BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00001153
         (3342 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002519191.1| pentatricopeptide repeat-containing protein,...   787   0.0  
ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat...   735   0.0  
ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pen...   716   0.0  
ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat...   670   0.0  
ref|NP_188314.1| pentatricopeptide repeat-containing protein [Ar...   666   0.0  

>ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223541506|gb|EEF43055.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 719

 Score =  787 bits (2032), Expect = 0.0
 Identities = 376/624 (60%), Positives = 486/624 (77%)
 Frame = -1

Query: 3219 TGKSPFNLSNHRILPNVHKLPVNVIDHSYLSEILARNDWFYLLNHEFKAKRTSLNQQYVV 3040
            T  +   +SN+ I  N +  P   IDH Y S IL+R+DWF LLNHEFKAKR +LN   V 
Sbjct: 61   TNPNSLKISNNPISANKYSKP---IDHHYFSRILSRHDWFLLLNHEFKAKRITLNSHSVA 117

Query: 3039 RVLQNEESPLSCVRFYVWVSNVEDRLAKDQLVQRVLGNRLYRNGPVVLSADLIKEVVGFK 2860
             VLQN+E+PL  ++FY+WVSN++   AKDQ V+ VL N LYR GPVVLS +L+K++    
Sbjct: 118  SVLQNQENPLYPLKFYIWVSNMDPLFAKDQSVKGVLANCLYRKGPVVLSVELLKDIKASG 177

Query: 2859 CRITEEIVCVMIGSWGRLGLAKYCTEVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAY 2680
             RI EE++C++IGSWGRLGLAKYC E+FGQIS+LG+SP+TRLYNAVIDALVKSNSLDLAY
Sbjct: 178  YRINEELLCILIGSWGRLGLAKYCDEIFGQISFLGISPSTRLYNAVIDALVKSNSLDLAY 237

Query: 2679 FKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGF 2500
             KFQQM ADNC PDRFTYNILIHGVC+ G+VDEALRL+KQMEG GYSPNVFTYTILIDGF
Sbjct: 238  LKFQQMSADNCKPDRFTYNILIHGVCRSGVVDEALRLVKQMEGLGYSPNVFTYTILIDGF 297

Query: 2499 CNAKRVDEAFQLLETMREKNVVPSEATYRSLVHGVFRCLPLREAYDLFLSFVGREPIMSK 2320
             NAK+VDEAF++LETM+ + V PSEAT RS +HGVFRC+   +A++L + F+ REP++ +
Sbjct: 298  FNAKKVDEAFRVLETMKARKVSPSEATIRSFIHGVFRCVAPNKAFELAIEFIEREPVLQR 357

Query: 2319 HACDTILICLAKNSLSREGADILRMVGKKGYIPDSATFSILMVCFTKDLNLHETCNIVNG 2140
             ACDT+L CL+  +++RE   +L+  GK G+ PDSATF+I M C  K  +L+E CNI++ 
Sbjct: 358  LACDTLLCCLSSKNMAREAGALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDR 417

Query: 2139 FTEQGGMLGFNTYIALIKALFKVGMVEEGNQYLDEMVHDGLVSSVVSYNMLIDMFCQAEM 1960
            F EQG   GF+TY+ALIKAL+  G V EGN Y ++MV DGL+ +V SYNM+ID FC+  M
Sbjct: 418  FVEQGMKFGFSTYLALIKALYMAGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSM 477

Query: 1959 MEKALTTLMEMHRRGVAPNLVTYNTIINGYSKAGQISRVQEILKMLLKHGFKPDKYTFSS 1780
            M+KA  T  EM  +G+ PNLVT+NT+I+GY K G+I + +++L MLL+HGFKPD +TFSS
Sbjct: 478  MDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSS 537

Query: 1779 IIDGLCRENRLEDAFNCFSEMVEWNVIPNVVTYNILIRCLCVVGNVGKSLQLLRQMKANG 1600
            IIDGLCR  ++EDA  CFSEMV W + PN VTYNILI  LC++G+V +S++LLR+M+ +G
Sbjct: 538  IIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQTDG 597

Query: 1599 ISPDTFSFNALIVSLCKMNKIESAQRLFNSMLRLGLSPDSYSCNAFIKKMCESGRIDEAK 1420
            I+PD FSFNALI S C+M K+E A++LF+SML LGL PD+Y+  AFIK  C+SGR +EAK
Sbjct: 598  INPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFCQSGRFNEAK 657

Query: 1419 KMVLTMEANGHAPDPYAYSLIVDS 1348
            ++ L+MEANG  PD +  ++I+D+
Sbjct: 658  ELFLSMEANGCMPDSFTCNIILDA 681



 Score =  107 bits (268), Expect = 2e-20
 Identities = 87/362 (24%), Positives = 148/362 (40%)
 Frame = -1

Query: 2778 FGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCK 2599
            FG+I   G  P +  +N  ++ L+K   L+       +           TY  LI  +  
Sbjct: 383  FGKI---GHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFGFSTYLALIKALYM 439

Query: 2598 IGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVVPSEAT 2419
             G V E      QM   G   NV +Y ++ID FC    +D+A    + M+ K + P+  T
Sbjct: 440  AGKVTEGNHYFNQMVKDGLLCNVCSYNMVIDCFCKTSMMDKATNTFKEMQYKGIPPNLVT 499

Query: 2418 YRSLVHGVFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREGADILRMVG 2239
            + +L+ G                            C    IC ++        D+L M+ 
Sbjct: 500  FNTLIDGY---------------------------CKGGEICKSR--------DLLVMLL 524

Query: 2238 KKGYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEQGGMLGFNTYIALIKALFKVGMVE 2059
            + G+ PD  TFS ++    +   + +     +     G      TY  LI +L  +G V 
Sbjct: 525  EHGFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVP 584

Query: 2058 EGNQYLDEMVHDGLVSSVVSYNMLIDMFCQAEMMEKALTTLMEMHRRGVAPNLVTYNTII 1879
               + L +M  DG+   V S+N LI  FC+   +E A      M   G+ P+  TY   I
Sbjct: 585  RSMKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFI 644

Query: 1878 NGYSKAGQISRVQEILKMLLKHGFKPDKYTFSSIIDGLCRENRLEDAFNCFSEMVEWNVI 1699
              + ++G+ +  +E+   +  +G  PD +T + I+D L ++++ E A        EW ++
Sbjct: 645  KVFCQSGRFNEAKELFLSMEANGCMPDSFTCNIILDALVKQDQFEAAQKIAKTCSEWGIL 704

Query: 1698 PN 1693
             N
Sbjct: 705  VN 706



 Score = 94.7 bits (234), Expect = 1e-16
 Identities = 53/185 (28%), Positives = 91/185 (49%)
 Frame = -1

Query: 2757 GLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEA 2578
            G  P    ++++ID L ++  ++ A   F +M      P+  TYNILIH +C IG V  +
Sbjct: 527  GFKPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRS 586

Query: 2577 LRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVVPSEATYRSLVHG 2398
            ++LL++M+  G +P+VF++  LI  FC   +V++A +L  +M    ++P   TY + +  
Sbjct: 587  MKLLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKV 646

Query: 2397 VFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREGADILRMVGKKGYIPD 2218
              +     EA +LFLS      +     C+ IL  L K         I +   + G + +
Sbjct: 647  FCQSGRFNEAKELFLSMEANGCMPDSFTCNIILDALVKQDQFEAAQKIAKTCSEWGILVN 706

Query: 2217 SATFS 2203
             A  S
Sbjct: 707  FAAIS 711



 Score = 84.3 bits (207), Expect = 2e-13
 Identities = 66/299 (22%), Positives = 119/299 (39%), Gaps = 7/299 (2%)
 Frame = -1

Query: 2985 VSNVEDRLAKDQL-----VQRVLGNRLYRNGPVVLSADLIKEVV--GFKCRITEEIVCVM 2827
            V N+ DR  +  +         L   LY  G V        ++V  G  C +      ++
Sbjct: 411  VCNILDRFVEQGMKFGFSTYLALIKALYMAGKVTEGNHYFNQMVKDGLLCNVCS--YNMV 468

Query: 2826 IGSWGRLGLAKYCTEVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNC 2647
            I  + +  +    T  F ++ Y G+ P    +N +ID   K   +  +      +     
Sbjct: 469  IDCFCKTSMMDKATNTFKEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGF 528

Query: 2646 VPDRFTYNILIHGVCKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQ 2467
             PD FT++ +I G+C+   +++AL    +M   G SPN  TY ILI   C    V  + +
Sbjct: 529  KPDIFTFSSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMK 588

Query: 2466 LLETMREKNVVPSEATYRSLVHGVFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLA 2287
            LL  M+   + P   ++ +L+    R   + +A  LF S +    I   +     +    
Sbjct: 589  LLRKMQTDGINPDVFSFNALIQSFCRMGKVEDAKKLFSSMLSLGLIPDNYTYVAFIKVFC 648

Query: 2286 KNSLSREGADILRMVGKKGYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEQGGMLGF 2110
            ++    E  ++   +   G +PDS T +I++    K         I    +E G ++ F
Sbjct: 649  QSGRFNEAKELFLSMEANGCMPDSFTCNIILDALVKQDQFEAAQKIAKTCSEWGILVNF 707


>ref|XP_004162218.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g16890, mitochondrial-like [Cucumis sativus]
          Length = 697

 Score =  735 bits (1898), Expect = 0.0
 Identities = 356/656 (54%), Positives = 483/656 (73%), Gaps = 4/656 (0%)
 Frame = -1

Query: 3303 TQKISIPYNRKKPISNDASKLTSFKAPVTGKSPFNLSNHRILPN-VHKLPVNVIDHSYLS 3127
            T K S   N + P   + S LT+   P+   S   LS    L +  H L +  ID SY+S
Sbjct: 41   TSKQSPFNNLEAPSRGNPSPLTT---PLKAPSSIQLSTPPSLADDKHSLSLKPIDRSYIS 97

