BLASTX nr result

ID: Coptis23_contig00001046 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00001046
         (608 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004139862.1| PREDICTED: uncharacterized protein LOC101202...    82   1e-13
ref|XP_002326011.1| predicted protein [Populus trichocarpa] gi|2...    78   1e-12
ref|XP_003555422.1| PREDICTED: uncharacterized protein LOC100809...    78   1e-12
ref|NP_174686.1| protein FAB1D [Arabidopsis thaliana] gi|5091620...    71   1e-10
ref|XP_003535550.1| PREDICTED: uncharacterized protein LOC100815...    71   1e-10

>ref|XP_004139862.1| PREDICTED: uncharacterized protein LOC101202759 [Cucumis sativus]
           gi|449525806|ref|XP_004169907.1| PREDICTED:
           uncharacterized LOC101202759 [Cucumis sativus]
          Length = 1517

 Score = 81.6 bits (200), Expect = 1e-13
 Identities = 58/139 (41%), Positives = 79/139 (56%), Gaps = 20/139 (14%)
 Frame = -1

Query: 596 ILLKGAHSDALKKIKSVVHSAVVLAYHLILEASFRVDQRAMFLTI------CSAVDDECS 435
           ILLKGAHSD LK++K VV  AVV+A+HLILE SF VDQRAMF TI       +A  D  S
Sbjct: 387 ILLKGAHSDELKRVKIVVQCAVVMAFHLILETSFIVDQRAMFATIPFGGVPATASSDRQS 446

Query: 434 --QEHLPNTCKNAYSANDLSEIASSLTMDIPISEGTSCNSNMDMEQN------------S 297
             +   PN  K A SA+D SE  +++ +     E TS  SNM++ +             +
Sbjct: 447 PLEPRSPNVGK-AESASDKSEQPTNICISRGSHEETSTGSNMELAEKLIMSSEPEPYNPA 505

Query: 296 AFTGFSNNITSYEKESGQN 240
            F+GFS+   S ++  G++
Sbjct: 506 IFSGFSSISDSLKRVMGES 524


>ref|XP_002326011.1| predicted protein [Populus trichocarpa] gi|222862886|gb|EEF00393.1|
           predicted protein [Populus trichocarpa]
          Length = 1387

 Score = 78.2 bits (191), Expect = 1e-12
 Identities = 58/150 (38%), Positives = 83/150 (55%), Gaps = 18/150 (12%)
 Frame = -1

Query: 608 LGSTILLKGAHSDALKKIKSVVHSAVVLAYHLILEASFRVDQRAMF-------LTICSAV 450
           LG TILLKG+HSD LK++K VV  AV++AYH+ILE SF VD +AMF       +   S++
Sbjct: 305 LGCTILLKGSHSDELKRVKYVVQFAVIMAYHMILETSFLVDWKAMFSSEIFGGVVNTSSI 364

Query: 449 DDECSQEHLPNTCKNAYSANDLSEIASSLTMDIPISEG----TSCNSNMDME--QNSAFT 288
           D   S       C         +E  SS+ +DIPIS G     S N N+ +E  + + F+
Sbjct: 365 DQHSSALETRIPCVE----ESTTETGSSI-IDIPISNGFHEEGSHNINIGLEGYEPAVFS 419

Query: 287 GFSNNITSYEKESGQNKHI-----HRNMSD 213
           GFS+   S +K  G +  +     +R++SD
Sbjct: 420 GFSSLSASLKKVMGDSFPLVSSSPYRSLSD 449


>ref|XP_003555422.1| PREDICTED: uncharacterized protein LOC100809696 [Glycine max]
          Length = 1594

 Score = 77.8 bits (190), Expect = 1e-12
 Identities = 64/172 (37%), Positives = 84/172 (48%), Gaps = 1/172 (0%)
 Frame = -1

Query: 608 LGSTILLKGAHSDALKKIKSVVHSAVVLAYHLILEASFRVDQRAMFLTICSAVDDECSQE 429
           LG TILLKG HSD LK+IK V+  AVV+AYHLILE SF VDQ+AMF TI +         
Sbjct: 461 LGCTILLKGTHSDELKRIKCVIRCAVVMAYHLILETSFLVDQKAMFSTIPAV-------- 512

Query: 428 HLPNTCKNAYSANDLSEIASSLTMDIPISEGTSCNSNMDMEQNSAFTGF-SNNITSYEKE 252
                            +A  L  D    +  S NS++   + SA  G  S +I      
Sbjct: 513 ----------------SVADILPTDKKSCDSASINSSIPSLEYSAENGIVSTDIPICSGL 556

Query: 251 SGQNKHIHRNMSDDIDDYQLESPRDEAVPTVHLGSVLSAISASVKKVVRDHF 96
             +N +     S++   +  E P + AV      S  SAIS+S+KKV+ D F
Sbjct: 557 HEKNTNGLNLGSEEFSQFSCE-PYNPAV-----FSGFSAISSSLKKVMGDSF 602


>ref|NP_174686.1| protein FAB1D [Arabidopsis thaliana]
           gi|5091620|gb|AAD39608.1|AC007454_7 Contains similarity
           to gi|836774 FAB1 protein from Saccharomyces cerevisiae
           genome gb|D50617 [Arabidopsis thaliana]
           gi|332193569|gb|AEE31690.1| protein FAB1D [Arabidopsis
           thaliana]
          Length = 1456

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 46/122 (37%), Positives = 65/122 (53%), Gaps = 5/122 (4%)
 Frame = -1

Query: 608 LGSTILLKGAHSDALKKIKSVVHSAVVLAYHLILEASFRVDQRAMFLTICSAVDDECSQE 429
           LG TILLKG HS+ LKK+K VV  + +LAYHL+LEASF  D+  MF TI +     C  E
Sbjct: 387 LGCTILLKGCHSERLKKVKEVVQYSFILAYHLMLEASFLADRHTMFSTIFAKEATSCVVE 446

Query: 428 HLPNTCKNAYSANDLSEIASSLTMDIPISEG-----TSCNSNMDMEQNSAFTGFSNNITS 264
            + N     +S +     + S  +DIP+S G        N   D E+   +    +++ S
Sbjct: 447 -IEN-----FSPSPSPRESPSEAVDIPVSNGFDEQTIQINGEADGEKVGTWESDGDHVFS 500

Query: 263 YE 258
           +E
Sbjct: 501 HE 502


>ref|XP_003535550.1| PREDICTED: uncharacterized protein LOC100815340 [Glycine max]
          Length = 1541

 Score = 71.2 bits (173), Expect = 1e-10
 Identities = 56/141 (39%), Positives = 73/141 (51%), Gaps = 22/141 (15%)
 Frame = -1

Query: 596 ILLKGAHSDALKKIKSVVHSAVVLAYHLILEASFRVDQRAMFLTICSAVDDECSQEHLPN 417
           ILLKG HSD LK+IK V+  AVV+AYHLILE SF VDQ+AMF TI +        + LP 
Sbjct: 405 ILLKGTHSDELKRIKCVMRCAVVMAYHLILETSFLVDQKAMFSTIPAV----SVADILPT 460

Query: 416 TCKNAYSANDLSEIAS--------SLTMDIPISEGTSCNS----NMDMEQNS-------- 297
             K+   A+  S I S         ++ DIPI  G   N+    N+  E+ S        
Sbjct: 461 DKKSCDLASTNSSIPSLEYSAENGIVSTDIPICNGLHENNINGLNLGSEEFSPFSCEPYN 520

Query: 296 --AFTGFSNNITSYEKESGQN 240
              F+GFS   +S +K  G +
Sbjct: 521 PAVFSGFSAISSSLKKVMGDS 541


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