BLASTX nr result
ID: Coptis23_contig00001292
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00001292
(1638 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002298064.1| predicted protein [Populus trichocarpa] gi|2... 467 e-129
ref|XP_002271032.1| PREDICTED: elongation factor Tu, chloroplast... 464 e-128
ref|XP_002304468.1| predicted protein [Populus trichocarpa] gi|2... 464 e-128
ref|XP_002277301.1| PREDICTED: elongation factor Tu, chloroplast... 463 e-128
sp|Q43467.1|EFTU1_SOYBN RecName: Full=Elongation factor Tu, chlo... 462 e-127
>ref|XP_002298064.1| predicted protein [Populus trichocarpa] gi|222845322|gb|EEE82869.1|
predicted protein [Populus trichocarpa]
Length = 483
Score = 467 bits (1201), Expect = e-129
Identities = 229/251 (91%), Positives = 245/251 (97%)
Frame = -2
Query: 1154 SSYEFPGDDVPIISGSALLALEALMANPAIKKGDNTWVDKIYALMDAVDDYIPIPQRQTE 975
SSYEFPGDD+PIISGSALLALEALM NPAIK+G+N WVDKIY LMD VD+YIPIPQRQT+
Sbjct: 233 SSYEFPGDDIPIISGSALLALEALMENPAIKRGENQWVDKIYELMDNVDNYIPIPQRQTD 292
Query: 974 LPFLLAVEDVFSITGRGTVATGRVERGTVRVGETVELIGLRETRNTTVTGVEMFQKILDE 795
LPFLLAVEDVFSITGRGTVATGRVERGT+R G+TV+++GLRETRNTTVTGVEMFQKILDE
Sbjct: 293 LPFLLAVEDVFSITGRGTVATGRVERGTIRTGDTVDIVGLRETRNTTVTGVEMFQKILDE 352
Query: 794 ALAGDNVGILLRGIQKVDIQRGMVLAKPGSITPHTKFEAIVYVLKKEEGGRHSPFFAGYR 615
ALAGDNVG+LLRG+QK DIQRGMVL+KPGSITPHTKFEAIVYVLKKEEGGRHSPFFAGYR
Sbjct: 353 ALAGDNVGLLLRGVQKADIQRGMVLSKPGSITPHTKFEAIVYVLKKEEGGRHSPFFAGYR 412
Query: 614 PQFYMRTTDVTGRVASIMNDKDEESKMVMPGDRVKMIVELIMPVACEQGMRFAIREGGKT 435
PQFYMRTTDVTGRVA+IMNDKDEESKMVMPGDRVKMIVELIMPVACEQGMRFAIREGGKT
Sbjct: 413 PQFYMRTTDVTGRVATIMNDKDEESKMVMPGDRVKMIVELIMPVACEQGMRFAIREGGKT 472
Query: 434 VGAGVIQSIVE 402
VGAGVIQ+I+E
Sbjct: 473 VGAGVIQAIIE 483
Score = 204 bits (519), Expect = 6e-50
Identities = 102/116 (87%), Positives = 104/116 (89%)
Frame = -1
Query: 1638 DHGKXXXXXXXXXXXASIGGSASKKYDEIDAAPEERARGITINTATVEYETENRHYAHVD 1459
DHGK AS+GGSA KKYDEIDAAPEERARGITINTATVEYETE+RHYAHVD
Sbjct: 96 DHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVD 155
Query: 1458 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNK 1291
CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNK
Sbjct: 156 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNK 211
>ref|XP_002271032.1| PREDICTED: elongation factor Tu, chloroplastic-like isoform 1 [Vitis
