BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00001163
         (1714 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003550974.1| PREDICTED: pentatricopeptide repeat-containi...   482   e-133
ref|XP_002525278.1| GTP binding protein, putative [Ricinus commu...   479   e-132
emb|CAN83934.1| hypothetical protein VITISV_035768 [Vitis vinifera]   474   e-131
ref|XP_003608531.1| Pentatricopeptide repeat-containing protein ...   468   e-129
ref|XP_004141982.1| PREDICTED: pentatricopeptide repeat-containi...   447   e-123

>ref|XP_003550974.1| PREDICTED: pentatricopeptide repeat-containing protein At5g67570,
            chloroplastic-like [Glycine max]
          Length = 865

 Score =  482 bits (1241), Expect = e-133
 Identities = 259/496 (52%), Positives = 337/496 (67%), Gaps = 2/496 (0%)
 Frame = +3

Query: 3    VMLRSGKYELVHKFFEKMRKSGEVPKALTYKVLVRAFWEEGKVNEAVEAVRDMERRGVVG 182
            VML SG Y+LVH+FF KM++SGEVPKALTYKVLV+ FW+EGKVNEAV+AVRDMERRGV+G
Sbjct: 368  VMLESGNYDLVHEFFGKMKRSGEVPKALTYKVLVKTFWKEGKVNEAVKAVRDMERRGVIG 427

Query: 183  TASVYYELACCLCRNGRWKDAMLEVEKLKKLRLTKPLEVAFTGMIMSCMDGGHVGDCISV 362
            TASVYYELACCLC NGRW+DA+LEV+ ++ L   KPLEV FTGMI S MDGGH+ DCI +
Sbjct: 428  TASVYYELACCLCNNGRWQDAILEVDNIRSLPHAKPLEVTFTGMIKSSMDGGHINDCICI 487

Query: 363  FEQMDNHCSPNIGTINAMLKVYGRNDMFAKAQEMFERTKRMESGFSTVTCSGGSFLTPDA 542
            FE M  HC PNIG IN MLKVYG+NDMF+KA+ +FE  K  +S F      G S + PD 
Sbjct: 488  FEYMKEHCVPNIGAINTMLKVYGQNDMFSKAKVLFEEVKVAKSEFYATPEGGYSSVVPDV 547

Query: 543  FTYSSILEASVSAQQWEYFEYVYKEMALGGYQLDQNKHAWLLVEASKAGKIHLLEHAFDM 722
            ++Y+S+LEAS +AQQWEYFE+VY+EM + GYQLDQ+KH  LLV+AS+AGK+HLLEHAFDM
Sbjct: 548  YSYNSMLEASATAQQWEYFEHVYREMIVSGYQLDQDKHLSLLVKASRAGKLHLLEHAFDM 607

Query: 723  ILEVGEIPHPTFFTEMVCQASADHNYERAVILLNSMAHASYQVSEKQWTDIFMESRDRIG 902
            ILE GEIPH  FF E+V QA A HNYERAVIL+N+MA+A ++V+EKQWT++F ES DRI 
Sbjct: 608  ILEAGEIPHHLFFFELVIQAIAQHNYERAVILINTMAYAPFRVTEKQWTNLFKESEDRIS 667

Query: 903  KDGLRHLFDELCRSDVVTEATITNLLKSLQSICGLTSPTDLTAFSSLTVIRSPGDDSHDI 1082
             + L  L D L   D+V+E T++NL +SL  +CGL +  + ++        S    +  I
Sbjct: 668  LENLERLLDALGNCDIVSELTVSNLTRSLHVLCGLGTSRNFSSIIPFGSENSVNGLNEGI 727

Query: 1083 IMDGESFEQMKASPTEKVDGNPNSKNNGGVVKSDVFPVYQTNSNAEDCVAMAERSSSICG 1262
              DG   +  +    E V+    SKN+  V      P  +T + + D V   + S  +  
Sbjct: 728  DDDGNVPKISRRMMIEGVE----SKNDILVASYHTEP--ETIAFSRDQVNGGDNSDVMVF 781

