BLASTX nr result
ID: Coptis23_contig00001117
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00001117
(1407 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI22115.3| unnamed protein product [Vitis vinifera] 657 0.0
ref|XP_002279656.1| PREDICTED: pentatricopeptide repeat-containi... 657 0.0
ref|XP_002316152.1| predicted protein [Populus trichocarpa] gi|2... 644 0.0
ref|XP_003555011.1| PREDICTED: pentatricopeptide repeat-containi... 638 e-180
ref|XP_002532083.1| pentatricopeptide repeat-containing protein,... 638 e-180
>emb|CBI22115.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 657 bits (1696), Expect = 0.0
Identities = 325/374 (86%), Positives = 354/374 (94%)
Frame = -3
Query: 1405 EMHASSGNVDSAMKLYNSMANAGLRPGLSTYTSLLTVLANKKLVDVAAKVLLEMKSMGYP 1226
EMH++SG VDSAMKLYNSM NAGLRPGLSTYT+LLT+LANKKLVDVAAKVLLEMK+MG+
Sbjct: 380 EMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFS 439
Query: 1225 SDVSASDILMIYIKDGSVDLALRWLRFMGSSGIRTNNFIIRQLFESCMKNGLYESAKPLL 1046
DVSASD+LM+YIKDGSVDLALRWLRFMGSSGIRTNNFIIRQLFESCMKNGLYESAKPLL
Sbjct: 440 VDVSASDVLMVYIKDGSVDLALRWLRFMGSSGIRTNNFIIRQLFESCMKNGLYESAKPLL 499
Query: 1045 DTYVDSAAKVDLILYTSILAHLVRCQDEQNERYLMSILSATKHKAHSFMCGLFTGPEQRK 866
+TYV+SAAKVDLILYTSILAHLVRCQ+EQNER+LM ILSATKHKAH+FMCGLFTGPEQRK
Sbjct: 500 ETYVNSAAKVDLILYTSILAHLVRCQEEQNERHLMLILSATKHKAHTFMCGLFTGPEQRK 559
Query: 865 KPVLSFVREFFQGIDYEMEESATRYFXXXXXXXXXLMGQINRARCVWKVSYENKLFPKAI 686
+PVLSFVREFFQ +DYE+EE A RYF LMGQINRARCVWKV+YENKLFPKAI
Sbjct: 560 QPVLSFVREFFQSVDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAI 619
Query: 685 VFDQHIAWSLDVRNLSVGAALIAVIHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQI 506
VFDQHIAWSLDVRNLSVGAAL+AV+HTLHRFRKRMLYYGVVPRRIKLVTGPTLKIV+AQ+
Sbjct: 620 VFDQHIAWSLDVRNLSVGAALVAVVHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVVAQM 679
Query: 505 LSSVESPFEVSKVVLRAPGDSVLEWFKKPIVQQFLLNEIPSRGDLLMHKLNTLFPSSAPE 326
L+SVESPFEVSKVVLRAPGDSV+EWFKKPIVQQFL+NEIPSR D+LMHKLNTLFPSSAPE
Sbjct: 680 LNSVESPFEVSKVVLRAPGDSVMEWFKKPIVQQFLINEIPSRADILMHKLNTLFPSSAPE 739
Query: 325 IRSLAPPPKILSGQ 284
IRSL+PP ++SG+
Sbjct: 740 IRSLSPPKPLISGK 753
Score = 60.5 bits (145), Expect = 1e-06
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Frame = -3