Query: 3126 EILARNDWFYLLNHEFKAKRTSLNQQYVVRVLQNEESPLSCVRFYVWVSNVEDRLAKDQL 2947
            +IL   DWF LLNHEFKAKR  L+ Q+VV +LQN+++PLS +RFY+WVSNV+  L K QL
Sbjct: 98   KILLSKDWFLLLNHEFKAKRVVLSPQFVVSILQNQDNPLSAIRFYIWVSNVDPLLVKKQL 157

Query: 2946 VQRVLGNRLYRNGP---VVLSADLIKEVVGFKCRITEEIVCVMIGSWGRLGLAKYCTEVF 2776
            +Q VL   L+R GP   V+LS DL++++     ++TEE++C++ GSWGRLGLA YC EVF
Sbjct: 158  IQGVLVRNLHREGPDRPVLLSVDLLQQIKESGLKVTEELLCILFGSWGRLGLANYCVEVF 217

Query: 2775 GQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKI 2596
            GQI  LGL+PTTRLYNAV+DAL+KSNSLDLAY KFQQM + NCVPDRFTYNILIHGVC++
Sbjct: 218  GQIGLLGLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRL 277

Query: 2595 GIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVVPSEATY 2416
            G+VDEALRL+KQMEG GY PNVFTYTILIDGF NAKR  EAF++L+TM+E+NVVP+EAT 
Sbjct: 278  GVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGEAFKVLQTMKERNVVPNEATM 337

Query: 2415 RSLVHGVFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREGADILRMVGK 2236
            RSLVHGVFRC+   +A++L L FV R+  +++  CD IL CL+ NS++ E    L   GK
Sbjct: 338  RSLVHGVFRCIAPDKAFELLLEFVERKQGITQLVCDNILYCLSNNSMASEAVMFLIKTGK 397

Query: 2235 KGYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEQGGMLGFNTYIALIKALFKVGMVEE 2056
            +GY+P S+TF+I + C  K L+L  TC + +   + G   GF+TY+ LI+AL+K G +E 
Sbjct: 398  EGYVPSSSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEI 457

Query: 2055 GNQYLDEMVHDGLVSSVVSYNMLIDMFCQAEMMEKALTTLMEMHRRGVAPNLVTYNTIIN 1876
            GN+Y+D +++DGL+S++ SYNM+ID  C+ + M++A     ++H RG++PN+VTYNT+I 
Sbjct: 458  GNRYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIG 517

Query: 1875 GYSKAGQISRVQEILKMLLKHGFKPDKYTFSSIIDGLCRENRLEDAFNCFSEMVEWNVIP 1696
            G+ + G + + QE+L+MLL+  F+PD +TF+S+IDGLC+ ++ E+AF CF+EMVEW+V P
Sbjct: 518  GFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPP 577

Query: 1695 NVVTYNILIRCLCVVGNVGKSLQLLRQMKANGISPDTFSFNALIVSLCKMNKIESAQRLF 1516
            NV+TYNILI   C +G+V +S  LLRQMK +GI PDTFSFNALI      N+ + A++LF
Sbjct: 578  NVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLF 637

Query: 1515 NSMLRLGLSPDSYSCNAFIKKMCESGRIDEAKKMVLTMEANGHAPDPYAYSLIVDS 1348
            +SMLRLG+ PD+Y+  A IK +C+SGR D+A+++ L+M+ NG  PD Y  SL  D+
Sbjct: 638  DSMLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLSMKENGCTPDSYTCSLFSDT 693


>ref|XP_004134500.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
            repeat-containing protein At3g16890, mitochondrial-like
            [Cucumis sativus]
          Length = 688

 Score =  716 bits (1848), Expect = 0.0
 Identities = 350/656 (53%), Positives = 476/656 (72%), Gaps = 4/656 (0%)
 Frame = -1

Query: 3303 TQKISIPYNRKKPISNDASKLTSFKAPVTGKSPFNLSNHRILPN-VHKLPVNVIDHSYLS 3127
            T K S   N + P   + S LT+   P+   S   LS    L +  H L +  ID SY+S
Sbjct: 41   TSKQSPFNNLEAPSRGNPSPLTT---PLKAPSSIQLSTPPSLADDKHSLSLKPIDRSYIS 97

Query: 3126 EILARNDWFYLLNHEFKAKRTSLNQQYVVRVLQNEESPLSCVRFYVWVSNVEDRLAKDQL 2947
            +IL   DWF LLNHEFKAKR  L+ Q+VV +LQN+++PLS +RFY+WVSNV+  L K QL
Sbjct: 98   KILLSKDWFLLLNHEFKAKRVVLSPQFVVSILQNQDNPLSAIRFYIWVSNVDPLLVKKQL 157

Query: 2946 VQRVLGNRLYRNGP---VVLSADLIKEVVGFKCRITEEIVCVMIGSWGRLGLAKYCTEVF 2776
            +Q VL   L+R GP   V+LS DL++++     ++TEE++C++ GSWGRLGLA YC EVF
Sbjct: 158  IQGVLVRNLHREGPDRPVLLSVDLLQQIKESGLKVTEELLCILFGSWGRLGLANYCVEVF 217

Query: 2775 GQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKI 2596
            GQI  LGL+PTTRLYNAV+DAL+KSNSLDLAY KFQQM + NCVPDRFTYNILIHGVC++
Sbjct: 218  GQIGLLGLNPTTRLYNAVMDALIKSNSLDLAYLKFQQMSSHNCVPDRFTYNILIHGVCRL 277

Query: 2595 GIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVVPSEATY 2416
            G+VDEALRL+KQMEG GY PNVFTYTILIDGF NAKR  E F++L+TM+E+NVVP+EAT 
Sbjct: 278  GVVDEALRLMKQMEGLGYFPNVFTYTILIDGFFNAKRAGETFKVLQTMKERNVVPNEATM 337

Query: 2415 RSLVHGVFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREGADILRMVGK 2236
            RSLVHGVFRC+   +A++L L FV R+  +++  CD IL CL+ NS++ E          
Sbjct: 338  RSLVHGVFRCIAPDKAFELLLEFVERKQGITQLVCDNILYCLSNNSMASEAVM------- 390

Query: 2235 KGYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEQGGMLGFNTYIALIKALFKVGMVEE 2056
              + P S+TF+I + C  K L+L  TC + +   + G   GF+TY+ LI+AL+K G +E 
Sbjct: 391  --FXPSSSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEI 448

Query: 2055 GNQYLDEMVHDGLVSSVVSYNMLIDMFCQAEMMEKALTTLMEMHRRGVAPNLVTYNTIIN 1876
            GN+Y+D +++DGL+S++ SYNM+ID  C+ + M++A     ++H RG++PN+VTYNT+I 
Sbjct: 449  GNRYMDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIG 508

Query: 1875 GYSKAGQISRVQEILKMLLKHGFKPDKYTFSSIIDGLCRENRLEDAFNCFSEMVEWNVIP 1696
            G+ + G + + QE+L+MLL+  F+PD +TF+S+IDGLC+ ++ E+AF CF+EMVEW+V P
Sbjct: 509  GFCRNGNMDKAQELLEMLLESRFRPDIFTFNSLIDGLCQAHKHENAFGCFTEMVEWDVPP 568

Query: 1695 NVVTYNILIRCLCVVGNVGKSLQLLRQMKANGISPDTFSFNALIVSLCKMNKIESAQRLF 1516
            NV+TYNILI   C +G+V +S  LLRQMK +GI PDTFSFNALI      N+ + A++LF
Sbjct: 569  NVITYNILICSFCAIGDVSRSTHLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLF 628

Query: 1515 NSMLRLGLSPDSYSCNAFIKKMCESGRIDEAKKMVLTMEANGHAPDPYAYSLIVDS 1348
            +SMLRLG+ PD+Y+  A IK +C+SGR D+A+++ L+M+ NG  PD Y  SL  D+
Sbjct: 629  DSMLRLGIQPDNYTYGALIKSLCKSGRHDKAREIFLSMKENGCTPDSYTCSLFSDT 684



 Score = 92.4 bits (228), Expect = 7e-16
 Identities = 77/336 (22%), Positives = 134/336 (39%), Gaps = 8/336 (2%)
 Frame = -1

Query: 2748 PTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHGVCKIGIVDEALRL 2569
            P++  +N  +  ++K   L +    F         P   TY  LI  + K G ++   R 
Sbjct: 393  PSSSTFNITLACVLKKLDLKVTCTVFDNCVQSGVKPGFSTYLTLIEALYKAGKMEIGNRY 452

Query: 2568 LKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVVPSEATYRSLVHGVFR 2389
            + ++   G   N+++Y ++ID  C  K +D A ++   +  + + P+  TY +L+ G  R
Sbjct: 453  MDRLINDGLISNIYSYNMVIDCLCKGKSMDRASEMFRDLHNRGISPNIVTYNTLIGGFCR 512

Query: 2388 CLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREGADILRMVGKKGYIPDSAT 2209
                                               N    +  ++L M+ +  + PD  T
Sbjct: 513  -----------------------------------NGNMDKAQELLEMLLESRFRPDIFT 537

Query: 2208 FSILM--VCFTKDLNLHETCNIVNGFTEQGGMLGFN------TYIALIKALFKVGMVEEG 2053
            F+ L+  +C       H+  N    FTE   M+ ++      TY  LI +   +G V   
Sbjct: 538  FNSLIDGLC-----QAHKHENAFGCFTE---MVEWDVPPNVITYNILICSFCAIGDVSRS 589

Query: 2052 NQYLDEMVHDGLVSSVVSYNMLIDMFCQAEMMEKALTTLMEMHRRGVAPNLVTYNTIING 1873
               L +M   G+     S+N LI  +      +KA      M R G+ P+  TY  +I  
Sbjct: 590  THLLRQMKLHGIQPDTFSFNALIQGYTGKNRFQKAEKLFDSMLRLGIQPDNYTYGALIKS 649

Query: 1872 YSKAGQISRVQEILKMLLKHGFKPDKYTFSSIIDGL 1765
              K+G+  + +EI   + ++G  PD YT S   D L
Sbjct: 650  LCKSGRHDKAREIFLSMKENGCTPDSYTCSLFSDTL 685


>ref|XP_003530549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g16890, mitochondrial-like [Glycine max]
          Length = 678

 Score =  670 bits (1729), Expect = 0.0
 Identities = 320/603 (53%), Positives = 440/603 (72%), Gaps = 5/603 (0%)
 Frame = -1

Query: 3147 IDHSYLSEILARNDWFYLLNHEFKAKRTSLNQQYVVRVLQNEESPLSCVRFYVWVSNVED 2968
            IDH Y+S++L+R DW  LLNH+  +K   LN  Y V + QN+++P   ++F+ W+S+V  
Sbjct: 44   IDHLYISQLLSRPDWAVLLNHDLSSKTLLLNPSYAVSIFQNQQNPSHAIKFHSWLSHVNP 103

Query: 2967 RLAKDQLVQRVLGNRLYRNGPVVLSADLIKEVVGFKCRITEEIVCVMIGSWGRLGLAKYC 2788
             LA    V R L N L+R GP +LS DL++E+     R+TE+++C ++ SWGRLGLA Y 
Sbjct: 104  TLAAHNSVHRALRNTLHRKGPALLSVDLLRELRNLGFRVTEDLLCALLASWGRLGLANYS 163

Query: 2787 TEVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNILIHG 2608
              VF QIS+LGLSPTTRLYNA+IDALVKSNS+DLAY KFQQM ADNCV DRFTYN LIHG
Sbjct: 164  AHVFCQISFLGLSPTTRLYNALIDALVKSNSIDLAYLKFQQMAADNCVADRFTYNTLIHG 223

Query: 2607 VCKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKNVVPS 2428
            VCK+G+VDEALRL++QM+  G+ PNVFTYT+LI+GFC A RVDEAF + ETM++  V P+
Sbjct: 224  VCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETMKDSGVYPN 283

Query: 2427 EATYRSLVHGVFRCLPLREAYDLFLSFVGREPIMSK----HACDTILICLAKNSLSREGA 2260
            EAT R+LVHGVFRC+   +A +L   F+ RE    +     ACDT+L CLA NS+++E  
Sbjct: 284  EATVRALVHGVFRCVDPSKALELLSEFLDREQEQERVHFMLACDTVLYCLANNSMAKEMV 343

Query: 2259 DILRMV-GKKGYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEQGGMLGFNTYIALIKA 2083
              LR V G+ GY P ++ F+++M C  K   L ETC++     +QG   G   Y+ALI+ 
Sbjct: 344  VFLRRVLGRGGYFPGNSVFNVVMACLVKGAELRETCDVFEILRKQGVKAGIGAYLALIEV 403

Query: 2082 LFKVGMVEEGNQYLDEMVHDGLVSSVVSYNMLIDMFCQAEMMEKALTTLMEMHRRGVAPN 1903
            L+K    EEG++   +++ DGL+S+V SYNM+I+ FC+A++M+ A     +M  RGV PN
Sbjct: 404  LYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQVRGVVPN 463

Query: 1902 LVTYNTIINGYSKAGQISRVQEILKMLLKHGFKPDKYTFSSIIDGLCRENRLEDAFNCFS 1723
            LVT+NT+ING+ K G I + +++L+ LL++G KPD +TFSSI+DGLC+  R E+A  CF+
Sbjct: 464  LVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEEALECFT 523

Query: 1722 EMVEWNVIPNVVTYNILIRCLCVVGNVGKSLQLLRQMKANGISPDTFSFNALIVSLCKMN 1543
            EM+EW + PN V YNILIR LC +G+V +S++LLR+M+  GISPDT+S+NALI   C+MN
Sbjct: 524  EMIEWGINPNAVIYNILIRSLCTIGDVARSVKLLRRMQKEGISPDTYSYNALIQIFCRMN 583

Query: 1542 KIESAQRLFNSMLRLGLSPDSYSCNAFIKKMCESGRIDEAKKMVLTMEANGHAPDPYAYS 1363
            K+E A++LF+SM R GL+PD+Y+ +AFI+ + ESGR++EAKKM  +MEANG +PD Y  +
Sbjct: 584  KVEKAKKLFDSMSRSGLNPDNYTYSAFIEALSESGRLEEAKKMFYSMEANGCSPDSYICN 643

Query: 1362 LIV 1354
            LI+
Sbjct: 644  LII 646



 Score =  112 bits (281), Expect = 5e-22
 Identities = 88/373 (23%), Positives = 161/373 (43%), Gaps = 17/373 (4%)
 Frame = -1

Query: 2964 LAKDQLV--QRVLGNRLYRNGPVVLSADLIKEVVGFKCRITEEIVCVMIGSWGRLGLAKY 2791
            +AK+ +V  +RVLG   Y  G  V +  +   V G + R T ++  ++     + G+  Y
Sbjct: 338  MAKEMVVFLRRVLGRGGYFPGNSVFNVVMACLVKGAELRETCDVFEILRKQGVKAGIGAY 397

Query: 2790 CT---------------EVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPA 2656
                              V+GQ+   GL      YN +I+   ++  +D A   F+ M  
Sbjct: 398  LALIEVLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDMQV 457

Query: 2655 DNCVPDRFTYNILIHGVCKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDE 2476
               VP+  T+N LI+G CK G +D+A +LL+ +  +G  P++FT++ ++DG C  KR +E
Sbjct: 458  RGVVPNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQIKRTEE 517

Query: 2475 AFQLLETMREKNVVPSEATYRSLVHGVFRCLPLREAYDLFLSFVGREPIMSKHACDTILI 2296
            A +    M E  + P+   Y  L+  +             +  V R              
Sbjct: 518  ALECFTEMIEWGINPNAVIYNILIRSLCT-----------IGDVARS------------- 553

Query: 2295 CLAKNSLSREGADILRMVGKKGYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEQGGML 2116
                         +LR + K+G  PD+ +++ L+  F +   + +   + +  +  G   
Sbjct: 554  -----------VKLLRRMQKEGISPDTYSYNALIQIFCRMNKVEKAKKLFDSMSRSGLNP 602

Query: 2115 GFNTYIALIKALFKVGMVEEGNQYLDEMVHDGLVSSVVSYNMLIDMFCQAEMMEKALTTL 1936
               TY A I+AL + G +EE  +    M  +G        N++I +  Q E +E+A   +
Sbjct: 603  DNYTYSAFIEALSESGRLEEAKKMFYSMEANGCSPDSYICNLIIKILVQQEYVEEAQNII 662

Query: 1935 MEMHRRGVAPNLV 1897
                ++G++ N +
Sbjct: 663  ERCRQKGISLNSI 675



 Score = 95.9 bits (237), Expect = 6e-17
 Identities = 73/297 (24%), Positives = 126/297 (42%), Gaps = 40/297 (13%)
 Frame = -1

Query: 2106 TYIALIKALFKVGMVEEGNQYLDEMVHDGLVSSVVSYNMLIDMFCQAEMMEKALTTLMEM 1927
            TY  LI  + KVG+V+E  + + +M   G   +V +Y MLI+ FC A  +++A      M
Sbjct: 216  TYNTLIHGVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIEGFCIASRVDEAFGVFETM 275

Query: 1926 HRRGVAPNLVTYNTIINGYSKAGQISRVQEILKMLLKHGFKPDKYTFSSIIDGLC---RE 1756
               GV PN  T   +++G  +    S+  E+L   L    + ++  F    D +      
Sbjct: 276  KDSGVYPNEATVRALVHGVFRCVDPSKALELLSEFLDREQEQERVHFMLACDTVLYCLAN 335

Query: 1755 NRLEDAFNCFSEMV--EWNVIPNVVTYNILIRCLC-------------------VVGNVG 1639
            N +      F   V       P    +N+++ CL                    V   +G
Sbjct: 336  NSMAKEMVVFLRRVLGRGGYFPGNSVFNVVMACLVKGAELRETCDVFEILRKQGVKAGIG 395

Query: 1638 KSLQLLR----------------QMKANGISPDTFSFNALIVSLCKMNKIESAQRLFNSM 1507
              L L+                 Q+ ++G+  + FS+N +I   C+   +++A   F  M
Sbjct: 396  AYLALIEVLYKNEWREEGDRVYGQLISDGLISNVFSYNMIINCFCRAKLMDNASEAFRDM 455

Query: 1506 LRLGLSPDSYSCNAFIKKMCESGRIDEAKKMVLTMEANGHAPDPYAYSLIVDS*SQV 1336
               G+ P+  + N  I   C+ G ID+A+K++ ++  NG  PD + +S IVD   Q+
Sbjct: 456  QVRGVVPNLVTFNTLINGHCKDGAIDKARKLLESLLENGLKPDIFTFSSIVDGLCQI 512



 Score = 63.2 bits (152), Expect = 5e-07
 Identities = 37/116 (31%), Positives = 61/116 (52%), Gaps = 3/116 (2%)
 Frame = -1

Query: 1689 VTYNILIRCLCVVGNVGK---SLQLLRQMKANGISPDTFSFNALIVSLCKMNKIESAQRL 1519
            VT ++L   L   G +G    S  +  Q+   G+SP T  +NALI +L K N I+ A   
Sbjct: 142  VTEDLLCALLASWGRLGLANYSAHVFCQISFLGLSPTTRLYNALIDALVKSNSIDLAYLK 201