Query: 1263 ISDNS-MDFGSTVPSGCVDCSSASPVLGVNSQDSIEETLDLLTSHVDGSSGP-DLPPASE 1436
               NS ++ G ++ +  ++C+  +  L  +S +  EE  D  +S  D   G  D P A E
Sbjct: 782  RPQNSYIEDGKSLYADSLECTD-NLALDKSSDELDEELWDDGSSEDDDGEGVIDKPSAYE 840

Query: 1437 ILKRWRESRNKDGVFL 1484
            IL+ W+E R +DG  L
Sbjct: 841  ILEVWKEMREEDGNLL 856


>ref|XP_002525278.1| GTP binding protein, putative [Ricinus communis]
            gi|223535436|gb|EEF37106.1| GTP binding protein, putative
            [Ricinus communis]
          Length = 1010

 Score =  479 bits (1232), Expect = e-132
 Identities = 272/520 (52%), Positives = 332/520 (63%), Gaps = 15/520 (2%)
 Frame = +3

Query: 3    VMLRSGKYELVHKFFEKMRKSGEVPKALTYKVLVRAFWEEGKVNEAVEAVRDMERRGVVG 182
            VML SGKY+LVH+ F KM +SGE PKALTYKVLVRAFWEEGKVNEA+EAVRDME RGVVG
Sbjct: 515  VMLNSGKYDLVHELFRKMNRSGEAPKALTYKVLVRAFWEEGKVNEAMEAVRDMENRGVVG 574

Query: 183  TASVYYELACCLCRNGRWKDAMLEVEKLKKLRLTKPLEVAFTGMIMSCMDGGHVGDCISV 362
            TAS+YYELACCLC  G W+DAMLEV+K+K LR +KPLEV FTG+IMS +DGGHV DCIS+
Sbjct: 575  TASLYYELACCLCYYGMWQDAMLEVKKMKNLRHSKPLEVTFTGLIMSSLDGGHVSDCISI 634

Query: 363  FEQMDNHCSPNIGTINAMLKVYGRNDMFAKAQEMFERTKRMESGFSTVTCSGGSFLTPDA 542
            FE M  +C PNIGTIN MLKVYGRND+F+KA+E+F   K         T + G++L PD 
Sbjct: 635  FEYMKAYCVPNIGTINIMLKVYGRNDLFSKAKELFGEIKG--------TNNDGTYLVPDE 686

Query: 543  FTYSSILEASVSAQQWEYFEYVYKEMALGGYQLDQNKHAWLLVEASKAGKIHLLEHAFDM 722
            FTYSS+LEAS SA QWEYFE VYKEM   GYQLDQ KHA LLVEAS+ GK HLLEHAFD 
Sbjct: 687  FTYSSMLEASASALQWEYFELVYKEMTFCGYQLDQKKHASLLVEASRVGKYHLLEHAFDA 746

Query: 723  ILEVGEIPHPTFFTEMVCQASADHNYERAVILLNSMAHASYQVSEKQWTDIFMESRDRIG 902
             LE GEIPH   FTEMV QA+A  NYERAV+L+N++A A +++SEKQW D+F ++ D+I 
Sbjct: 747  ALEAGEIPHHLLFTEMVFQATAQQNYERAVVLVNTLALAPFKISEKQWIDLFQKNGDKIT 806

Query: 903  KDGLRHLFDELCRSDVVTEATITNLLKSLQSICGLTSPTDLTAFSSLTVIRSPGDDSHDI 1082
            +DGL  L D L  SDV +E T+ NL ++L S+CG      L+  +SL +     D ++  
Sbjct: 807  QDGLEKLLDALRSSDVASEPTVANLSRTLHSLCGRGRSEYLSGSTSLGI-----DVTNSS 861

Query: 1083 IMDGESFEQMKASPTEKVDGNPNSKNNGGVVKSDV----FPVYQTNSNAEDCVAMAERSS 1250
             +D  S + M        D  P    +  + K+D+      V ++N+  E      E SS
Sbjct: 862  YLDSGSRKIMG-------DKGPEMHEDTLIDKTDIAYGDLSVTRSNTGGEGSDDTDEASS 914

Query: 1251 S----------ICGISDNSMDFGSTVPSGC-VDCSSASPVLGVNSQDSIEETLDLLTSHV 1397
            S          I  I  N   FG    SG   DC            D  E    +  + V
Sbjct: 915  SPRNYSTDRDGIASICTNVKIFGDDEASGASTDC-----------LDFDEMEYGIPINQV 963

Query: 1398 DGSSGPDLPPASEILKRWRESRNKDGVFLPFK*SPSEDKS 1517
            D S G  LP A EIL  W+ESR K  +F PF+   +E  S
Sbjct: 964  DDSCGTKLPSADEILDIWKESR-KGRLFFPFQLHKNEPTS 1002


>emb|CAN83934.1| hypothetical protein VITISV_035768 [Vitis vinifera]
          Length = 615

 Score =  474 bits (1219), Expect = e-131
 Identities = 262/470 (55%), Positives = 317/470 (67%), Gaps = 11/470 (2%)
 Frame = +3

Query: 96   VLVRAFWEEGKVNEAVEAVRDMERRGVVGTASVYYELACCLCRNGRWKDAMLEVEKLKKL 275
            VLVRAFWEEGKVNEAVE VRDMERRGVVG ASVYYELACCLC NGRW+DA++EVEKLKK 
Sbjct: 12   VLVRAFWEEGKVNEAVEVVRDMERRGVVGIASVYYELACCLCNNGRWQDAIVEVEKLKKR 71

Query: 276  RLTKPLEVAFTGMIMSCMDGGHVGDCISVFEQMDNHCSPNIGTINAMLKVYGRNDMFAKA 455
              +KPLEV FTGMI S MDGGH+ DC+S+FE M  HCSPNIGTINAMLKVYGRNDMF+KA
Sbjct: 72   PHSKPLEVTFTGMITSSMDGGHLDDCLSIFEHMKYHCSPNIGTINAMLKVYGRNDMFSKA 131

Query: 456  QEMFERTKRMESGFSTVTCSGGSFLTPDAFTYSSILEASVSAQQWEYFEYVYKEMALGGY 635
            +E+FE TKR     +T    G   L PD +TYSS+LEAS SA QWE+FEYVYKEM L GY
Sbjct: 132  KELFEETKRSTFASNTCMDDGSISLVPDLYTYSSMLEASASAHQWEFFEYVYKEMTLSGY 191

Query: 636  QLDQNKHAWLLVEASKAGKIHLLEHAFDMILEVGEIPHPTFFTEMVCQASADHNYERAVI 815
            QLDQ+KHA LL +AS+AGK HLLEHAFD ILE GEIPHP+ FTEM+CQA+A HNYERAV 
Sbjct: 192  QLDQSKHALLLGKASRAGKWHLLEHAFDTILEAGEIPHPSIFTEMICQATAQHNYERAVT 251

Query: 816  LLNSMAHASYQVSEKQWTDIFMESRDRIGKDGLRHLFDELCRSDVVTEATITNLLKSLQS 995
            L+N+MAHA + VSEKQWTD+F+ + DRI +  L  L D L   DV  EAT++NL KSLQS
Sbjct: 252  LINAMAHAPFVVSEKQWTDLFV-TDDRISRVNLEKLLDSLHNCDVAEEATVSNLYKSLQS 310

Query: 996  ICGLTSPTDLT--AFSSLTVIRSPGDDSHDIIMDGES--FEQMKA-------SPTEKVDG 1142
            +CG  +  D +  AF    +IR+P + +   + D +   F++  A       SP E    
Sbjct: 311  LCGSGTSMDQSSVAFGDEAMIRTPLNGNSGELDDNKKVFFQKFSADARGSDLSPHE---- 366

Query: 1143 NPNSKNNGGVVKSDVFPVYQTNSNAEDCVAMAERSSSICGISDNSMDFGSTVPSGCVDCS 1322
            NP  KN+   V  D+F V  T S  ED     E  S     + N  +  S  P+      
Sbjct: 367  NPPVKNSD--VTFDIFSVNLTRSEEEDDDTDGEAISEAFNYACNGDEVASNEPN------ 418

Query: 1323 SASPVLGVNSQDSIEETLDLLTSHVDGSSGPDLPPASEILKRWRESRNKD 1472
                 L  NS+   +  L++     D S G +LP A+EIL+ W++SR +D
Sbjct: 419  ----TLDGNSEGINKIELNMRAKE-DDSHGSNLPSANEILETWKKSRERD 463


>ref|XP_003608531.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355509586|gb|AES90728.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 877

 Score =  468 bits (1204), Expect = e-129
 Identities = 254/499 (50%), Positives = 332/499 (66%), Gaps = 9/499 (1%)
 Frame = +3

Query: 3    VMLRSGKYELVHKFFEKMRKSGEVPKALTYKVLVRAFWEEGKVNEAVEAVRDMERRGVVG 182
            VML+SG Y+LVH+ FEKM+++GEVP+ALTYKV+VR FW+EGKV+EAV+AVRDMERRGV+G
Sbjct: 390  VMLQSGNYDLVHELFEKMQRNGEVPEALTYKVMVRTFWKEGKVDEAVKAVRDMERRGVMG 449

Query: 183  TASVYYELACCLCRNGRWKDAMLEVEKLKKLRLTKPLEVAFTGMIMSCMDGGHVGDCISV 362
            TASVYYELACCLC  GRW+DA LEVEK+K+L   KPLEV FTGMI S MDGGH+ DCI +
Sbjct: 450  TASVYYELACCLCNCGRWQDATLEVEKIKRLPHAKPLEVTFTGMIRSSMDGGHIDDCICI 509

Query: 363  FEQMDNHCSPNIGTINAMLKVYGRNDMFAKAQEMFERTKRMESGFSTVTCSGGSFLTPDA 542
            FE M +HC+PN+GT+N MLKVY +NDMF+ A+ +FE  K  +S            L PDA
Sbjct: 510  FEYMQDHCAPNVGTVNTMLKVYSQNDMFSTAKVLFEEVKVAKSD-----------LRPDA 558

Query: 543  FTYSSILEASVSAQQWEYFEYVYKEMALGGYQLDQNKHAWLLVEASKAGKIHLLEHAFDM 722
            +TY+ +LEAS    QWEYFE+VYKEM L GY LDQNKH  LLV+AS+AGK+HLLEHAFDM
Sbjct: 559  YTYNLMLEASSRGHQWEYFEHVYKEMILSGYHLDQNKHLPLLVKASRAGKLHLLEHAFDM 618

Query: 723  ILEVGEIPHPTFFTEMVCQASADHNYERAVILLNSMAHASYQVSEKQWTDIFMESRDRIG 902
            +LE GEIPH  FF E+V QA A HNYERA+ILL++MAHA Y+V+EKQWT++F E+ DRI 
Sbjct: 619  VLEAGEIPHHLFFFELVIQAIAQHNYERAIILLSTMAHAPYRVTEKQWTELFKENEDRIN 678

Query: 903  KDGLRHLFDELCRSDVVTEATITNLLKSLQSICGLTSPTDLTAFSSLTVIRSPGDDS-HD 1079
             + L+ L D+L   +VV+EATI+NL +SL  +CGL S  ++   SS+   RS   D  ++
Sbjct: 679  HENLKRLLDDLGNCNVVSEATISNLSRSLHDLCGLGSSRNI---SSIIPFRSENVDCLNE 735

Query: 1080 IIMDGESFEQMKASPTEKVDGNPNSKN---NGGVVKSDVFPVYQTNSNAEDCVAMAERSS 1250
             I  GE+ +    S    ++G  +  +    G   + D+F       N +    +     
Sbjct: 736  TINGGENGKAPNFSGRMMIEGAESGNDILFGGDQAEPDMF-----TFNDDQVDRVNNNDV 790

Query: 1251 SICGISDNSMDFGSTVPSGCVDCSSASPVLGVN-SQDSIEETLDLLTSHVDGSSGP---- 1415
             +C   +  ++  S   S CVD       L ++ S D  E+ L    S+ D   G     
Sbjct: 791  VVCRPQNRVIEDKS---SFCVDRPEFLDRLTLDKSSDDSEDELSDDESYEDDDDGDKEVI 847

