BLASTX nr result
ID: Coptis23_contig00001076
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00001076
(1487 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002263798.1| PREDICTED: KH domain-containing protein At1g... 384 e-108
ref|NP_001055572.1| Os05g0419500 [Oryza sativa Japonica Group] g... 380 e-106
ref|XP_002328717.1| predicted protein [Populus trichocarpa] gi|2... 367 e-106
ref|XP_002526434.1| nucleic acid binding protein, putative [Rici... 369 e-105
ref|NP_001045029.1| Os01g0886300 [Oryza sativa Japonica Group] g... 372 e-103
>ref|XP_002263798.1| PREDICTED: KH domain-containing protein At1g09660 [Vitis vinifera]
gi|297739511|emb|CBI29693.3| unnamed protein product
[Vitis vinifera]
Length = 295
Score = 384 bits (985), Expect(2) = e-108
Identities = 192/261 (73%), Positives = 214/261 (81%), Gaps = 4/261 (1%)
Frame = -2
Query: 1261 RYLAELLAERQKLAPFMQILPLCTRLLNQEIIRASGLVPNPNFVDHDRIEHESPLRSTVQ 1082
RYLAELLAE+QKL PFMQILP C+RLLNQEI R S + PN FVD +RIEH+SP RS Q
Sbjct: 34 RYLAELLAEKQKLGPFMQILPQCSRLLNQEIRRLSAIAPNQGFVDLERIEHDSPFRSLGQ 93
Query: 1081 HSNGGLMDLEGWSVMQAEENGFLQRMGAFQTPGMGWHGSPGFQNSPVLKKVIRLDVPVDK 902
H NGG MDLEGW MQ EENG L+RM FQ +GWH +PG +PV+K+VIRLDVPVDK
Sbjct: 94 HPNGGPMDLEGWPAMQTEENGPLRRMAPFQASSLGWHRAPGIPTTPVVKRVIRLDVPVDK 153
Query: 901 FPNFNFVGRLLGPRGNSLKRVEATTQCRVYIRGRGSVKDSVKEEKLRDKPGYEHLNEPLH 722
+PN+NFVGR+LGPRGNSLKRVEA T+CRVYIRG+GSVKD+VKEEKL+DKPGYEHLNEPLH
Sbjct: 154 YPNYNFVGRILGPRGNSLKRVEAMTECRVYIRGQGSVKDAVKEEKLKDKPGYEHLNEPLH 213
Query: 721 VLVEAEFPADLIEPRLNQAIAILEDLLKPVDESLDHYKKQQLRELAMINGTLREE----X 554
VLVEAEF D+I RL QA+AILE+LLKPVDESLD YKKQQLRELAM+NGTLREE
Sbjct: 214 VLVEAEFSEDIINSRLEQAVAILENLLKPVDESLDQYKKQQLRELAMLNGTLREESPSMS 273
Query: 553 XXXXXXXXPFNTAGMKRAKTG 491
PFNTAGMKRAKTG
Sbjct: 274 PSMSPSMSPFNTAGMKRAKTG 294
Score = 37.7 bits (86), Expect(2) = e-108
Identities = 18/25 (72%), Positives = 19/25 (76%)
Frame = -1
Query: 1406 MGDRIPPGSYFQYSPSGLHGRASPH 1332
M DR P GS+FQY PSGLH ASPH
Sbjct: 1 MDDRRPHGSFFQYPPSGLH--ASPH 23
>ref|NP_001055572.1| Os05g0419500 [Oryza sativa Japonica Group] gi|53982667|gb|AAV25646.1|
