BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00001002
         (1022 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003523375.1| PREDICTED: splicing factor 3A subunit 3-like...   464   e-128
ref|XP_002268036.2| PREDICTED: splicing factor 3A subunit 3-like...   464   e-128
ref|XP_002317774.1| predicted protein [Populus trichocarpa] gi|2...   464   e-128
ref|XP_003526707.1| PREDICTED: splicing factor 3A subunit 3-like...   461   e-127
ref|XP_004145709.1| PREDICTED: splicing factor 3A subunit 3-like...   459   e-127

>ref|XP_003523375.1| PREDICTED: splicing factor 3A subunit 3-like [Glycine max]
          Length = 509

 Score =  464 bits (1194), Expect = e-128
 Identities = 230/341 (67%), Positives = 278/341 (81%), Gaps = 1/341 (0%)
 Frame = -3

Query: 1020 TRSSHEEVERLERLIVKDLQKEPASSRERLFQNHRVRNMIDSITSTTHKLVEIYEDKDSA 841
            TR++HEEVERLERLIVK+LQ +PAS++ERL+Q+HRVRNMID+ITSTT KL+ IYED D+A
Sbjct: 9    TRAAHEEVERLERLIVKELQNDPASNKERLYQSHRVRNMIDTITSTTEKLIGIYEDSDNA 68

Query: 840  RKDEIAALGGQSGN-TNVFGAFYDRLKEIREYHRRHPSARVIDASEDYDELLKDEPLVEF 664
            RKDEIAALGGQ+    NVF AFYDRLKEIREYHR+HP ARV+DA++DY+ LL +E  +EF
Sbjct: 69   RKDEIAALGGQTATGINVFSAFYDRLKEIREYHRKHPVARVVDANDDYETLLNEELQIEF 128

Query: 663  SGEEGYGRYFDMHELYNEYINSKFGKLVEYSTYLDIFSQTHEIPRNLKLTGAXXXXXXXX 484
            SGEE  GRY D+HELY +Y+NSKFG+ +EYS YLD+FS T +IPR +K+T          
Sbjct: 129  SGEEALGRYLDLHELYYQYVNSKFGEPIEYSAYLDVFSDTDKIPRKMKMTRQYREYLANL 188

Query: 483  XXXLIHFFQRIEPLQDLDRFFSKVESEFEELWANGNVEGWENKGLENGHISSHEALIDLD 304
               L++FFQR EPLQDLDR  SKV +EFEE WA G V+GWEN   ENGH+ +  A IDLD
Sbjct: 189  LEYLLYFFQRTEPLQDLDRILSKVTTEFEESWAVGKVQGWENDNQENGHVLAEHATIDLD 248

Query: 303  YYSTVEELMEVGPGKLKEALSALGLKSGGTVKERAERLFLTKHTPLEQLDKKHFLKGSCG 124
            YYSTVEELMEVGP +LKEAL+ALGLK+GGTV++RAERLFLTKHTPLE+LDKKHF KG+ G
Sbjct: 249  YYSTVEELMEVGPERLKEALAALGLKTGGTVQQRAERLFLTKHTPLEKLDKKHFAKGARG 308

Query: 123  VKQNGTAAVSERTGDLKNIALMEAKLKRLCEDLLNEIIVQT 1
            V++NG AAVS+  G+ K IALMEAK+ +LC DLL E I +T
Sbjct: 309  VEKNGVAAVSQEDGNSKEIALMEAKMTKLC-DLLEETIART 348


>ref|XP_002268036.2| PREDICTED: splicing factor 3A subunit 3-like [Vitis vinifera]
            gi|302144037|emb|CBI23142.3| unnamed protein product
            [Vitis vinifera]
          Length = 509

 Score =  464 bits (1194), Expect = e-128
 Identities = 230/341 (67%), Positives = 280/341 (82%), Gaps = 1/341 (0%)
 Frame = -3