Query: 1396 ASSGNVDSAMKLYNSMANAGLRPGLSTYTSLLTVLANKKLVDVAAKVLLEMKSMGY-PSD 1220
A SG +D+A KL+ M LRP + SL+ + +D + KV +EM+ G PS
Sbjct: 243 AKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPSA 302
Query: 1219 VSASDILMIYIKDGSVDLALRWLRFMGSSGIRTNNFIIRQLFESCMKNGLYESA 1058
++ ++K G ++ ALR M +G R N + + ES K+G E+A
Sbjct: 303 TMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLETA 356
>ref|XP_002279656.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
mitochondrial-like [Vitis vinifera]
Length = 844
Score = 657 bits (1696), Expect = 0.0
Identities = 325/374 (86%), Positives = 354/374 (94%)
Frame = -3
Query: 1405 EMHASSGNVDSAMKLYNSMANAGLRPGLSTYTSLLTVLANKKLVDVAAKVLLEMKSMGYP 1226
EMH++SG VDSAMKLYNSM NAGLRPGLSTYT+LLT+LANKKLVDVAAKVLLEMK+MG+
Sbjct: 467 EMHSASGQVDSAMKLYNSMTNAGLRPGLSTYTALLTLLANKKLVDVAAKVLLEMKAMGFS 526
Query: 1225 SDVSASDILMIYIKDGSVDLALRWLRFMGSSGIRTNNFIIRQLFESCMKNGLYESAKPLL 1046
DVSASD+LM+YIKDGSVDLALRWLRFMGSSGIRTNNFIIRQLFESCMKNGLYESAKPLL
Sbjct: 527 VDVSASDVLMVYIKDGSVDLALRWLRFMGSSGIRTNNFIIRQLFESCMKNGLYESAKPLL 586
Query: 1045 DTYVDSAAKVDLILYTSILAHLVRCQDEQNERYLMSILSATKHKAHSFMCGLFTGPEQRK 866
+TYV+SAAKVDLILYTSILAHLVRCQ+EQNER+LM ILSATKHKAH+FMCGLFTGPEQRK
Sbjct: 587 ETYVNSAAKVDLILYTSILAHLVRCQEEQNERHLMLILSATKHKAHTFMCGLFTGPEQRK 646
Query: 865 KPVLSFVREFFQGIDYEMEESATRYFXXXXXXXXXLMGQINRARCVWKVSYENKLFPKAI 686
+PVLSFVREFFQ +DYE+EE A RYF LMGQINRARCVWKV+YENKLFPKAI
Sbjct: 647 QPVLSFVREFFQSVDYELEEGAARYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAI 706
Query: 685 VFDQHIAWSLDVRNLSVGAALIAVIHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQI 506
VFDQHIAWSLDVRNLSVGAAL+AV+HTLHRFRKRMLYYGVVPRRIKLVTGPTLKIV+AQ+
Sbjct: 707 VFDQHIAWSLDVRNLSVGAALVAVVHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVVAQM 766
Query: 505 LSSVESPFEVSKVVLRAPGDSVLEWFKKPIVQQFLLNEIPSRGDLLMHKLNTLFPSSAPE 326
L+SVESPFEVSKVVLRAPGDSV+EWFKKPIVQQFL+NEIPSR D+LMHKLNTLFPSSAPE
Sbjct: 767 LNSVESPFEVSKVVLRAPGDSVMEWFKKPIVQQFLINEIPSRADILMHKLNTLFPSSAPE 826
Query: 325 IRSLAPPPKILSGQ 284
IRSL+PP ++SG+
Sbjct: 827 IRSLSPPKPLISGK 840
Score = 60.5 bits (145), Expect = 1e-06
Identities = 36/114 (31%), Positives = 57/114 (50%), Gaps = 1/114 (0%)
Frame = -3
Query: 1396 ASSGNVDSAMKLYNSMANAGLRPGLSTYTSLLTVLANKKLVDVAAKVLLEMKSMGY-PSD 1220
A SG +D+A KL+ M LRP + SL+ + +D + KV +EM+ G PS