Query: 1518 FNSMLRLGLSPDSYSCNAFIKKMCESGRIDEAKKMVLTMEANGHAPDPYAYSLIVD 1351
            F  M       D ++ N  I  +C+ G +DEA ++V  M+  GH P+ + Y+++++
Sbjct: 202  FQQMAADNCVADRFTYNTLIHGVCKVGVVDEALRLVRQMKDKGHFPNVFTYTMLIE 257


>ref|NP_188314.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
            gi|75274022|sp|Q9LSQ2.1|PP239_ARATH RecName:
            Full=Putative pentatricopeptide repeat-containing protein
            At3g16890, mitochondrial; AltName: Full=Protein
            PENTATRICOPEPTIDE REPEAT 40; Flags: Precursor
            gi|7670019|dbj|BAA94973.1| salt-inducible protein-like
            [Arabidopsis thaliana] gi|332642359|gb|AEE75880.1|
            pentatricopeptide repeat-containing protein [Arabidopsis
            thaliana]
          Length = 659

 Score =  666 bits (1719), Expect = 0.0
 Identities = 316/601 (52%), Positives = 433/601 (72%)
 Frame = -1

Query: 3159 PVNVIDHSYLSEILARNDWFYLLNHEFKAKRTSLNQQYVVRVLQNEESPLSCVRFYVWVS 2980
            P N ++  Y+S+++ R DWF +LN EF   R  LN ++V+ VLQN+++PL  +RFY+WVS
Sbjct: 41   PTNPLNQRYISQVIERKDWFLILNQEFTTHRIGLNTRFVISVLQNQDNPLHSLRFYLWVS 100

Query: 2979 NVEDRLAKDQLVQRVLGNRLYRNGPVVLSADLIKEVVGFKCRITEEIVCVMIGSWGRLGL 2800
            N +   AKDQ ++ VLGN L+R GP++LS +L+KE+     RI++E++CV+IGSWGRLGL
Sbjct: 101  NFDPVYAKDQSLKSVLGNALFRKGPLLLSMELLKEIRDSGYRISDELMCVLIGSWGRLGL 160

Query: 2799 AKYCTEVFGQISYLGLSPTTRLYNAVIDALVKSNSLDLAYFKFQQMPADNCVPDRFTYNI 2620
            AKYC +VF QIS+LG+ P+TRLYNAVIDALVKSNSLDLAY KFQQM +D C PDRFTYNI
Sbjct: 161  AKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNI 220

Query: 2619 LIHGVCKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREKN 2440
            LIHGVCK G+VDEA+RL+KQME  G  PNVFTYTILIDGF  A RVDEA + LE MR + 
Sbjct: 221  LIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEALKQLEMMRVRK 280

Query: 2439 VVPSEATYRSLVHGVFRCLPLREAYDLFLSFVGREPIMSKHACDTILICLAKNSLSREGA 2260
            + P+EAT R+ VHG+FRCLP  +A+++ + F+ ++  + +   D +L CL+ NS+++E  
Sbjct: 281  LNPNEATIRTFVHGIFRCLPPCKAFEVLVGFMEKDSNLQRVGYDAVLYCLSNNSMAKETG 340

Query: 2259 DILRMVGKKGYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEQGGMLGFNTYIALIKAL 2080
              LR +G++GYIPDS+TF+  M C  K  +L ETC I +GF  +G   GFN Y+ L++AL
Sbjct: 341  QFLRKIGERGYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQAL 400

Query: 2079 FKVGMVEEGNQYLDEMVHDGLVSSVVSYNMLIDMFCQAEMMEKALTTLMEMHRRGVAPNL 1900
                   EG++YL +M  DGL+SSV SYN +ID  C+A  +E A   L EM  RG++PNL
Sbjct: 401  LNAQRFSEGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNL 460

Query: 1899 VTYNTIINGYSKAGQISRVQEILKMLLKHGFKPDKYTFSSIIDGLCRENRLEDAFNCFSE 1720
            VT+NT ++GYS  G + +V  +L+ LL HGFKPD  TFS II+ LCR   ++DAF+CF E
Sbjct: 461  VTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKE 520

Query: 1719 MVEWNVIPNVVTYNILIRCLCVVGNVGKSLQLLRQMKANGISPDTFSFNALIVSLCKMNK 1540
            M+EW + PN +TYNILIR  C  G+  +S++L  +MK NG+SPD +++NA I S CKM K
Sbjct: 521  MLEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRK 580

Query: 1539 IESAQRLFNSMLRLGLSPDSYSCNAFIKKMCESGRIDEAKKMVLTMEANGHAPDPYAYSL 1360
            ++ A+ L  +MLR+GL PD+++ +  IK + ESGR  EA++M  ++E +G  PD Y   L
Sbjct: 581  VKKAEELLKTMLRIGLKPDNFTYSTLIKALSESGRESEAREMFSSIERHGCVPDSYTKRL 640

Query: 1359 I 1357
            +
Sbjct: 641  V 641



 Score =  103 bits (258), Expect = 2e-19
 Identities = 99/464 (21%), Positives = 173/464 (37%), Gaps = 39/464 (8%)
 Frame = -1

