPGAEKCFREWESVCSTYDIRIANALIGAYAKEGLLEKAETLKERAR 1555
YLNMIQVLVNLKD+PGAEKCFREWES CS YDIR+ANALIGAYAK+GLLEKAE LKE AR
Sbjct: 301 YLNMIQVLVNLKDLPGAEKCFREWESGCSIYDIRVANALIGAYAKDGLLEKAEELKEHAR 360
Query: 1554 RSGAKPNVKTWEIFMDYHLKKGNTSLAVDCVTNAISIGRGDGRKWVPPQNVVQTLMSHFE 1375
R GAKPN KTWEIF+ YHLK AVDCV NAIS
Sbjct: 361 RRGAKPNAKTWEIFLAYHLKNREMKQAVDCVANAIST----------------------- 397
Query: 1374 QARDVEGAESFLETLKKVEDVFGADVFESLISTYAAAGKTSPSLRRRLKMENVDVSEATK 1195
G +VFESLI YAAAG+TSP +RRRLKMENV+VS++ K
Sbjct: 398 ----------------------GVEVFESLIRIYAAAGRTSPVMRRRLKMENVEVSDSCK 435
Query: 1194 KLLEVVCVD 1168
KLLE V V+
Sbjct: 436 KLLEEVSVE 444