BLASTX nr result
ID: Coptis23_contig00001247
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00001247
(448 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002532501.1| 116 kD U5 small nuclear ribonucleoprotein co... 136 3e-33
ref|XP_003609507.1| 116 kDa U5 small nuclear ribonucleoprotein c... 134 2e-32
ref|NP_172112.1| U5 small nuclear ribonucleoprotein component [A... 133 2e-32
ref|XP_002889592.1| hypothetical protein ARALYDRAFT_470642 [Arab... 133 2e-32
dbj|BAD94207.1| elongation factor like protein [Arabidopsis thal... 131 8e-32
>ref|XP_002532501.1| 116 kD U5 small nuclear ribonucleoprotein component, putative
[Ricinus communis] gi|223527776|gb|EEF29877.1| 116 kD U5
small nuclear ribonucleoprotein component, putative
[Ricinus communis]
Length = 992
Score = 136 bits (342), Expect(2) = 3e-33
Identities = 73/108 (67%), Positives = 81/108 (75%), Gaps = 8/108 (7%)
Frame = +3
Query: 90 ECIMKDLRELYSEVEVKVADPVVSFCEMVVESSYIHEMFC*NTQQKEQNHY----EPFEK 257
+ IMKDLRELYSEVEVKVADPVVSFCE VVESS M C ++N EP EK
Sbjct: 657 DSIMKDLRELYSEVEVKVADPVVSFCETVVESS---SMKCFAETPNKKNKITMIAEPLEK 713
Query: 258 GLAQDIENGIASIDWNRKTIGEFF----DWDLLAARSIWAFGPNKQVP 389
GLA+DIENG+ SIDWNRK +G+FF DWDLLAARSIWAFGP+KQ P
Sbjct: 714 GLAEDIENGVVSIDWNRKALGDFFKTKYDWDLLAARSIWAFGPDKQGP 761
Score = 30.4 bits (67), Expect(2) = 3e-33
Identities = 16/22 (72%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = +1
Query: 385 FQWGAR-GAL*YKPIGNVKFKI 447
FQWGAR G L +PI NVKFKI
Sbjct: 789 FQWGAREGPLCDEPIRNVKFKI 810
>ref|XP_003609507.1| 116 kDa U5 small nuclear ribonucleoprotein component [Medicago
truncatula] gi|355510562|gb|AES91704.1| 116 kDa U5 small
nuclear ribonucleoprotein component [Medicago
truncatula]
Length = 983
Score = 134 bits (336), Expect(2) = 2e-32
Identities = 72/108 (66%), Positives = 80/108 (74%), Gaps = 8/108 (7%)
Frame = +3
Query: 90 ECIMKDLRELYSEVEVKVADPVVSFCEMVVESSYIHEMFC*NTQQKEQNHY----EPFEK 257
+ IMKDLRELYSEVEVKVADPVVSFCE VVESS M C ++N EP E+
Sbjct: 653 DSIMKDLRELYSEVEVKVADPVVSFCETVVESS---SMKCFAETPNKKNKITMIAEPLER 709
Query: 258 GLAQDIENGIASIDWNRKTIGEFF----DWDLLAARSIWAFGPNKQVP 389
GLA+DIENG+ S DWNRK +GEFF DWDLLAARSIWAFGP+KQ P
Sbjct: 710 GLAEDIENGVVSTDWNRKKLGEFFQTKYDWDLLAARSIWAFGPDKQGP 757
Score = 30.4 bits (67), Expect(2) = 2e-32
Identities = 16/22 (72%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = +1
Query: 385 FQWGAR-GAL*YKPIGNVKFKI 447
FQWGAR G L +PI NVKFKI
Sbjct: 785 FQWGAREGPLCDEPIRNVKFKI 806
>ref|NP_172112.1| U5 small nuclear ribonucleoprotein component [Arabidopsis thaliana]
gi|30679607|ref|NP_849600.1| U5 small nuclear
ribonucleoprotein component [Arabidopsis thaliana]
gi|8844127|gb|AAF80219.1|AC025290_8 Contains similarity
to an U5 snRNP-specific protein 116 kD from Homo sapiens
gi|4759280 and contains elongation factor G C-terminus