Query: 2622 ILIHGVCKIGIVDEALRLLKQMEGSGYSPNVFTYTILIDGFCNAKRVDEAFQLLETMREK 2443
            +LI    ++G+      +  Q+   G  P+   Y  +ID    +  +D A+   + MR  
Sbjct: 150  VLIGSWGRLGLAKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQMRSD 209

Query: 2442 NVVPSEATYRSLVHGVFRCLPLREAYDLF--LSFVGREPIMSKHAC--DTILICLAKNSL 2275
               P   TY  L+HGV +   + EA  L   +   G  P +  +    D  LI    +  
Sbjct: 210  GCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRVDEA 269

Query: 2274 SREGADILRMVGKKGYIPDSATFSILMVCFTKDLNLHETCNIVNGFTEQGGMLGFNTYIA 2095
             ++    L M+  +   P+ AT    +    + L   +   ++ GF E+   L    Y A
Sbjct: 270  LKQ----LEMMRVRKLNPNEATIRTFVHGIFRCLPPCKAFEVLVGFMEKDSNLQRVGYDA 325

Query: 2094 LIKALFKVGMVEEGNQYLDEMVHDGLVSSVVSYNMLIDMFCQAEMMEKALTTLMEMHRRG 1915
            ++  L    M +E  Q+L                                    ++  RG
Sbjct: 326  VLYCLSNNSMAKETGQFL-----------------------------------RKIGERG 350

Query: 1914 VAPNLVTYNTIINGYSKAGQISRVQEILKMLLKHGFKPDKYTFSSIIDGLCRENRLEDAF 1735
              P+  T+N  ++   K   +     I    +  G KP    +  ++  L    R  +  
Sbjct: 351  YIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVKPGFNGYLVLVQALLNAQRFSEGD 410

Query: 1734 NCFSEMVEWNVIPNVVTYNILIRCLC---------------------------------- 1657
                +M    ++ +V +YN +I CLC                                  
Sbjct: 411  RYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAMFLTEMQDRGISPNLVTFNTFLSGY 470

Query: 1656 -VVGNVGKSLQLLRQMKANGISPDTFSFNALIVSLCKMNKIESAQRLFNSMLRLGLSPDS 1480
             V G+V K   +L ++  +G  PD  +F+ +I  LC+  +I+ A   F  ML  G+ P+ 
Sbjct: 471  SVRGDVKKVHGVLEKLLVHGFKPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIEPNE 530

Query: 1479 YSCNAFIKKMCESGRIDEAKKMVLTMEANGHAPDPYAYSLIVDS 1348
             + N  I+  C +G  D + K+   M+ NG +PD YAY+  + S
Sbjct: 531  ITYNILIRSCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQS 574



 Score = 99.4 bits (246), Expect = 6e-18
 Identities = 83/357 (23%), Positives = 147/357 (41%), Gaps = 40/357 (11%)
 Frame = -1

Query: 2301 LICLAKNSLSREGA-----DILRMVGKKGYIPDSATFSILMVCFTKDLNLHETCNIVNGF 2137
            L+C+   S  R G      D+   +   G  P +  ++ ++    K  +L          
Sbjct: 147  LMCVLIGSWGRLGLAKYCNDVFAQISFLGMKPSTRLYNAVIDALVKSNSLDLAYLKFQQM 206

Query: 2136 TEQGGMLGFNTYIALIKALFKVGMVEEGNQYLDEMVHDGLVSSVVSYNMLIDMFCQAEMM 1957
               G      TY  LI  + K G+V+E  + + +M  +G   +V +Y +LID F  A  +
Sbjct: 207  RSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAGRV 266

Query: 1956 EKALTTLMEMHRRGVAPNLVTYNTIINGY-----------------SKAGQISRVQ---- 1840
            ++AL  L  M  R + PN  T  T ++G                   K   + RV     
Sbjct: 267  DEALKQLEMMRVRKLNPNEATIRTFVHGIFRCLPPCKAFEVLVGFMEKDSNLQRVGYDAV 326

Query: 1839 --------------EILKMLLKHGFKPDKYTFSSIIDGLCRENRLEDAFNCFSEMVEWNV 1702
                          + L+ + + G+ PD  TF++ +  L + + L +    F   V   V
Sbjct: 327  LYCLSNNSMAKETGQFLRKIGERGYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGV 386

Query: 1701 IPNVVTYNILIRCLCVVGNVGKSLQLLRQMKANGISPDTFSFNALIVSLCKMNKIESAQR 1522
             P    Y +L++ L       +  + L+QM  +G+    +S+NA+I  LCK  +IE+A  
Sbjct: 387  KPGFNGYLVLVQALLNAQRFSEGDRYLKQMGVDGLLSSVYSYNAVIDCLCKARRIENAAM 446

Query: 1521 LFNSMLRLGLSPDSYSCNAFIKKMCESGRIDEAKKMVLTMEANGHAPDPYAYSLIVD 1351
                M   G+SP+  + N F+      G + +   ++  +  +G  PD   +SLI++
Sbjct: 447  FLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLIIN 503