vinifera] gi|359488736|ref|XP_003633809.1| PREDICTED:
elongation factor Tu, chloroplastic-like isoform 2 [Vitis
vinifera] gi|359488738|ref|XP_003633810.1| PREDICTED:
elongation factor Tu, chloroplastic-like isoform 3 [Vitis
vinifera]
Length = 487
Score = 464 bits (1195), Expect = e-128
Identities = 227/251 (90%), Positives = 244/251 (97%)
Frame = -2
Query: 1154 SSYEFPGDDVPIISGSALLALEALMANPAIKKGDNTWVDKIYALMDAVDDYIPIPQRQTE 975
+SYEFPGDD+PI+SGSALLALEALMANP+IK+G+N WVDKIY LMDAVD YIPIPQRQT+
Sbjct: 237 ASYEFPGDDIPIVSGSALLALEALMANPSIKRGENEWVDKIYELMDAVDSYIPIPQRQTD 296
Query: 974 LPFLLAVEDVFSITGRGTVATGRVERGTVRVGETVELIGLRETRNTTVTGVEMFQKILDE 795
LPFLLAVEDVFSITGRGTVATGRVERGT++VGETV+L+GLRETR TTVTGVEMFQKILDE
Sbjct: 297 LPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLRETRATTVTGVEMFQKILDE 356
Query: 794 ALAGDNVGILLRGIQKVDIQRGMVLAKPGSITPHTKFEAIVYVLKKEEGGRHSPFFAGYR 615
ALAGDNVG+LLRGIQK DIQRGMVLAKPG+ITPHTKF AIVY+LKKEEGGRHSPFFAGYR
Sbjct: 357 ALAGDNVGLLLRGIQKADIQRGMVLAKPGTITPHTKFSAIVYILKKEEGGRHSPFFAGYR 416
Query: 614 PQFYMRTTDVTGRVASIMNDKDEESKMVMPGDRVKMIVELIMPVACEQGMRFAIREGGKT 435
PQFYMRTTDVTG+VA IMNDKDEESKMVMPGDRVKM+VELIMPVACEQGMRFAIREGGKT
Sbjct: 417 PQFYMRTTDVTGKVAQIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKT 476
Query: 434 VGAGVIQSIVE 402
VGAGVIQSI+E
Sbjct: 477 VGAGVIQSIIE 487
Score = 202 bits (513), Expect = 3e-49
Identities = 101/116 (87%), Positives = 103/116 (88%)
Frame = -1
Query: 1638 DHGKXXXXXXXXXXXASIGGSASKKYDEIDAAPEERARGITINTATVEYETENRHYAHVD 1459
DHGK AS+G SA KKYDEIDAAPEERARGITINTATVEYETE+RHYAHVD
Sbjct: 100 DHGKTTLTAALTMALASMGNSAPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVD 159
Query: 1458 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNK 1291
CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNK
Sbjct: 160 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNK 215
>ref|XP_002304468.1| predicted protein [Populus trichocarpa] gi|222841900|gb|EEE79447.1|
predicted protein [Populus trichocarpa]
Length = 425
Score = 464 bits (1195), Expect = e-128
Identities = 227/251 (90%), Positives = 244/251 (97%)
Frame = -2
Query: 1154 SSYEFPGDDVPIISGSALLALEALMANPAIKKGDNTWVDKIYALMDAVDDYIPIPQRQTE 975
SSYEFPGDD+PIISGSALLALEALM NPAIK+G+N WVDKIY LMD VD+YIPIPQRQT+
Sbjct: 175 SSYEFPGDDIPIISGSALLALEALMENPAIKRGENQWVDKIYELMDNVDNYIPIPQRQTD 234
