BLASTX nr result
ID: Coptis23_contig00001077
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00001077
(3922 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mi... 1373 0.0
ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, ch... 1360 0.0
emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris] 1327 0.0
sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymeras... 1326 0.0
dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymer... 1320 0.0
>ref|XP_002267464.1| PREDICTED: DNA-directed RNA polymerase 1, mitochondrial [Vitis
vinifera]
Length = 978
Score = 1373 bits (3553), Expect = 0.0
Identities = 674/870 (77%), Positives = 754/870 (86%), Gaps = 1/870 (0%)
Frame = -1
Query: 3322 QGLLKEINKREKKKYPKPRMVGGMGHTKYHMLRRRQVKIETEAWAQAAKEYKELLSDMCE 3143
Q L++E+NK +K + +P+++GG+ K+++LRRRQ+K+ETEAW +AAKEY+ELLSDMCE
Sbjct: 113 QELVEEVNKGDKLE-KQPKLIGGVAQGKHNVLRRRQIKMETEAWEEAAKEYRELLSDMCE 171
Query: 3142 HKLAPNLPYMKSLFLGWFEPLKDKIVEEQDLCKQGKNRAAYAPQFDLLPADMMALITMHK 2963
KLAPNLPY+KSLFLGWFEPL+D I EQDLCKQGKNRAAYAP FD LPADMMA+ITMHK
Sbjct: 172 QKLAPNLPYIKSLFLGWFEPLRDVIAAEQDLCKQGKNRAAYAPYFDHLPADMMAVITMHK 231
Query: 2962 LMGLLMTGGEHGCARVVQASLQVGEAIEQEVRIYRFLXXXXXXXXXXXXXXXXXXXXXXX 2783
LMGLLMTG +G ARVVQA+ +GEAIE EVRI RF+
Sbjct: 232 LMGLLMTGEGNGSARVVQAACHIGEAIEHEVRIQRFM---EKTKKKSASSNNPDGGSNPV 288
Query: 2782 XXXXXKLRKRVTTLMKKQKLHQVRQIVRRQDDLKPWGQAAQAKVGSRLIELLLQTAYIQP 2603
KLRK+V+ LMKKQKL QVRQIV+RQDD KPWGQ A KVGSRLIELL++TAYIQP
Sbjct: 289 TKEQEKLRKKVSMLMKKQKLQQVRQIVKRQDDSKPWGQDANVKVGSRLIELLIETAYIQP 348
Query: 2602 PVDQIADTPPDIRPAFTHSLKTVSKDGQKSSRRFGVIECDPLVRQGLEKTARHMVIPYMP 2423
P DQ+ D PPDIRPAF H+LKTV K+ QK +RR+GVIECDPLVR+GLEKTARHMVIPYMP
Sbjct: 349 PADQLGDGPPDIRPAFVHTLKTVIKETQKGTRRYGVIECDPLVRKGLEKTARHMVIPYMP 408
Query: 2422 MLVPPINWTGYEKGGYLFLPSYIMRTHGAKQQRQALKWTPKKQLEPVFEALNTLGNTKWR 2243
MLVPP+NWTGY+KG YLFLPSY+MR HGA+QQR+A+K P+K LEP FEALNTLGNTKWR
Sbjct: 409 MLVPPLNWTGYDKGAYLFLPSYVMRIHGARQQREAIKRAPRKALEPAFEALNTLGNTKWR 468
Query: 2242 INKRVLGVIDRIWASGGRXXXXXXXXXXXXXXXXDTEDEAELXXXXXXXXXXXKENSERH 2063
INKRVLGVIDRIWASGGR DTEDEAE+ KENSERH
Sbjct: 469 INKRVLGVIDRIWASGGRLADLVDREDVPLPEEPDTEDEAEIRKWKWKVRSVKKENSERH 528
Query: 2062 SQRCDIELKLSVARKMKDESGFYYPHSVDFRGRAYPMHPYLNHLGSDLCRGALEFAEGRP 1883
SQRCDIELKL+VARKMKDE GF+YPH++DFRGRAYPMHPYLNHLGSDLCRG LEFAEGRP
Sbjct: 529 SQRCDIELKLAVARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRP 588
Query: 1882 LGKSGLRWLKIHIANLYAGGVDKLSYDGRVSFTENNLDDIFDSADRPLEGKRWWLEAEDP 1703
LGKSGLRWLKIH+AN+YAGGVDKLSY+GRV+FTEN+L+DIFDSADRPLEG+RWWL AEDP
Sbjct: 589 LGKSGLRWLKIHLANVYAGGVDKLSYEGRVAFTENHLEDIFDSADRPLEGRRWWLSAEDP 648
Query: 1702 FQCLAACINLSEALRSSSPETTISYMPVHQDGSCNGLQHYAALGRDKLGATAVNLVAGDK 1523
FQCLA CINLSEALRSSSPETTIS+MPVHQDGSCNGLQHYAALGRDKLGA AVNLVAG+K
Sbjct: 649 FQCLATCINLSEALRSSSPETTISHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVAGEK 708
Query: 1522 PADVYSGIAARVLEIMQQDAKRDPTNDADALRARLLVNQVNRKLVKQTVMTSVYGVTYIG 1343
PADVYSGIAARVL+IMQ+DA++DP + +ALRARLL++QV+RKLVKQTVMTSVYGVTYIG
Sbjct: 709 PADVYSGIAARVLDIMQRDAQKDPATEPNALRARLLISQVDRKLVKQTVMTSVYGVTYIG 768
Query: 1342 AREQIKKRLKER-GVVDDAELFGAACYAAKVTLTALGEMFQAARGIMSWLGECAKVIASE 1166
AR+QIK+RLKER + D+ E+F A+CYAAK TLTALGEMF+AAR IMSWLG+CAKVIASE
Sbjct: 769 ARDQIKRRLKERCAIADEGEVFSASCYAAKTTLTALGEMFEAARSIMSWLGDCAKVIASE 828
Query: 1165 NHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLD 986
NHPVRW TPLGLPVVQPYRKLGRHLIKTSLQVL+LQRETDKVMVKRQRTAFPPNFVHSLD
Sbjct: 829 NHPVRWNTPLGLPVVQPYRKLGRHLIKTSLQVLSLQRETDKVMVKRQRTAFPPNFVHSLD 888
Query: 985 GSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYERPILENLLESFQ 806
GSHMMMTA+AC+KAGLNFAGVHDSYWTHACDVDEMNRILREKFVELY PILENLLE FQ
Sbjct: 889 GSHMMMTAVACQKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYGMPILENLLEGFQ 948
Query: 805 QSFPTLSFPPLPERGDFDLNEVMKSPYFFN 716
+SFPTL+FPPLPERGDFDL EV++SPYFFN
Sbjct: 949 KSFPTLNFPPLPERGDFDLREVLESPYFFN 978
>ref|XP_002278535.1| PREDICTED: DNA-directed RNA polymerase 2, chloroplastic/mitochondrial
[Vitis vinifera] gi|298204431|emb|CBI16911.3| unnamed
protein product [Vitis vinifera]
Length = 1035
Score = 1360 bits (3519), Expect = 0.0
Identities = 709/1039 (68%), Positives = 805/1039 (77%), Gaps = 35/1039 (3%)
Frame = -1
Query: 3727 MFSSKPVIFSTNLNNKFDSFPSFNRPSEIFIYN--QTPIDMWRTFAKQVV--SARKFA-- 3566
M S K I S NL D SF +P+ F N + P MWR AK+ + + RK
Sbjct: 1 MSSGKTPILSANLGRDLDLIISFEKPTN-FRPNPLKKPTVMWRNIAKRAIPRAPRKCVYL 59
Query: 3565 -------KFSVNSFVETKFKPFELTRSGTFR--------FLEMGLCRNGELLWIKEESVV 3431
++S F + P E+ + GTF F EMG R GE+ +E++V
Sbjct: 60 DSQPLSRRYSFLGFSQDLIFP-EIMKFGTFEPSSCSSSGFSEMGFRRIGEIS-SREDAVG 117