Sbjct: 330 AKSGRLDAAFKLFQEMKEKNLRPSFLVFASLVDSMGKAGRLDTSMKVYMEMQGFGLRPSA 389
Query: 1219 VSASDILMIYIKDGSVDLALRWLRFMGSSGIRTNNFIIRQLFESCMKNGLYESA 1058
++ ++K G ++ ALR M +G R N + + ES K+G E+A
Sbjct: 390 TMYVSLIESFVKAGKLETALRIWDEMKKAGFRPNYGLYTMVVESHAKSGKLETA 443
>ref|XP_002316152.1| predicted protein [Populus trichocarpa] gi|222865192|gb|EEF02323.1|
predicted protein [Populus trichocarpa]
Length = 785
Score = 644 bits (1662), Expect = 0.0
Identities = 316/374 (84%), Positives = 353/374 (94%)
Frame = -3
Query: 1405 EMHASSGNVDSAMKLYNSMANAGLRPGLSTYTSLLTVLANKKLVDVAAKVLLEMKSMGYP 1226
EMHA+SG VD+AMKLYNSM NAGLRPGLSTYT+LLT+LA+KKLVDVAAK+LLEMK+MG+
Sbjct: 410 EMHAASGQVDAAMKLYNSMTNAGLRPGLSTYTALLTLLAHKKLVDVAAKILLEMKAMGFS 469
Query: 1225 SDVSASDILMIYIKDGSVDLALRWLRFMGSSGIRTNNFIIRQLFESCMKNGLYESAKPLL 1046
DVSASD+LM+YIKDGSVDL+LRWLRFM SSGIRTNNFIIRQLFESCMKNGLYESAKPLL
Sbjct: 470 VDVSASDVLMVYIKDGSVDLSLRWLRFMSSSGIRTNNFIIRQLFESCMKNGLYESAKPLL 529
Query: 1045 DTYVDSAAKVDLILYTSILAHLVRCQDEQNERYLMSILSATKHKAHSFMCGLFTGPEQRK 866
+TYV+SAAKVDLILYTSILA+LVRCQ+EQNER+LM+ILSAT+HKAH+FMCGLFTGPEQRK
Sbjct: 530 ETYVNSAAKVDLILYTSILAYLVRCQEEQNERHLMAILSATRHKAHAFMCGLFTGPEQRK 589
Query: 865 KPVLSFVREFFQGIDYEMEESATRYFXXXXXXXXXLMGQINRARCVWKVSYENKLFPKAI 686
+PVLSFVREFFQGIDYE+EE A +YF LMGQINRARCVWKV+YENKLFPKAI
Sbjct: 590 QPVLSFVREFFQGIDYELEEGAAKYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAI 649
Query: 685 VFDQHIAWSLDVRNLSVGAALIAVIHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQI 506
VFDQHIAWSLDVRNLSVGAAL+AV+HTLHRFRKRMLYYGV+PRRIKLVTGPTL+IV+AQ+
Sbjct: 650 VFDQHIAWSLDVRNLSVGAALVAVVHTLHRFRKRMLYYGVIPRRIKLVTGPTLRIVVAQM 709
Query: 505 LSSVESPFEVSKVVLRAPGDSVLEWFKKPIVQQFLLNEIPSRGDLLMHKLNTLFPSSAPE 326
LSSVESPFEVSKVVLRAPGDSV+EWFKKPIVQQFLLNEIPSR D+LMH+LN LFP+SAPE
Sbjct: 710 LSSVESPFEVSKVVLRAPGDSVMEWFKKPIVQQFLLNEIPSRADILMHRLNILFPTSAPE 769
Query: 325 IRSLAPPPKILSGQ 284
IRSL+PP ++S +
Sbjct: 770 IRSLSPPKPLISAK 783
Score = 60.1 bits (144), Expect = 1e-06
Identities = 36/114 (31%), Positives = 58/114 (50%), Gaps = 1/114 (0%)
Frame = -3
Query: 1396 ASSGNVDSAMKLYNSMANAGLRPGLSTYTSLLTVLANKKLVDVAAKVLLEMKSMGY-PSD 1220
A SG +D+A KL+ M RP L ++SL+ + ++ + KV +EM+ +G PS
Sbjct: 273 AKSGRLDAAFKLFQEMKERNFRPSLGIFSSLVDSMGKAGRLETSMKVYMEMQGLGLRPSA 332