Query: 974 LPFLLAVEDVFSITGRGTVATGRVERGTVRVGETVELIGLRETRNTTVTGVEMFQKILDE 795
LPFLLAVEDVFSITGRGTVATGRVERGT++ G+TV+++GLRETRN TVTGVEMFQKILDE
Sbjct: 235 LPFLLAVEDVFSITGRGTVATGRVERGTIKTGDTVDIVGLRETRNVTVTGVEMFQKILDE 294
Query: 794 ALAGDNVGILLRGIQKVDIQRGMVLAKPGSITPHTKFEAIVYVLKKEEGGRHSPFFAGYR 615
ALAGDNVG+LLRG+QK DIQRGMVL+KPGSITPHTKFEAIVYVLKKEEGGRHSPFFAGYR
Sbjct: 295 ALAGDNVGLLLRGVQKADIQRGMVLSKPGSITPHTKFEAIVYVLKKEEGGRHSPFFAGYR 354
Query: 614 PQFYMRTTDVTGRVASIMNDKDEESKMVMPGDRVKMIVELIMPVACEQGMRFAIREGGKT 435
PQFYMRTTDVTGRVA+IMNDKDEESKMVMPGDRVKM+VELIMPVACEQGMRFAIREGGKT
Sbjct: 355 PQFYMRTTDVTGRVATIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKT 414
Query: 434 VGAGVIQSIVE 402
VGAGVIQSI+E
Sbjct: 415 VGAGVIQSIIE 425
Score = 204 bits (519), Expect = 6e-50
Identities = 102/116 (87%), Positives = 104/116 (89%)
Frame = -1
Query: 1638 DHGKXXXXXXXXXXXASIGGSASKKYDEIDAAPEERARGITINTATVEYETENRHYAHVD 1459
DHGK AS+GGSA KKYDEIDAAPEERARGITINTATVEYETE+RHYAHVD
Sbjct: 38 DHGKTTLTAALTMALASMGGSAPKKYDEIDAAPEERARGITINTATVEYETESRHYAHVD 97
Query: 1458 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNK 1291
CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNK
Sbjct: 98 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNK 153
>ref|XP_002277301.1| PREDICTED: elongation factor Tu, chloroplastic-like [Vitis vinifera]
Length = 486
Score = 463 bits (1192), Expect = e-128
Identities = 226/251 (90%), Positives = 245/251 (97%)
Frame = -2
Query: 1154 SSYEFPGDDVPIISGSALLALEALMANPAIKKGDNTWVDKIYALMDAVDDYIPIPQRQTE 975
SSYEFPGDDVPIISGSALLALEALMANP+IK+G+N WVDKIY LMD+VD YIPIPQRQT+
Sbjct: 236 SSYEFPGDDVPIISGSALLALEALMANPSIKRGENQWVDKIYELMDSVDSYIPIPQRQTD 295
Query: 974 LPFLLAVEDVFSITGRGTVATGRVERGTVRVGETVELIGLRETRNTTVTGVEMFQKILDE 795
LPFLLA+EDVFSITGRGTVATGRVERGT++VGETV+++GL++TR+TTVTGVEMFQKILDE
Sbjct: 296 LPFLLAIEDVFSITGRGTVATGRVERGTIKVGETVDIVGLKDTRSTTVTGVEMFQKILDE 355
Query: 794 ALAGDNVGILLRGIQKVDIQRGMVLAKPGSITPHTKFEAIVYVLKKEEGGRHSPFFAGYR 615
ALAGDNVGILLRG+QK DIQRGMVLAKPG+ITPHTKF AIVYVLKKEEGGRHSPFFAGYR
Sbjct: 356 ALAGDNVGILLRGVQKADIQRGMVLAKPGTITPHTKFAAIVYVLKKEEGGRHSPFFAGYR 415
Query: 614 PQFYMRTTDVTGRVASIMNDKDEESKMVMPGDRVKMIVELIMPVACEQGMRFAIREGGKT 435
PQFYMRTTDVTG+V SIMNDKDEESKMVMPGDRVKM+VELIMPVACEQGMRFAIREGGKT
Sbjct: 416 PQFYMRTTDVTGKVTSIMNDKDEESKMVMPGDRVKMVVELIMPVACEQGMRFAIREGGKT 475
Query: 434 VGAGVIQSIVE 402
VGAGVIQSI+E
Sbjct: 476 VGAGVIQSIIE 486