Query: 1416 DLPPASEILKRWRESRNKD 1472
            D P A +IL+ W+E R +D
Sbjct: 848  DKPSAYQILEAWKEMREED 866


>ref|XP_004141982.1| PREDICTED: pentatricopeptide repeat-containing protein At5g67570,
            chloroplastic-like [Cucumis sativus]
            gi|449499902|ref|XP_004160949.1| PREDICTED:
            pentatricopeptide repeat-containing protein At5g67570,
            chloroplastic-like [Cucumis sativus]
          Length = 860

 Score =  447 bits (1149), Expect = e-123
 Identities = 244/494 (49%), Positives = 322/494 (65%)
 Frame = +3

Query: 3    VMLRSGKYELVHKFFEKMRKSGEVPKALTYKVLVRAFWEEGKVNEAVEAVRDMERRGVVG 182
            VML+SGKYE +H  F KM+K+G+  KA TY+VLV+AFWEEG VN A+EAVRDME+RGVVG
Sbjct: 387  VMLKSGKYEQLHNLFTKMKKNGQTLKANTYRVLVKAFWEEGNVNGAIEAVRDMEQRGVVG 446

Query: 183  TASVYYELACCLCRNGRWKDAMLEVEKLKKLRLTKPLEVAFTGMIMSCMDGGHVGDCISV 362
            +ASVYYELACCLC NG+W+DA++EVEK+K L   KPL V FTGMI S  +GGH+ DCIS+
Sbjct: 447  SASVYYELACCLCYNGKWQDALVEVEKMKTLSHMKPLVVTFTGMISSSFNGGHIDDCISI 506

Query: 363  FEQMDNHCSPNIGTINAMLKVYGRNDMFAKAQEMFERTKRMESGFSTVTCSGGSFLTPDA 542
            FE M   C+PNIGTIN MLKVYGRNDM++KA+++FE  KR     S+   S    L PD 
Sbjct: 507  FEYMKQICAPNIGTINTMLKVYGRNDMYSKAKDLFEEIKRKAD--SSSHDSAVPSLVPDE 564

Query: 543  FTYSSILEASVSAQQWEYFEYVYKEMALGGYQLDQNKHAWLLVEASKAGKIHLLEHAFDM 722
            +TY+S+LEA+ S+ QWEYFE VY+EMAL GYQLDQ+KHA LLVEASKAGK +LL+HAFD 
Sbjct: 565  YTYASMLEAAASSLQWEYFESVYREMALSGYQLDQSKHALLLVEASKAGKWYLLDHAFDT 624

Query: 723  ILEVGEIPHPTFFTEMVCQASADHNYERAVILLNSMAHASYQVSEKQWTDIFMESRDRIG 902
            ILE G+IPHP  FTEM+ Q +   NYE+AV L+ +M +A +QVSE+QWT++F  + DRI 
Sbjct: 625  ILEAGQIPHPLLFTEMILQLTTQDNYEQAVTLVRTMGYAPFQVSERQWTELFEGNTDRIR 684

Query: 903  KDGLRHLFDELCRSDVVTEATITNLLKSLQSICGLTSPTDLTAFSSLTVIRSPGDDSHDI 1082
            ++ L+ L   L   D  +EAT++NL +SLQS+C    P + +   S+       D+    
Sbjct: 685  RNNLKQLLHALGDCD-ASEATVSNLSRSLQSLCKFDIPENTS--QSVACDHDATDELQ-- 739

Query: 1083 IMDGESFEQMKASPTEKVDGNPNSKNNGGVVKSDVFPVYQTNSNAEDCVAMAERSSSICG 1262
            + D E+ E MK  P E                 D+ PV   + N +   + ++ S     
Sbjct: 740  LPDSENMENMKLHPDED-------------ESLDIIPVDHASLNMK-VNSESKMSPWSVS 785

Query: 1263 ISDNSMDFGSTVPSGCVDCSSASPVLGVNSQDSIEETLDLLTSHVDGSSGPDLPPASEIL 1442
            ISD ++  G     G  +  S   + G +  D  EE L+ L    D +   +LP  +EIL
Sbjct: 786  ISDGALGTGQ-FSDGSNNVHSPFDLCGESEDD--EEELNTLLDEFDDAYDSNLPAVNEIL 842

Query: 1443 KRWRESRNKDGVFL 1484
            + W+E R  DG+FL
Sbjct: 843  ETWKEERKADGLFL 856