Query: 3430 KD---CFRSPIGLN-FAWRGYXXXXXXXXXXXXXXXXXXV---QGLLKEINKREK----- 3287
+ C R+ +G + F + Y Q LL E+ K EK
Sbjct: 118 RPSFGCLRNQMGFSGFCPKSYASVAEAVSSTDVEEDVSASDEIQELLGEMKKEEKRQVNF 177
Query: 3286 KKYPKPRMVGGMGHTKYHMLRRRQVKIETEAWAQAAKEYKELLSDMCEHKLAPNLPYMKS 3107
K+ K +M GM +Y LRRRQVKIETEAW AAKEYKELL DMCE KLAPNLPYMKS
Sbjct: 178 KRREKLKMERGMEQGRYLRLRRRQVKIETEAWELAAKEYKELLMDMCEQKLAPNLPYMKS 237
Query: 3106 LFLGWFEPLKDKIVEEQDLCKQGKNRAAYAPQFDLLPADMMALITMHKLMGLLMTGGEHG 2927
LFLGWFEPL+D IV+EQ+LC+ GKN+AAYAP FD LPADMM++ITMHKL+GLLMTGGEHG
Sbjct: 238 LFLGWFEPLRDAIVKEQELCRLGKNKAAYAPYFDQLPADMMSVITMHKLVGLLMTGGEHG 297
Query: 2926 CARVVQASLQVGEAIEQEVRIYRFLXXXXXXXXXXXXXXXXXXXXXXXXXXXXKLRKRVT 2747
RVVQA+ +G+AIEQEVRI+ FL KLRK+VT
Sbjct: 298 STRVVQAACVIGDAIEQEVRIHNFL-EKTKRKKVGKDKNVEGGGFDPVIHEQEKLRKKVT 356
Query: 2746 TLMKKQKLHQVRQIVRRQDDLKPWGQAAQAKVGSRLIELLLQTAYIQPPVD-QIADTPPD 2570
LMKKQKLH RQIV+ D+ KPWG A+AKVGSRLIELL+QTAYIQPPVD Q+ADTPPD
Sbjct: 357 NLMKKQKLHAARQIVKGHDNSKPWGPEAKAKVGSRLIELLMQTAYIQPPVDNQLADTPPD 416
Query: 2569 IRPAFTHSLKTVSKDGQKSSRRFGVIECDPLVRQGLEKTARHMVIPYMPMLVPPINWTGY 2390
IRPAF H+ KTV ++ +K RRFGVIECDPLV++GLE+TARHMVIPY+PMLVPP+ WTGY
Sbjct: 417 IRPAFVHTFKTVMREAKKIGRRFGVIECDPLVKKGLERTARHMVIPYVPMLVPPLKWTGY 476
Query: 2389 EKGGYLFLPSYIMRTHGAKQQRQALKWTPKKQLEPVFEALNTLGNTKWRINKRVLGVIDR 2210
+KG +LFLPSY+MRTHGA+QQR+A+K P+ QLEPVFEALNTLGNTKWRINKR+ V+DR
Sbjct: 477 DKGAHLFLPSYVMRTHGARQQREAVKRAPRNQLEPVFEALNTLGNTKWRINKRLFDVVDR 536
Query: 2209 IWASGGRXXXXXXXXXXXXXXXXDTEDEAELXXXXXXXXXXXKENSERHSQRCDIELKLS 2030
IWA GG DTEDEA+L K NSERHSQRCDIELKL+
Sbjct: 537 IWAGGGCLADLVDRNDVPLPEKPDTEDEAQLRKWKWKVKSVKKANSERHSQRCDIELKLA 596
Query: 2029 VARKMKDESGFYYPHSVDFRGRAYPMHPYLNHLGSDLCRGALEFAEGRPLGKSGLRWLKI 1850
VARKMKDE GF+YPH++DFRGRAYPMHPYLNHLGSDLCRG LEFAEGRPLG SGL WLKI
Sbjct: 597 VARKMKDEDGFFYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGSSGLHWLKI 656
Query: 1849 HIANLYAGGVDKLSYDGRVSFTENNLDDIFDSADRPLEGKRWWLEAEDPFQCLAACINLS 1670
H+ANL+AGGVDKLS++GR++FTEN+LDDIFDSADRPLEGKRWWL AEDPFQ LAACINLS
Sbjct: 657 HLANLFAGGVDKLSHEGRITFTENHLDDIFDSADRPLEGKRWWLNAEDPFQFLAACINLS 716
Query: 1669 EALRSSSPETTISYMPVHQDGSCNGLQHYAALGRDKLGATAVNLVAGDKPADVYSGIAAR 1490
EALRSSSPETTIS++PVHQDGSCNGLQHYAALGRD+LGATAVNLVAG+KPADVYSGIAAR