Score = 202 bits (515), Expect = 2e-49
Identities = 101/116 (87%), Positives = 103/116 (88%)
Frame = -1
Query: 1638 DHGKXXXXXXXXXXXASIGGSASKKYDEIDAAPEERARGITINTATVEYETENRHYAHVD 1459
DHGK A++G SA KKYDEIDAAPEERARGITINTATVEYETENRHYAHVD
Sbjct: 99 DHGKTTLTAALTMALAAMGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVD 158
Query: 1458 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNK 1291
CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNK
Sbjct: 159 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNK 214
>sp|Q43467.1|EFTU1_SOYBN RecName: Full=Elongation factor Tu, chloroplastic; Short=EF-Tu;
Flags: Precursor gi|18776|emb|CAA46864.1| EF-Tu [Glycine
max] gi|448921|prf||1918220A elongation factor Tu
Length = 479
Score = 462 bits (1189), Expect = e-127
Identities = 226/251 (90%), Positives = 243/251 (96%)
Frame = -2
Query: 1154 SSYEFPGDDVPIISGSALLALEALMANPAIKKGDNTWVDKIYALMDAVDDYIPIPQRQTE 975
SSYEFPGDD PI+SGSALLALEALMANPAIK+GDN WVDKI+ LMD VD+YIPIPQRQT+
Sbjct: 229 SSYEFPGDDTPIVSGSALLALEALMANPAIKRGDNEWVDKIFQLMDEVDNYIPIPQRQTD 288
Query: 974 LPFLLAVEDVFSITGRGTVATGRVERGTVRVGETVELIGLRETRNTTVTGVEMFQKILDE 795
LPFLLAVEDVFSITGRGTVATGRVERGT++VGETV+L+GLRETRNTTVTGVEMFQKILDE
Sbjct: 289 LPFLLAVEDVFSITGRGTVATGRVERGTIKVGETVDLVGLRETRNTTVTGVEMFQKILDE 348
Query: 794 ALAGDNVGILLRGIQKVDIQRGMVLAKPGSITPHTKFEAIVYVLKKEEGGRHSPFFAGYR 615
ALAGDNVG+LLRG+QK DIQRGMVLAKPG+ITPHTKF AIVYVLKKEEGGRHSPFFAGYR
Sbjct: 349 ALAGDNVGLLLRGVQKTDIQRGMVLAKPGTITPHTKFSAIVYVLKKEEGGRHSPFFAGYR 408
Query: 614 PQFYMRTTDVTGRVASIMNDKDEESKMVMPGDRVKMIVELIMPVACEQGMRFAIREGGKT 435
PQFYMRTTDVTG+V SIMNDKDEES MV+PGDRVKM+VELI+PVACEQGMRFAIREGGKT
Sbjct: 409 PQFYMRTTDVTGKVTSIMNDKDEESTMVLPGDRVKMVVELIVPVACEQGMRFAIREGGKT 468
Query: 434 VGAGVIQSIVE 402
VGAGVIQSI+E
Sbjct: 469 VGAGVIQSIIE 479
Score = 202 bits (514), Expect = 2e-49
Identities = 100/116 (86%), Positives = 103/116 (88%)
Frame = -1
Query: 1638 DHGKXXXXXXXXXXXASIGGSASKKYDEIDAAPEERARGITINTATVEYETENRHYAHVD 1459
DHGK A++G SA KKYDEIDAAPEERARGITINTATVEYETENRHYAHVD
Sbjct: 92 DHGKTTLTAALTMALAALGNSAPKKYDEIDAAPEERARGITINTATVEYETENRHYAHVD 151
Query: 1458 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHILLAKQVGVPNMVVFLNK 1291
CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI+LAKQVGVPNMVVFLNK
Sbjct: 152 CPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHIILAKQVGVPNMVVFLNK 207