BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00001195
         (1038 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002534039.1| pentatricopeptide repeat-containing protein,...   145   2e-32
ref|XP_004142304.1| PREDICTED: putative pentatricopeptide repeat...   144   5e-32
ref|XP_003555199.1| PREDICTED: putative pentatricopeptide repeat...   142   1e-31
ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat...   142   1e-31
emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]   142   1e-31

>ref|XP_002534039.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223525946|gb|EEF28343.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 634

 Score =  145 bits (365), Expect = 2e-32
 Identities = 66/128 (51%), Positives = 89/128 (69%)
 Frame = -1

Query: 1038 RPDDALVLWNEMREKGCNPNRIAYMALIHGLCKCSKSDMGHIYFKEMKEIEMRPDPYVYV 859
            RPDDA++LWNEMR +GC PNR+A+M  IHGLCKC K +   I+F EM+E EM PD YVY+
Sbjct: 491  RPDDAVMLWNEMRRRGCRPNRVAFMGFIHGLCKCDKPEAALIHFHEMEEEEMEPDTYVYI 550

Query: 858  ALISGSISNGNLLVALEIMKEMVQNKQFPVPSDNNYCLMIDAVSKLSENPTTSLDVKNLT 679
            +L+S  ++  N  +A EI+K+MV  + FP P D N  ++ DA+ KLS++  TS  VK+L 
Sbjct: 551  SLVSAFVNISNFPMAFEILKKMVDRRNFPDPLDKNCIIIRDAILKLSKDARTSSSVKSLI 610

Query: 678  LGGGIPAI 655
              G IP I
Sbjct: 611  ASGSIPTI 618


>ref|XP_004142304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g08310, mitochondrial-like [Cucumis sativus]
            gi|449510601|ref|XP_004163711.1| PREDICTED: putative
            pentatricopeptide repeat-containing protein At5g08310,
            mitochondrial-like [Cucumis sativus]
          Length = 849

 Score =  144 bits (362), Expect = 5e-32
 Identities = 68/128 (53%), Positives = 87/128 (67%)
 Frame = -1

Query: 1038 RPDDALVLWNEMREKGCNPNRIAYMALIHGLCKCSKSDMGHIYFKEMKEIEMRPDPYVYV 859
            RPDDA +LWNEM+EKGC+PNRI YMA++HGLCKC K D   +Y+  M+E EM+PD YV V
Sbjct: 715  RPDDAKILWNEMQEKGCSPNRITYMAIVHGLCKCGKPDEALVYYHSMEEKEMKPDSYVSV 774

Query: 858  ALISGSISNGNLLVALEIMKEMVQNKQFPVPSDNNYCLMIDAVSKLSENPTTSLDVKNLT 679
            ALI   IS  N  +A  I+KE ++    P P+D NY  + DA+ KLS++  T L+VK L 
Sbjct: 775  ALIDAFISKHNFSMAFNILKETIEKGNIPDPTDKNYVTIKDAIFKLSKDEQTGLEVKALI 834

Query: 678  LGGGIPAI 655
              G IP I
Sbjct: 835  EKGRIPTI 842


>ref|XP_003555199.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g08310, mitochondrial-like [Glycine max]
          Length = 942

 Score =  142 bits (358), Expect = 1e-31
 Identities = 67/144 (46%), Positives = 98/144 (68%)
 Frame = -1

Query: 1038 RPDDALVLWNEMREKGCNPNRIAYMALIHGLCKCSKSDMGHIYFKEMKEIEMRPDPYVYV 859
            RPDDAL++WNEM  KGC PN+IA+MALI+GLCKC +      Y +EM++ +M+PD ++Y+
Sbjct: 692  RPDDALLVWNEMERKGCFPNQIAFMALIYGLCKCCRPTTALHYLREMEQKDMKPDSFIYI 751

Query: 858  ALISGSISNGNLLVALEIMKEMVQNKQFPVPSDNNYCLMIDAVSKLSENPTTSLDVKNLT 679
            ALIS  +S+ +L  A EI KEMV +  FP   D NY +++DA+ K S++  TS  ++ L 
Sbjct: 752  ALISSFLSDMDLASAFEIFKEMVYSGYFPESHDKNYSIVMDAIDKFSKDHRTSSGIQVLM 811

Query: 678  LGGGIPAICSVSEQGGIDGLDPNG 607
              G +P  C+V  +G  +GLD +G
Sbjct: 812  EEGKLPTHCAVKSKGFKEGLDDDG 835


>ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g08310, mitochondrial [Vitis vinifera]
            gi|296085293|emb|CBI29025.3| unnamed protein product
            [Vitis vinifera]
          Length = 854

 Score =  142 bits (358), Expect = 1e-31
 Identities = 75/139 (53%), Positives = 95/139 (68%)
 Frame = -1

Query: 1038 RPDDALVLWNEMREKGCNPNRIAYMALIHGLCKCSKSDMGHIYFKEMKEIEMRPDPYVYV 859
            RPDDA+ LWNEMR KGC+PNRI+++ALIHGLCKC   D   +YF+EM E E  PD  VYV
Sbjct: 717  RPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALLYFREMGERE-TPDTIVYV 775

Query: 858  ALISGSISNGNLLVALEIMKEMVQNKQFPVPSDNNYCLMIDAVSKLSENPTTSLDVKNLT 679
            ALI+  ISN N  +A EI+KEMV   +FP P D N   + DA+ +L+E+ +TS +VKNL 
Sbjct: 776  ALITSFISNKNPTLAFEILKEMVAKGKFPDPLDKNDLPLRDAILELAEDASTSSNVKNLI 835

Query: 678  LGGGIPAICSVSEQGGIDG 622
              G IP I  +S+ G   G
Sbjct: 836  AEGRIPTIVCLSDVGSEGG 854


>emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
          Length = 814

 Score =  142 bits (358), Expect = 1e-31
 Identities = 75/139 (53%), Positives = 95/139 (68%)
 Frame = -1

Query: 1038 RPDDALVLWNEMREKGCNPNRIAYMALIHGLCKCSKSDMGHIYFKEMKEIEMRPDPYVYV 859
            RPDDA+ LWNEMR KGC+PNRI+++ALIHGLCKC   D   +YF+EM E E  PD  VYV
Sbjct: 677  RPDDAIHLWNEMRGKGCSPNRISFIALIHGLCKCGWPDAALLYFREMGERE-TPDTIVYV 735

Query: 858  ALISGSISNGNLLVALEIMKEMVQNKQFPVPSDNNYCLMIDAVSKLSENPTTSLDVKNLT 679
            ALI+  ISN N  +A EI+KEMV   +FP P D N   + DA+ +L+E+ +TS +VKNL 
Sbjct: 736  ALITSFISNKNPTLAFEILKEMVAKGKFPDPLDKNDLPLRDAILELAEDASTSSNVKNLI 795

Query: 678  LGGGIPAICSVSEQGGIDG 622
              G IP I  +S+ G   G
Sbjct: 796  AEGRIPTIVCLSDVGSEGG 814