Sbjct: 717 EALRSSSPETTISHIPVHQDGSCNGLQHYAALGRDQLGATAVNLVAGEKPADVYSGIAAR 776
Query: 1489 VLEIMQQDAKRDPTNDADALRARLLVNQVNRKLVKQTVMTSVYGVTYIGAREQIKKRLKE 1310
VL+IM++DA++DP DALRAR+L+NQV+RKLVKQTVMTSVYGVTYIGAR+QIK+RLKE
Sbjct: 777 VLDIMKRDAEKDPAIFPDALRARILINQVDRKLVKQTVMTSVYGVTYIGARDQIKRRLKE 836
Query: 1309 R-GVVDDAELFGAACYAAKVTLTALGEMFQAARGIMSWLGECAKVIASENHPVRWTTPLG 1133
R + DD ELFGAACYAAK+TLTALGEMFQAAR IMSWLG+CAK+IASEN PVRWTTPLG
Sbjct: 837 RNAIADDVELFGAACYAAKITLTALGEMFQAARSIMSWLGDCAKIIASENQPVRWTTPLG 896
Query: 1132 LPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAIAC 953
LPVVQPYRKLGRHLIKTSLQVLTLQRET+ +MVKRQRTAFPPNFVHSLDGSHMMMTAIAC
Sbjct: 897 LPVVQPYRKLGRHLIKTSLQVLTLQRETETIMVKRQRTAFPPNFVHSLDGSHMMMTAIAC 956
Query: 952 KKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYERPILENLLESFQQSFPTLSFPPL 773
KKAGLNFAGVHDSYWTHACDVDEMNR+LREKFV+LYE PILENLLESFQQSFP L FPPL
Sbjct: 957 KKAGLNFAGVHDSYWTHACDVDEMNRLLREKFVQLYETPILENLLESFQQSFPALEFPPL 1016
Query: 772 PERGDFDLNEVMKSPYFFN 716
PERGDFDL EV++SPYFFN
Sbjct: 1017 PERGDFDLREVLESPYFFN 1035
>emb|CAC95019.1| mitochondrial RNA polymerase [Nicotiana sylvestris]
Length = 1002
Score = 1327 bits (3434), Expect = 0.0
Identities = 653/875 (74%), Positives = 739/875 (84%), Gaps = 6/875 (0%)
Frame = -1
Query: 3322 QGLLKEINKREK----KKYPK-PRMVGGMGHTKYHMLRRRQVKIETEAWAQAAKEYKELL 3158
Q L++E+NK + PK P+ +GGMG KY++LRRRQ+K+ETEAW +AAKEY+ELL
Sbjct: 133 QELIEEMNKENEALKTNLQPKQPKTIGGMGVGKYNLLRRRQIKVETEAWEEAAKEYQELL 192
Query: 3157 SDMCEHKLAPNLPYMKSLFLGWFEPLKDKIVEEQDLCKQGKNRAAYAPQFDLLPADMMAL 2978
DMCE KLAPNLPYMKSLFLGWFEPL+D I EQ LC +GKNR AYAP FD LPA+MMA+
Sbjct: 193 MDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAV 252
Query: 2977 ITMHKLMGLLMTGGEHGCARVVQASLQVGEAIEQEVRIYRFLXXXXXXXXXXXXXXXXXX 2798
ITMHKLMGLLMTGG G ARVVQA+ +GEAIE E RI+RFL
Sbjct: 253 ITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEARIHRFL---EKTKKSNALSGDLED 309
Query: 2797 XXXXXXXXXXKLRKRVTTLMKKQKLHQVRQIVRRQDDLKPWGQAAQAKVGSRLIELLLQT 2618
+LRK+V LMKKQKL QVR+IV++QDD KPWGQ KVG RLI++L++T
Sbjct: 310 TPGDIMKERERLRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMET 369
Query: 2617 AYIQPPVDQIADTPPDIRPAFTHSLKTVSKDGQKSSRRFGVIECDPLVRQGLEKTARHMV 2438
AYIQPP DQ+ D PPDIRPAF H+LKTV + K SRR+GVI+CDPLVR+GL+KTARHMV
Sbjct: 370 AYIQPPNDQLDDCPPDIRPAFVHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHMV 427
Query: 2437 IPYMPMLVPPINWTGYEKGGYLFLPSYIMRTHGAKQQRQALKWTPKKQLEPVFEALNTLG 2258
IPYMPMLVPP +W GY+KG YLFLPSYIMRTHGAKQQR+A+K PKKQLEPVF+AL+TLG
Sbjct: 428 IPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLG 487
Query: 2257 NTKWRINKRVLGVIDRIWASGGRXXXXXXXXXXXXXXXXDTEDEAELXXXXXXXXXXXKE 2078
NTKWR+N++VLG++DRIWASGGR D EDEA++ KE
Sbjct: 488 NTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKE 547
Query: 2077 NSERHSQRCDIELKLSVARKMKDESGFYYPHSVDFRGRAYPMHPYLNHLGSDLCRGALEF 1898
N ERHSQRCDIELKL+VARKMKDE GFYYPH++DFRGRAYPMHPYLNHLGSDLCRG LEF
Sbjct: 548 NCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEF 607
Query: 1897 AEGRPLGKSGLRWLKIHIANLYAGGVDKLSYDGRVSFTENNLDDIFDSADRPLEGKRWWL 1718
AEGRPLGKSGLRWLKIH+AN+Y GGVDKLSY+GRV+F+EN+++DIFDSA+RPLEGKRWWL
Sbjct: 608 AEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRWWL 667
Query: 1717 EAEDPFQCLAACINLSEALRSSSPETTISYMPVHQDGSCNGLQHYAALGRDKLGATAVNL 1538
AEDPFQCLA CIN++EALRS SPET ISYMP+HQDGSCNGLQHYAALGRD LGA AVNL
Sbjct: 668 GAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDTLGAAAVNL 727
Query: 1537 VAGDKPADVYSGIAARVLEIMQQDAKRDPTNDADALRARLLVNQVNRKLVKQTVMTSVYG 1358
VAGDKPADVYSGIAARVL+IM++DA +DP ND + +RARLL+NQV+RKLVKQTVMTSVYG
Sbjct: 728 VAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYG 787
Query: 1357 VTYIGAREQIKKRLKERGVV-DDAELFGAACYAAKVTLTALGEMFQAARGIMSWLGECAK 1181
VTYIGAR+QIK+RLKERGV+ DD ELF AACYAAK TLTALGEMF+AAR IMSWLG+CAK
Sbjct: 788 VTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAK 847
Query: 1180 VIASENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNF 1001
+IA ENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQRETDKVMVKRQRTAFPPNF
Sbjct: 848 IIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNF 907
Query: 1000 VHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYERPILENL 821
VHSLDGSHMMMTAIACK++GL+FAGVHDSYWTHA DVD+MN+ILREKFVELY+ PILENL
Sbjct: 908 VHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENL 967
Query: 820 LESFQQSFPTLSFPPLPERGDFDLNEVMKSPYFFN 716
LESFQQSFP L FPPLPERGDFDL EV++SPYFFN
Sbjct: 968 LESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
>sp|Q93Y94.1|RPOT1_NICSY RecName: Full=DNA-directed RNA polymerase 1, mitochondrial; AltName:
Full=NsRpoT-A; AltName: Full=T7 bacteriophage-type single
subunit RNA polymerase 1; Flags: Precursor
gi|15824083|dbj|BAB69431.1| T7 bacteriophage-type single
subunit RNA polymerase [Nicotiana sylvestris]
Length = 1002
Score = 1326 bits (3431), Expect = 0.0
Identities = 652/875 (74%), Positives = 739/875 (84%), Gaps = 6/875 (0%)
Frame = -1
Query: 3322 QGLLKEINKREK----KKYPK-PRMVGGMGHTKYHMLRRRQVKIETEAWAQAAKEYKELL 3158
Q L++E+NK + PK P+ +GGMG KY++LRRRQ+K+ETEAW +AAKEY+ELL
Sbjct: 133 QELIEEMNKENEALKTNLQPKQPKTIGGMGVGKYNLLRRRQIKVETEAWEEAAKEYQELL 192
Query: 3157 SDMCEHKLAPNLPYMKSLFLGWFEPLKDKIVEEQDLCKQGKNRAAYAPQFDLLPADMMAL 2978
DMCE KLAPNLPYMKSLFLGWFEPL+D I EQ LC +GKNR AYAP FD LPA+MMA+
Sbjct: 193 MDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGAYAPFFDQLPAEMMAV 252
Query: 2977 ITMHKLMGLLMTGGEHGCARVVQASLQVGEAIEQEVRIYRFLXXXXXXXXXXXXXXXXXX 2798
ITMHKLMGLLMTGG G ARVVQA+ +GEAIE E RI+RFL
Sbjct: 253 ITMHKLMGLLMTGGGTGSARVVQAASHIGEAIEHEARIHRFL---EKTKKSNALSGDLED 309
Query: 2797 XXXXXXXXXXKLRKRVTTLMKKQKLHQVRQIVRRQDDLKPWGQAAQAKVGSRLIELLLQT 2618
++RK+V LMKKQKL QVR+IV++QDD KPWGQ KVG RLI++L++T
Sbjct: 310 TPGDIMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMET 369
Query: 2617 AYIQPPVDQIADTPPDIRPAFTHSLKTVSKDGQKSSRRFGVIECDPLVRQGLEKTARHMV 2438
AYIQPP DQ+ D PPDIRPAF H+LKTV + K SRR+GVI+CDPLVR+GL+KTARHMV
Sbjct: 370 AYIQPPNDQLDDCPPDIRPAFVHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHMV 427
Query: 2437 IPYMPMLVPPINWTGYEKGGYLFLPSYIMRTHGAKQQRQALKWTPKKQLEPVFEALNTLG 2258
IPYMPMLVPP +W GY+KG YLFLPSYIMRTHGAKQQR+A+K PKKQLEPVF+AL+TLG
Sbjct: 428 IPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLG 487
Query: 2257 NTKWRINKRVLGVIDRIWASGGRXXXXXXXXXXXXXXXXDTEDEAELXXXXXXXXXXXKE 2078
NTKWR+N++VLG++DRIWASGGR D EDEA++ KE
Sbjct: 488 NTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKE 547
Query: 2077 NSERHSQRCDIELKLSVARKMKDESGFYYPHSVDFRGRAYPMHPYLNHLGSDLCRGALEF 1898
N ERHSQRCDIELKL+VARKMKDE GFYYPH++DFRGRAYPMHPYLNHLGSDLCRG LEF
Sbjct: 548 NCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEF 607
Query: 1897 AEGRPLGKSGLRWLKIHIANLYAGGVDKLSYDGRVSFTENNLDDIFDSADRPLEGKRWWL 1718
AEGRPLGKSGLRWLKIH+AN+Y GGVDKLSY+GRV+F+EN+++DIFDSA+RPLEGKRWWL
Sbjct: 608 AEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRWWL 667
Query: 1717 EAEDPFQCLAACINLSEALRSSSPETTISYMPVHQDGSCNGLQHYAALGRDKLGATAVNL 1538
AEDPFQCLA CIN++EALRS SPET ISYMP+HQDGSCNGLQHYAALGRD LGA AVNL
Sbjct: 668 GAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDTLGAAAVNL 727
Query: 1537 VAGDKPADVYSGIAARVLEIMQQDAKRDPTNDADALRARLLVNQVNRKLVKQTVMTSVYG 1358
VAGDKPADVYSGIAARVL+IM++DA +DP ND + +RARLL+NQV+RKLVKQTVMTSVYG
Sbjct: 728 VAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYG 787
Query: 1357 VTYIGAREQIKKRLKERGVV-DDAELFGAACYAAKVTLTALGEMFQAARGIMSWLGECAK 1181
VTYIGAR+QIK+RLKERGV+ DD ELF AACYAAK TLTALGEMF+AAR IMSWLG+CAK
Sbjct: 788 VTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAK 847
Query: 1180 VIASENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNF 1001
+IA ENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQRETDKVMVKRQRTAFPPNF
Sbjct: 848 IIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNF 907
Query: 1000 VHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYERPILENL 821
VHSLDGSHMMMTAIACK++GL+FAGVHDSYWTHA DVD+MN+ILREKFVELY+ PILENL
Sbjct: 908 VHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENL 967
Query: 820 LESFQQSFPTLSFPPLPERGDFDLNEVMKSPYFFN 716
LESFQQSFP L FPPLPERGDFDL EV++SPYFFN
Sbjct: 968 LESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002
>dbj|BAB69063.1| T7 bacteriophage-type single subunit RNA polymerase [Nicotiana
sylvestris]
Length = 1002
Score = 1320 bits (3416), Expect = 0.0
Identities = 650/875 (74%), Positives = 737/875 (84%), Gaps = 6/875 (0%)
Frame = -1
Query: 3322 QGLLKEINKREK----KKYPK-PRMVGGMGHTKYHMLRRRQVKIETEAWAQAAKEYKELL 3158
Q L++E+NK + PK P+ +GGMG KY++LRRRQ+K+ETEAW +AAKEY+ELL
Sbjct: 133 QELIEEMNKENEALKTNLQPKQPKTIGGMGVGKYNLLRRRQIKVETEAWEEAAKEYQELL 192
Query: 3157 SDMCEHKLAPNLPYMKSLFLGWFEPLKDKIVEEQDLCKQGKNRAAYAPQFDLLPADMMAL 2978
DMCE KLAPNLPYMKSLFLGWFEPL+D I EQ LC +GKNR A AP FD LPA+MMA+
Sbjct: 193 MDMCEQKLAPNLPYMKSLFLGWFEPLRDAIAAEQKLCDEGKNRGACAPFFDQLPAEMMAV 252
Query: 2977 ITMHKLMGLLMTGGEHGCARVVQASLQVGEAIEQEVRIYRFLXXXXXXXXXXXXXXXXXX 2798
ITMHKLMG LMTGG G ARVVQA+ +GEAIE E RI+RFL
Sbjct: 253 ITMHKLMGWLMTGGGTGSARVVQAASHIGEAIEHEARIHRFL---EKTKKSNALSGDLED 309
Query: 2797 XXXXXXXXXXKLRKRVTTLMKKQKLHQVRQIVRRQDDLKPWGQAAQAKVGSRLIELLLQT 2618
++RK+V LMKKQKL QVR+IV++QDD KPWGQ KVG RLI++L++T
Sbjct: 310 TPGDIMKERERVRKKVKILMKKQKLQQVRKIVKQQDDEKPWGQDNLVKVGCRLIQILMET 369
Query: 2617 AYIQPPVDQIADTPPDIRPAFTHSLKTVSKDGQKSSRRFGVIECDPLVRQGLEKTARHMV 2438