unknown protein [Oryza sativa Japonica Group]
gi|113579123|dbj|BAF17486.1| Os05g0419500 [Oryza sativa
Japonica Group] gi|215704313|dbj|BAG93747.1| unnamed
protein product [Oryza sativa Japonica Group]
gi|218196817|gb|EEC79244.1| hypothetical protein
OsI_19999 [Oryza sativa Indica Group]
gi|222631627|gb|EEE63759.1| hypothetical protein
OsJ_18578 [Oryza sativa Japonica Group]
Length = 291
Score = 380 bits (976), Expect(2) = e-106
Identities = 191/261 (73%), Positives = 216/261 (82%), Gaps = 4/261 (1%)
Frame = -2
Query: 1261 RYLAELLAERQKLAPFMQILPLCTRLLNQEIIRASGLVPNPNFVDHDRIEHESPLRSTVQ 1082
RYLAELLAERQKLAPFMQ+LP C RLLNQEI+RAS L PNPNFV+ +R+ H SPLR T
Sbjct: 37 RYLAELLAERQKLAPFMQVLPFCNRLLNQEILRASSLPPNPNFVEPERVNHGSPLRLTGH 96
Query: 1081 HSNGGLMDLEGWSVMQAEENGFLQRMGAFQTPGMGWHGSPGFQNSPVLKKVIRLDVPVDK 902
NG MDLEGWS MQ E MG Q+P MGW+ +PG SPV+KKV+R+DVPVDK
Sbjct: 97 PMNGQPMDLEGWSGMQTE-------MGVLQSPSMGWNVAPGVAGSPVVKKVVRIDVPVDK 149
Query: 901 FPNFNFVGRLLGPRGNSLKRVEATTQCRVYIRGRGSVKDSVKEEKLRDKPGYEHLNEPLH 722
+PN+NFVGRLLGPRGNSLKRVEATTQCRVYIRGRGSVKDSVKE+KLRDKPGYEHLN+PLH
Sbjct: 150 YPNYNFVGRLLGPRGNSLKRVEATTQCRVYIRGRGSVKDSVKEDKLRDKPGYEHLNDPLH 209
Query: 721 VLVEAEFPADLIEPRLNQAIAILEDLLKPVDESLDHYKKQQLRELAMINGTLREE----X 554
VLVEAEFP+D+++ RLNQA+AILEDLLKPVDES+D+YKKQQLRELA++NGTLREE
Sbjct: 210 VLVEAEFPSDIVDVRLNQAVAILEDLLKPVDESMDYYKKQQLRELAILNGTLREESPSPH 269
Query: 553 XXXXXXXXPFNTAGMKRAKTG 491
PFN+ GMKRAKTG
Sbjct: 270 LSPSPSVSPFNSTGMKRAKTG 290
Score = 33.1 bits (74), Expect(2) = e-106
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = -1
Query: 1406 MGDRIPPGSYFQYSPSGLHGRASPH 1332
M +RIPP ++FQ+ PSG H +SPH
Sbjct: 1 MDERIPPPAFFQFLPSGAH--SSPH 23
>ref|XP_002328717.1| predicted protein [Populus trichocarpa] gi|222839015|gb|EEE77366.1|
predicted protein [Populus trichocarpa]
Length = 294
Score = 367 bits (941), Expect(2) = e-106
Identities = 187/261 (71%), Positives = 205/261 (78%), Gaps = 4/261 (1%)
Frame = -2
Query: 1261 RYLAELLAERQKLAPFMQILPLCTRLLNQEIIRASGLVPNPNFVDHDRIEHESPLRSTVQ 1082
RYLAEL AE+ KL PF+Q+LP C RLLNQEI RAS N VDH+R EHESP RS Q
Sbjct: 35 RYLAELFAEKHKLGPFVQVLPNCCRLLNQEIRRASAC--NQGLVDHERYEHESPFRSLGQ 92