Query: 1020 TRSSHEEVERLERLIVKDLQKEPASSRERLFQNHRVRNMIDSITSTTHKLVEIYEDKDSA 841
            TR+ HEE+ERLERLIVKDLQ EPASS++RLFQ+HRVRNMID+IT TT KL++IYEDKD+A
Sbjct: 9    TRAGHEEIERLERLIVKDLQNEPASSKDRLFQSHRVRNMIDTITITTEKLIDIYEDKDNA 68

Query: 840  RKDEIAALGGQSGN-TNVFGAFYDRLKEIREYHRRHPSARVIDASEDYDELLKDEPLVEF 664
            RKDEIAALGGQ+   TNVF AFYDRLKEIREYHR+H +ARV+DA+E+Y+ELLK+E  +EF
Sbjct: 69   RKDEIAALGGQTATGTNVFSAFYDRLKEIREYHRKHQAARVVDANEEYEELLKEELRIEF 128

Query: 663  SGEEGYGRYFDMHELYNEYINSKFGKLVEYSTYLDIFSQTHEIPRNLKLTGAXXXXXXXX 484
             GEE +GRY D+HELYNEYINSKFG+ +EYS Y+++FS+  +IPR LKLT          
Sbjct: 129  RGEEAFGRYLDLHELYNEYINSKFGEHIEYSAYVEVFSEPQKIPRKLKLTRQYREYLENL 188

Query: 483  XXXLIHFFQRIEPLQDLDRFFSKVESEFEELWANGNVEGWENKGLENGHISSHEALIDLD 304
               LI+FF+R EPLQDLDR F+K+ ++FEE WANG VEGWEN+  ENG++ +  A IDLD
Sbjct: 189  LEYLIYFFERTEPLQDLDRIFTKLATDFEEQWANGMVEGWENESQENGNVPTQHAAIDLD 248

Query: 303  YYSTVEELMEVGPGKLKEALSALGLKSGGTVKERAERLFLTKHTPLEQLDKKHFLKGSCG 124
            YYSTVEE+MEVGP  LKEAL+ALGLK+GGTV++RAERLFLTKHTPLEQLD+KHF KGS  
Sbjct: 249  YYSTVEEVMEVGPEMLKEALAALGLKTGGTVQQRAERLFLTKHTPLEQLDQKHFAKGSRR 308

Query: 123  VKQNGTAAVSERTGDLKNIALMEAKLKRLCEDLLNEIIVQT 1
             +QNGT A  +     K IAL+EAKL+++CE LL E IV+T
Sbjct: 309  SEQNGTPAAPKEADSSKEIALLEAKLRKICE-LLYETIVRT 348


>ref|XP_002317774.1| predicted protein [Populus trichocarpa] gi|222858447|gb|EEE95994.1|
            predicted protein [Populus trichocarpa]
          Length = 509

 Score =  464 bits (1193), Expect = e-128
 Identities = 231/341 (67%), Positives = 279/341 (81%), Gaps = 1/341 (0%)
 Frame = -3

Query: 1020 TRSSHEEVERLERLIVKDLQKEPASSRERLFQNHRVRNMIDSITSTTHKLVEIYEDKDSA 841
            TR+SHEEVERLERLIVKDLQ EPA++++RLFQ+HRVRNMID+I +TT KLVE+YEDKD+A
Sbjct: 9    TRASHEEVERLERLIVKDLQNEPANNKDRLFQSHRVRNMIDNIITTTEKLVEVYEDKDNA 68

Query: 840  RKDEIAALGGQSG-NTNVFGAFYDRLKEIREYHRRHPSARVIDASEDYDELLKDEPLVEF 664
            R+DEIAALGGQ+   TNVF AFYDRLKEIREYHRRHP+ARV+DA+EDY+ +LK+EP++EF
Sbjct: 69   RRDEIAALGGQTAMGTNVFSAFYDRLKEIREYHRRHPAARVVDANEDYEAMLKEEPVIEF 128