AYIQPP DQ+ D PPDIRPAF H+LKTV + K SRR+GVI+CDPLVR+GL+KTARHMV
Sbjct: 370 AYIQPPNDQLDDCPPDIRPAFVHTLKTV--ETMKGSRRYGVIQCDPLVRKGLDKTARHMV 427
Query: 2437 IPYMPMLVPPINWTGYEKGGYLFLPSYIMRTHGAKQQRQALKWTPKKQLEPVFEALNTLG 2258
IPYMPMLVPP +W GY+KG YLFLPSYIMRTHGAKQQR+A+K PKKQLEPVF+AL+TLG
Sbjct: 428 IPYMPMLVPPQSWLGYDKGAYLFLPSYIMRTHGAKQQREAVKRVPKKQLEPVFQALDTLG 487
Query: 2257 NTKWRINKRVLGVIDRIWASGGRXXXXXXXXXXXXXXXXDTEDEAELXXXXXXXXXXXKE 2078
NTKWR+N++VLG++DRIWASGGR D EDEA++ KE
Sbjct: 488 NTKWRLNRKVLGIVDRIWASGGRLADLVDREDVPLPEEPDAEDEAQIRKWKWKVKGVKKE 547
Query: 2077 NSERHSQRCDIELKLSVARKMKDESGFYYPHSVDFRGRAYPMHPYLNHLGSDLCRGALEF 1898
N ERHSQRCDIELKL+VARKMKDE GFYYPH++DFRGRAYPMHPYLNHLGSDLCRG LEF
Sbjct: 548 NCERHSQRCDIELKLAVARKMKDEDGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEF 607
Query: 1897 AEGRPLGKSGLRWLKIHIANLYAGGVDKLSYDGRVSFTENNLDDIFDSADRPLEGKRWWL 1718
AEGRPLGKSGLRWLKIH+AN+Y GGVDKLSY+GRV+F+EN+++DIFDSA+RPLEGKRWWL
Sbjct: 608 AEGRPLGKSGLRWLKIHLANVYGGGVDKLSYEGRVAFSENHVEDIFDSAERPLEGKRWWL 667
Query: 1717 EAEDPFQCLAACINLSEALRSSSPETTISYMPVHQDGSCNGLQHYAALGRDKLGATAVNL 1538
AEDPFQCLA CIN++EALRS SPET ISYMP+HQDGSCNGLQHYAALGRD LGA AVNL
Sbjct: 668 GAEDPFQCLATCINIAEALRSPSPETAISYMPIHQDGSCNGLQHYAALGRDTLGAAAVNL 727
Query: 1537 VAGDKPADVYSGIAARVLEIMQQDAKRDPTNDADALRARLLVNQVNRKLVKQTVMTSVYG 1358
VAGDKPADVYSGIAARVL+IM++DA +DP ND + +RARLL+NQV+RKLVKQTVMTSVYG
Sbjct: 728 VAGDKPADVYSGIAARVLDIMKRDAAKDPANDPNVMRARLLINQVDRKLVKQTVMTSVYG 787
Query: 1357 VTYIGAREQIKKRLKERGVV-DDAELFGAACYAAKVTLTALGEMFQAARGIMSWLGECAK 1181
VTYIGAR+QIK+RLKERGV+ DD ELF AACYAAK TLTALGEMF+AAR IMSWLG+CAK
Sbjct: 788 VTYIGARDQIKRRLKERGVIEDDNELFAAACYAAKTTLTALGEMFEAARSIMSWLGDCAK 847
Query: 1180 VIASENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNF 1001
+IA ENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQ+LTLQRETDKVMVKRQRTAFPPNF
Sbjct: 848 IIAMENHPVRWTTPLGLPVVQPYRKLGRHLIKTSLQILTLQRETDKVMVKRQRTAFPPNF 907
Query: 1000 VHSLDGSHMMMTAIACKKAGLNFAGVHDSYWTHACDVDEMNRILREKFVELYERPILENL 821
VHSLDGSHMMMTAIACK++GL+FAGVHDSYWTHA DVD+MN+ILREKFVELY+ PILENL
Sbjct: 908 VHSLDGSHMMMTAIACKESGLSFAGVHDSYWTHASDVDQMNKILREKFVELYDAPILENL 967
Query: 820 LESFQQSFPTLSFPPLPERGDFDLNEVMKSPYFFN 716
LESFQQSFP L FPPLPERGDFDL EV++SPYFFN
Sbjct: 968 LESFQQSFPDLQFPPLPERGDFDLREVLESPYFFN 1002