Query: 1081 HSNGGLMDLEGWSVMQAEENGFLQRMGAFQTPGMGWHGSPGFQNSPVLKKVIRLDVPVDK 902
HSNG MDLE WS M EENG LQRM +F MGW G PG +PV+K+VIRLDVPVDK
Sbjct: 93 HSNGRTMDLEAWSAMPTEENGHLQRMASFPAASMGWPGVPGIPITPVVKRVIRLDVPVDK 152
Query: 901 FPNFNFVGRLLGPRGNSLKRVEATTQCRVYIRGRGSVKDSVKEEKLRDKPGYEHLNEPLH 722
+P++NFVGR+LGPRGNSLKRVEA T CRVYIRG+GSVKDS+KEEKL+DKPGYEHLNEPLH
Sbjct: 153 YPSYNFVGRILGPRGNSLKRVEALTDCRVYIRGKGSVKDSLKEEKLKDKPGYEHLNEPLH 212
Query: 721 VLVEAEFPADLIEPRLNQAIAILEDLLKPVDESLDHYKKQQLRELAMINGTLREE----X 554
VLVEAEFP D+I RL AI ILE LLKPVDESLDHYKKQQLRELA++NGTLREE
Sbjct: 213 VLVEAEFPEDIINARLEHAITILESLLKPVDESLDHYKKQQLRELALLNGTLREESPSMS 272
Query: 553 XXXXXXXXPFNTAGMKRAKTG 491
PFNTAGMKRAKTG
Sbjct: 273 PSMSPSMSPFNTAGMKRAKTG 293
Score = 45.8 bits (107), Expect(2) = e-106
Identities = 20/25 (80%), Positives = 22/25 (88%)
Frame = -1
Query: 1406 MGDRIPPGSYFQYSPSGLHGRASPH 1332
MG+RIPPGSYFQY PSG+H ASPH
Sbjct: 1 MGERIPPGSYFQYPPSGVH-HASPH 24
>ref|XP_002526434.1| nucleic acid binding protein, putative [Ricinus communis]
gi|223534214|gb|EEF35929.1| nucleic acid binding protein,
putative [Ricinus communis]
Length = 295
Score = 369 bits (946), Expect(2) = e-105
Identities = 186/260 (71%), Positives = 208/260 (80%), Gaps = 4/260 (1%)
Frame = -2
Query: 1261 RYLAELLAERQKLAPFMQILPLCTRLLNQEIIRASGLVPNPNFVDHDRIEHESPLRSTVQ 1082
RYLAELLAERQKL PF+Q+LPLC+RLLNQEI R SG FVDH+R EHESP RS Q
Sbjct: 36 RYLAELLAERQKLVPFIQVLPLCSRLLNQEIRRVSGFTQG--FVDHERYEHESPYRSLGQ 93
Query: 1081 HSNGGLMDLEGWSVMQAEENGFLQRMGAFQTPGMGWHGSPGFQNSPVLKKVIRLDVPVDK 902
+NG MDLE W M EENG LQRM +FQ MGW G PG +PV+KKVIRLDVPVD
Sbjct: 94 QTNGRPMDLEAWPRMPTEENGHLQRMASFQAASMGWPGVPGIPTTPVIKKVIRLDVPVDD 153
Query: 901 FPNFNFVGRLLGPRGNSLKRVEATTQCRVYIRGRGSVKDSVKEEKLRDKPGYEHLNEPLH 722
+P++NFVGR+LGPRGNSLKRVEA T+CRVYIRG+GSVKDSVKEEKL+DKPGYEHLNEPLH
Sbjct: 154 YPSYNFVGRILGPRGNSLKRVEAMTECRVYIRGKGSVKDSVKEEKLKDKPGYEHLNEPLH 213
Query: 721 VLVEAEFPADLIEPRLNQAIAILEDLLKPVDESLDHYKKQQLRELAMINGTLREE----X 554
VLVEAEFP D+++ R+ A+ IL+ LLKPVDESLDHYKKQQLRELAM+NGTLREE
Sbjct: 214 VLVEAEFPEDIVDARVEHAVTILQSLLKPVDESLDHYKKQQLRELAMLNGTLREESPSMS 273
Query: 553 XXXXXXXXPFNTAGMKRAKT 494