Query: 1219 VSASDILMIYIKDGSVDLALRWLRFMGSSGIRTNNFIIRQLFESCMKNGLYESA 1058
+ ++ Y K G +D ALR M +G R N + + ES K+G + A
Sbjct: 333 IMYVSLIESYTKAGKLDAALRLWDEMKIAGFRPNFGLYTLIIESHAKSGKLDIA 386
>ref|XP_003555011.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79490,
mitochondrial-like [Glycine max]
Length = 752
Score = 638 bits (1645), Expect = e-180
Identities = 317/374 (84%), Positives = 348/374 (93%)
Frame = -3
Query: 1405 EMHASSGNVDSAMKLYNSMANAGLRPGLSTYTSLLTVLANKKLVDVAAKVLLEMKSMGYP 1226
EMHA+SG +D AMKLYNSM NAGLRPGLSTYT LLT+LANKKLVDVAAK+LLEMK+MGY
Sbjct: 377 EMHAASGQIDPAMKLYNSMTNAGLRPGLSTYTVLLTLLANKKLVDVAAKILLEMKAMGYS 436
Query: 1225 SDVSASDILMIYIKDGSVDLALRWLRFMGSSGIRTNNFIIRQLFESCMKNGLYESAKPLL 1046
DV+ASDILM+YIK+GSVDLALRWLRFMGSSGIRTNNFIIRQLFESCMK+GL+ESAKPLL
Sbjct: 437 VDVTASDILMVYIKEGSVDLALRWLRFMGSSGIRTNNFIIRQLFESCMKSGLFESAKPLL 496
Query: 1045 DTYVDSAAKVDLILYTSILAHLVRCQDEQNERYLMSILSATKHKAHSFMCGLFTGPEQRK 866
+TYV+SAAKVDLILYTSILAHLVRCQ+E+NER+LMSILSATKHKAHSFMCGLFTGPE R
Sbjct: 497 ETYVNSAAKVDLILYTSILAHLVRCQEEKNERHLMSILSATKHKAHSFMCGLFTGPEHRG 556
Query: 865 KPVLSFVREFFQGIDYEMEESATRYFXXXXXXXXXLMGQINRARCVWKVSYENKLFPKAI 686
+PVL+FVREFFQGIDYE+EE A +YF LMGQINRARCVWKV+YENKLFPKAI
Sbjct: 557 QPVLTFVREFFQGIDYELEEGAAKYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAI 616
Query: 685 VFDQHIAWSLDVRNLSVGAALIAVIHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQI 506
VFDQHIAWSLDVRNLSVGAALIAV+HTLHRFRKRMLYYG+VPRRIKLVTG TLKIVIAQ+
Sbjct: 617 VFDQHIAWSLDVRNLSVGAALIAVVHTLHRFRKRMLYYGIVPRRIKLVTGATLKIVIAQM 676
Query: 505 LSSVESPFEVSKVVLRAPGDSVLEWFKKPIVQQFLLNEIPSRGDLLMHKLNTLFPSSAPE 326
LSSVESPFEVSKVVLRA GDSV+EWFKKPIVQQFLLNEIPSR D+LMHKLN LFPSSAPE
Sbjct: 677 LSSVESPFEVSKVVLRASGDSVMEWFKKPIVQQFLLNEIPSRSDILMHKLNILFPSSAPE 736
Query: 325 IRSLAPPPKILSGQ 284
+RSL+PP +++ +
Sbjct: 737 LRSLSPPKPLIASR 750
Score = 68.6 bits (166), Expect = 4e-09
Identities = 42/123 (34%), Positives = 64/123 (52%), Gaps = 1/123 (0%)
Frame = -3
Query: 1396 ASSGNVDSAMKLYNSMANAGLRPGLSTYTSLLTVLANKKLVDVAAKVLLEMKSMGY-PSD 1220
A SG +D+A KL+ M G RPGL+ + SL+ + +D A KV +EM+ GY P
Sbjct: 240 AKSGRLDAAFKLFQEMKVRGFRPGLNVFASLVDSMGKAGRLDSAMKVYMEMRGYGYKPPP 299
Query: 1219 VSASDILMIYIKDGSVDLALRWLRFMGSSGIRTNNFIIRQLFESCMKNGLYESAKPLLDT 1040
++ Y+K G ++ ALR M +G R N + + ES K+G E A + T
Sbjct: 300 TIYVSLIESYVKSGKLETALRLWDEMRMAGFRPNFGLYTLIIESHAKSGKLEIA---MST 356
Query: 1039 YVD 1031
++D
Sbjct: 357 FLD 359
>ref|XP_002532083.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223528243|gb|EEF30297.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 841
Score = 638 bits (1645), Expect = e-180
Identities = 317/366 (86%), Positives = 346/366 (94%)
Frame = -3
Query: 1405 EMHASSGNVDSAMKLYNSMANAGLRPGLSTYTSLLTVLANKKLVDVAAKVLLEMKSMGYP 1226
EMHA+SG VDSAMKLYNSM NAGL+PGLSTYT+LLT+LA+KKLVDVAAK+LLEMK+MG+
Sbjct: 471 EMHAASGQVDSAMKLYNSMTNAGLKPGLSTYTALLTLLASKKLVDVAAKILLEMKAMGFS 530
Query: 1225 SDVSASDILMIYIKDGSVDLALRWLRFMGSSGIRTNNFIIRQLFESCMKNGLYESAKPLL 1046
DVSASD+LM+YIKDGSVDLALRWL FMGSSGIRTNNFIIRQLFESCMK GLYESAKPLL
Sbjct: 531 VDVSASDVLMVYIKDGSVDLALRWLSFMGSSGIRTNNFIIRQLFESCMKKGLYESAKPLL 590
Query: 1045 DTYVDSAAKVDLILYTSILAHLVRCQDEQNERYLMSILSATKHKAHSFMCGLFTGPEQRK 866
+TYV+SAAKVDLILYTSILA+LVRCQ+EQ+ER+LMSIL AT+HKAH+FMCGLFTGPEQR+
Sbjct: 591 ETYVNSAAKVDLILYTSILANLVRCQEEQHERHLMSILGATRHKAHAFMCGLFTGPEQRQ 650
Query: 865 KPVLSFVREFFQGIDYEMEESATRYFXXXXXXXXXLMGQINRARCVWKVSYENKLFPKAI 686
+PVL FVREFFQGIDY++EE A +YF LMGQINRARCVWKV+YENKLFPKAI
Sbjct: 651 QPVLFFVREFFQGIDYDLEEGAAKYFVNVLLNYLVLMGQINRARCVWKVAYENKLFPKAI 710
Query: 685 VFDQHIAWSLDVRNLSVGAALIAVIHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVIAQI 506
VFDQHIAWSLDVRNLSVGAALIAV+HTLHRFRKRMLYYGVVPRRIKLVTGPTLKIV+AQ+
Sbjct: 711 VFDQHIAWSLDVRNLSVGAALIAVVHTLHRFRKRMLYYGVVPRRIKLVTGPTLKIVVAQM 770
Query: 505 LSSVESPFEVSKVVLRAPGDSVLEWFKKPIVQQFLLNEIPSRGDLLMHKLNTLFPSSAPE 326
LSSVESPFEVSKVVLRAPGDSV+EWFKKPIVQQFLLNEIPSR D+LMHKLNTLFPSSAPE
Sbjct: 771 LSSVESPFEVSKVVLRAPGDSVMEWFKKPIVQQFLLNEIPSRADILMHKLNTLFPSSAPE 830
Query: 325 IRSLAP 308
IRSLAP
Sbjct: 831 IRSLAP 836
Score = 57.8 bits (138), Expect = 7e-06
Identities = 35/114 (30%), Positives = 55/114 (48%), Gaps = 1/114 (0%)
Frame = -3
Query: 1396 ASSGNVDSAMKLYNSMANAGLRPGLSTYTSLLTVLANKKLVDVAAKVLLEMKSMGYPSDV 1217
A SG +D A KL+ M +RP ++SL+ + +D + K+ +EM+ G S
Sbjct: 334 AKSGRLDVAFKLFQEMKERKIRPSFGIFSSLVDSMGKSGRLDTSMKIYMEMQGFGLRSSA 393
Query: 1216 SA-SDILMIYIKDGSVDLALRWLRFMGSSGIRTNNFIIRQLFESCMKNGLYESA 1058
S ++ Y K G +D ALR M +G R N + + ES K+G + A
Sbjct: 394 SMYVSLIESYTKAGKLDTALRLWDEMKKAGFRPNYGLYTLIIESHAKSGKLDIA 447