PF|00679 and is a member of the elongation factor Tu
family PF|00009 [Arabidopsis thaliana]
gi|110741512|dbj|BAE98706.1| elongation factor like
protein [Arabidopsis thaliana]
gi|332189840|gb|AEE27961.1| U5 small nuclear
ribonucleoprotein component [Arabidopsis thaliana]
gi|332189841|gb|AEE27962.1| U5 small nuclear
ribonucleoprotein component [Arabidopsis thaliana]
Length = 987
Score = 133 bits (335), Expect(2) = 2e-32
Identities = 71/108 (65%), Positives = 81/108 (75%), Gaps = 8/108 (7%)
Frame = +3
Query: 90 ECIMKDLRELYSEVEVKVADPVVSFCEMVVESSYIHEMFC*NTQQKEQNHY----EPFEK 257
+ IMKDLRELYSEVEVKVADPVVSFCE VVESS M C ++N EP ++
Sbjct: 652 DSIMKDLRELYSEVEVKVADPVVSFCETVVESS---SMKCFAETPNKKNKITMIAEPLDR 708
Query: 258 GLAQDIENGIASIDWNRKTIGEFF----DWDLLAARSIWAFGPNKQVP 389
GLA+DIENG+ SIDWNRK +G+FF DWDLLAARSIWAFGP+KQ P
Sbjct: 709 GLAEDIENGVVSIDWNRKQLGDFFRTKYDWDLLAARSIWAFGPDKQGP 756
Score = 30.4 bits (67), Expect(2) = 2e-32
Identities = 16/22 (72%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = +1
Query: 385 FQWGAR-GAL*YKPIGNVKFKI 447
FQWGAR G L +PI NVKFKI
Sbjct: 784 FQWGAREGPLCDEPIRNVKFKI 805
>ref|XP_002889592.1| hypothetical protein ARALYDRAFT_470642 [Arabidopsis lyrata subsp.
lyrata] gi|297335434|gb|EFH65851.1| hypothetical protein
ARALYDRAFT_470642 [Arabidopsis lyrata subsp. lyrata]
Length = 987
Score = 133 bits (335), Expect(2) = 2e-32
Identities = 71/108 (65%), Positives = 81/108 (75%), Gaps = 8/108 (7%)
Frame = +3
Query: 90 ECIMKDLRELYSEVEVKVADPVVSFCEMVVESSYIHEMFC*NTQQKEQNHY----EPFEK 257
+ IMKDLRELYSEVEVKVADPVVSFCE VVESS M C ++N EP ++
Sbjct: 652 DSIMKDLRELYSEVEVKVADPVVSFCETVVESS---SMKCFAETPNKKNKITMIAEPLDR 708
Query: 258 GLAQDIENGIASIDWNRKTIGEFF----DWDLLAARSIWAFGPNKQVP 389
GLA+DIENG+ SIDWNRK +G+FF DWDLLAARSIWAFGP+KQ P
Sbjct: 709 GLAEDIENGVVSIDWNRKQLGDFFRTKYDWDLLAARSIWAFGPDKQGP 756
Score = 30.4 bits (67), Expect(2) = 2e-32
Identities = 16/22 (72%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = +1
Query: 385 FQWGAR-GAL*YKPIGNVKFKI 447
FQWGAR G L +PI NVKFKI
Sbjct: 784 FQWGAREGPLCDEPIRNVKFKI 805
>dbj|BAD94207.1| elongation factor like protein [Arabidopsis thaliana]
Length = 333
Score = 131 bits (330), Expect(2) = 8e-32
Identities = 70/105 (66%), Positives = 79/105 (75%), Gaps = 8/105 (7%)
Frame = +3
Query: 99 MKDLRELYSEVEVKVADPVVSFCEMVVESSYIHEMFC*NTQQKEQNHY----EPFEKGLA 266
MKDLRELYSEVEVKVADPVVSFCE VVESS M C ++N EP ++GLA
Sbjct: 1 MKDLRELYSEVEVKVADPVVSFCETVVESS---SMKCFAETPNKKNKITMIAEPLDRGLA 57
Query: 267 QDIENGIASIDWNRKTIGEFF----DWDLLAARSIWAFGPNKQVP 389
+DIENG+ SIDWNRK +G+FF DWDLLAARSIWAFGP+KQ P
Sbjct: 58 EDIENGVVSIDWNRKQLGDFFRTKYDWDLLAARSIWAFGPDKQGP 102
Score = 30.4 bits (67), Expect(2) = 8e-32
Identities = 16/22 (72%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = +1
Query: 385 FQWGAR-GAL*YKPIGNVKFKI 447
FQWGAR G L +PI NVKFKI
Sbjct: 130 FQWGAREGPLCDEPIRNVKFKI 151