Query: 663  SGEEGYGRYFDMHELYNEYINSKFGKLVEYSTYLDIFSQTHEIPRNLKLTGAXXXXXXXX 484
            +GEE +G+Y DMHELYN+Y N KF K +EYSTYLDIFSQ + +P  LK +          
Sbjct: 129  TGEEAFGKYLDMHELYNQYNNLKFEKPIEYSTYLDIFSQPNIVPHKLKFSRRYREYMENL 188

Query: 483  XXXLIHFFQRIEPLQDLDRFFSKVESEFEELWANGNVEGWENKGLENGHISSHEALIDLD 304
               L++FFQR EPLQDLDR FSKV +EFEE W N  V+GWE    ENGH+S+   +IDLD
Sbjct: 189  LEYLVYFFQRTEPLQDLDRIFSKVTTEFEEQWENDAVQGWEKTSQENGHLSADHTVIDLD 248

Query: 303  YYSTVEELMEVGPGKLKEALSALGLKSGGTVKERAERLFLTKHTPLEQLDKKHFLKGSCG 124
            +YSTVEEL EVGP KLKEAL+ALGLKSGGTV++RAERLFLTK TPLE+LDKKHF+KGS G
Sbjct: 249  FYSTVEELKEVGPEKLKEALAALGLKSGGTVQQRAERLFLTKDTPLEKLDKKHFVKGSRG 308

Query: 123  VKQNGTAAVSERTGDLKNIALMEAKLKRLCEDLLNEIIVQT 1
             + NG AA S+   + K IALMEAK+ +LC DLL+E IV+T
Sbjct: 309  SEPNGGAATSKEVDNSKEIALMEAKINKLC-DLLDETIVRT 348


>ref|XP_003526707.1| PREDICTED: splicing factor 3A subunit 3-like [Glycine max]
          Length = 509

 Score =  461 bits (1186), Expect = e-127
 Identities = 225/341 (65%), Positives = 276/341 (80%), Gaps = 1/341 (0%)
 Frame = -3

Query: 1020 TRSSHEEVERLERLIVKDLQKEPASSRERLFQNHRVRNMIDSITSTTHKLVEIYEDKDSA 841
            TR++HEEVERLERLIVK+LQ +PAS++ERL+Q+HRVRNMID+ITSTT KL+ +YED D+A
Sbjct: 9    TRAAHEEVERLERLIVKELQNDPASNKERLYQSHRVRNMIDTITSTTEKLIGVYEDNDNA 68

Query: 840  RKDEIAALGGQSGN-TNVFGAFYDRLKEIREYHRRHPSARVIDASEDYDELLKDEPLVEF 664
            RKDEIAALGGQ+    NVF AFYDRLKEIREYHR+HP ARV+DA++DY+ LL +EP +EF
Sbjct: 69   RKDEIAALGGQTATGINVFSAFYDRLKEIREYHRKHPVARVVDANDDYETLLNEEPQIEF 128

Query: 663  SGEEGYGRYFDMHELYNEYINSKFGKLVEYSTYLDIFSQTHEIPRNLKLTGAXXXXXXXX 484
            SGEE  GRY D+HELY +Y+NSKFG+ +EYS YLD+FS T +IPR +K+T          
Sbjct: 129  SGEESLGRYLDLHELYYQYVNSKFGEPIEYSAYLDVFSDTDKIPRKMKMTRQYREYLANL 188

Query: 483  XXXLIHFFQRIEPLQDLDRFFSKVESEFEELWANGNVEGWENKGLENGHISSHEALIDLD 304
               L++FFQR EPLQDLDR  SKV +EFEE W  G V+ WEN   ENGH+ +  A IDLD
Sbjct: 189  LEYLLYFFQRTEPLQDLDRILSKVTTEFEESWVVGKVQRWENDNQENGHVLAEHAPIDLD 248

Query: 303  YYSTVEELMEVGPGKLKEALSALGLKSGGTVKERAERLFLTKHTPLEQLDKKHFLKGSCG 124
            YYST+EELMEVGP +LKEAL+ALGLK+GGTV++RAERLFLTKHTPLE+LD+KHF KG+CG
Sbjct: 249  YYSTIEELMEVGPERLKEALAALGLKTGGTVQQRAERLFLTKHTPLEKLDRKHFAKGACG 308

Query: 123  VKQNGTAAVSERTGDLKNIALMEAKLKRLCEDLLNEIIVQT 1
            V++NG AAV +  G+ K IALMEAK+ +LC  LL E I +T
Sbjct: 309  VEKNGVAAVPQEDGNSKEIALMEAKMTKLCH-LLEETIART 348


>ref|XP_004145709.1| PREDICTED: splicing factor 3A subunit 3-like [Cucumis sativus]
            gi|449507630|ref|XP_004163087.1| PREDICTED: LOW QUALITY
            PROTEIN: splicing factor 3A subunit 3-like [Cucumis
            sativus]
          Length = 508

 Score =  459 bits (1182), Expect = e-127
 Identities = 234/341 (68%), Positives = 276/341 (80%), Gaps = 1/341 (0%)
 Frame = -3

Query: 1020 TRSSHEEVERLERLIVKDLQKEPASSRERLFQNHRVRNMIDSITSTTHKLVEIYEDKDSA 841
            TRSSHEEVERLERLIVK+LQ EPAS ++RL Q+HRVR+MID+I STT KLVEIYEDKDSA
Sbjct: 9    TRSSHEEVERLERLIVKELQNEPASGKDRLLQSHRVRSMIDTIMSTTEKLVEIYEDKDSA 68

Query: 840  RKDEIAALGGQS-GNTNVFGAFYDRLKEIREYHRRHPSARVIDASEDYDELLKDEPLVEF 664
            RKDEIAALGGQ+   TNVF AFYDRLKEIREYHRRHP+ARV+D SED D LLK+EP +EF
Sbjct: 69   RKDEIAALGGQTTSGTNVFSAFYDRLKEIREYHRRHPAARVVDVSED-DGLLKEEPQIEF 127

Query: 663  SGEEGYGRYFDMHELYNEYINSKFGKLVEYSTYLDIFSQTHEIPRNLKLTGAXXXXXXXX 484
            SGEE +GRY D+HELYN+YINSKFG+ +EYS+YLD+FSQ  +I + LK +          
Sbjct: 128  SGEEAFGRYLDLHELYNQYINSKFGEAIEYSSYLDVFSQPQKISQKLKFSRQYREYLENL 187

Query: 483  XXXLIHFFQRIEPLQDLDRFFSKVESEFEELWANGNVEGWENKGLENGHISSHEALIDLD 304
               LI+FFQR EPLQDLDR FSKVESEFEE W  G +EGWEN   +NGH S+  +LIDLD
Sbjct: 188  LAYLIYFFQRTEPLQDLDRIFSKVESEFEERWVIGTIEGWENTSQDNGHDSAQHSLIDLD 247

Query: 303  YYSTVEELMEVGPGKLKEALSALGLKSGGTVKERAERLFLTKHTPLEQLDKKHFLKGSCG 124
            YYSTVEEL+E+GP +LKE L ALGLK+GGTV++RAERLFLTKHTPL+ LDKKHF K S  
Sbjct: 248  YYSTVEELVELGPERLKEGLMALGLKTGGTVQQRAERLFLTKHTPLQLLDKKHFAKLSRQ 307

Query: 123  VKQNGTAAVSERTGDLKNIALMEAKLKRLCEDLLNEIIVQT 1
              QNG+A  S+   +LK +ALMEAK+++LC DLL+E I +T
Sbjct: 308  PIQNGSAVASQNNENLKQVALMEAKIEKLC-DLLDETIART 347