BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00001240
         (499 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003572901.1| PREDICTED: 60S ribosomal protein L39-like [B...   115   5e-24
emb|CBI25619.3| unnamed protein product [Vitis vinifera]              112   2e-23
emb|CBI25617.3| unnamed protein product [Vitis vinifera]              112   2e-23
ref|XP_002523523.1| ribosomal protein L39e, putative [Ricinus co...   112   2e-23
ref|XP_002869300.1| 60S ribosomal protein L39 [Arabidopsis lyrat...   111   5e-23

>ref|XP_003572901.1| PREDICTED: 60S ribosomal protein L39-like [Brachypodium distachyon]
          Length = 97

 Score =  115 bits (287), Expect = 5e-24
 Identities = 55/74 (74%), Positives = 60/74 (81%)
 Frame = +2

Query: 29  SD*GFLTLSKPSAHPRTAPQAFTMPSHKSFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRY 208
           +D GFL L +     R    A TMPSHK+F IK+KLAKKMRQNRPIP+WIRMRTDNTIRY
Sbjct: 24  TDLGFLRLRRRRRRRRVFVSAATMPSHKTFRIKQKLAKKMRQNRPIPYWIRMRTDNTIRY 83

Query: 209 NAKRRHWRRTKLGF 250
           NAKRRHWRRTKLGF
Sbjct: 84  NAKRRHWRRTKLGF 97


>emb|CBI25619.3| unnamed protein product [Vitis vinifera]
          Length = 72

 Score =  112 bits (281), Expect = 2e-23
 Identities = 52/59 (88%), Positives = 54/59 (91%)
 Frame = +2

Query: 74  RTAPQAFTMPSHKSFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 250
           R A +   MPSHK+FMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 14  RRARKISKMPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 72


>emb|CBI25617.3| unnamed protein product [Vitis vinifera]
          Length = 70

 Score =  112 bits (281), Expect = 2e-23
 Identities = 52/59 (88%), Positives = 54/59 (91%)
 Frame = +2

Query: 74  RTAPQAFTMPSHKSFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 250
           R A +   MPSHK+FMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 12  RRARKISKMPSHKTFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 70


>ref|XP_002523523.1| ribosomal protein L39e, putative [Ricinus communis]
           gi|223537230|gb|EEF38862.1| ribosomal protein L39e,
           putative [Ricinus communis]
          Length = 67

 Score =  112 bits (281), Expect = 2e-23
 Identities = 52/60 (86%), Positives = 54/60 (90%)
 Frame = +2

Query: 71  PRTAPQAFTMPSHKSFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 250
           P  A Q   MPSHK+F+IKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF
Sbjct: 8   PLEALQVAKMPSHKTFIIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 67


>ref|XP_002869300.1| 60S ribosomal protein L39 [Arabidopsis lyrata subsp. lyrata]
           gi|297821901|ref|XP_002878833.1| 60S ribosomal protein
           L39 [Arabidopsis lyrata subsp. lyrata]
           gi|297315136|gb|EFH45559.1| 60S ribosomal protein L39
           [Arabidopsis lyrata subsp. lyrata]
           gi|297324672|gb|EFH55092.1| 60S ribosomal protein L39
           [Arabidopsis lyrata subsp. lyrata]
          Length = 51

 Score =  111 bits (278), Expect = 5e-23
 Identities = 50/51 (98%), Positives = 51/51 (100%)
 Frame = +2

Query: 98  MPSHKSFMIKKKLAKKMRQNRPIPHWIRMRTDNTIRYNAKRRHWRRTKLGF 250
           MPSHKSFMIKKKLAKKMRQNRPIPHWIR+RTDNTIRYNAKRRHWRRTKLGF
Sbjct: 1   MPSHKSFMIKKKLAKKMRQNRPIPHWIRLRTDNTIRYNAKRRHWRRTKLGF 51