PFNTAGMKRAKT
Sbjct: 274 PSMSPSMSPFNTAGMKRAKT 293
Score = 42.7 bits (99), Expect(2) = e-105
Identities = 19/26 (73%), Positives = 22/26 (84%)
Frame = -1
Query: 1409 MMGDRIPPGSYFQYSPSGLHGRASPH 1332
MMG+RI PGS+FQY PSG H +ASPH
Sbjct: 1 MMGERITPGSFFQYPPSGAH-QASPH 25
>ref|NP_001045029.1| Os01g0886300 [Oryza sativa Japonica Group]
gi|56784311|dbj|BAD82237.1| QUAKING isoform 5-like [Oryza
sativa Japonica Group] gi|56785233|dbj|BAD82121.1|
QUAKING isoform 5-like [Oryza sativa Japonica Group]
gi|113534560|dbj|BAF06943.1| Os01g0886300 [Oryza sativa
Japonica Group] gi|125528639|gb|EAY76753.1| hypothetical
protein OsI_04709 [Oryza sativa Indica Group]
gi|125572899|gb|EAZ14414.1| hypothetical protein
OsJ_04338 [Oryza sativa Japonica Group]
gi|215694363|dbj|BAG89356.1| unnamed protein product
[Oryza sativa Japonica Group]
Length = 290
Score = 372 bits (955), Expect(2) = e-103
Identities = 190/259 (73%), Positives = 211/259 (81%), Gaps = 2/259 (0%)
Frame = -2
Query: 1261 RYLAELLAERQKLAPFMQILPLCTRLLNQEIIRASGLVPNPNFVDHDRIEHESPLRSTVQ 1082
RYLAELLAERQKLAPF+Q+LP CTRLLNQEI+RAS L PN NFVD +RIEH SPLR
Sbjct: 37 RYLAELLAERQKLAPFVQVLPFCTRLLNQEILRASSLPPNHNFVDPERIEHGSPLRLPGL 96
Query: 1081 HSNGGLMDLEGWSVMQAEENGFLQRMGAFQTPGMGWHGSPGFQNSPVLKKVIRLDVPVDK 902
NG MDLEGWS MQ E M Q MGW+G P +PV+KKV+RLDVPVDK
Sbjct: 97 PVNGQPMDLEGWSGMQTEN------MRVLQASSMGWNGPPAITGTPVVKKVVRLDVPVDK 150
Query: 901 FPNFNFVGRLLGPRGNSLKRVEATTQCRVYIRGRGSVKDSVKEEKLRDKPGYEHLNEPLH 722
+PN+NFVGRLLGPRGNSLKRVEA+TQCRVYIRGRGSVKDSVKE+KLRDKPGYEHLNEPLH
Sbjct: 151 YPNYNFVGRLLGPRGNSLKRVEASTQCRVYIRGRGSVKDSVKEDKLRDKPGYEHLNEPLH 210
Query: 721 VLVEAEFPADLIEPRLNQAIAILEDLLKPVDESLDHYKKQQLRELAMINGTLREE--XXX 548
VLVEAEFPAD+I+ RLNQA+ ILEDLLKP+DES+D+YKKQQLRELA++NGTLREE
Sbjct: 211 VLVEAEFPADIIDTRLNQAVTILEDLLKPIDESMDYYKKQQLRELAILNGTLREESPSPH 270
Query: 547 XXXXXXPFNTAGMKRAKTG 491
PFN+ GMKRAKTG
Sbjct: 271 LSPSVSPFNSTGMKRAKTG 289
Score = 32.7 bits (73), Expect(2) = e-103
Identities = 16/25 (64%), Positives = 18/25 (72%)
Frame = -1
Query: 1406 MGDRIPPGSYFQYSPSGLHGRASPH 1332
M DRIPP S QYSPS +H +SPH
Sbjct: 1 MDDRIPPPSPLQYSPSPVH--SSPH 23