BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00000939
         (248 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631423.1| PREDICTED: E3 ubiquitin-protein ligase At4g1...   155   3e-36
ref|XP_003631422.1| PREDICTED: E3 ubiquitin-protein ligase At4g1...   155   3e-36
ref|XP_003631421.1| PREDICTED: E3 ubiquitin-protein ligase At4g1...   155   3e-36
emb|CBI34726.3| unnamed protein product [Vitis vinifera]              155   3e-36
ref|XP_002509740.1| cleavage and polyadenylation specificity fac...   153   1e-35

>ref|XP_003631423.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like isoform 3
           [Vitis vinifera]
          Length = 392

 Score =  155 bits (392), Expect = 3e-36
 Identities = 65/82 (79%), Positives = 70/82 (85%)
 Frame = +1

Query: 1   GDFEKVNGEAQGPFGGIMTECDTDTPIEHVLQMENAECCICLSAYDDGAELRELPCRHHF 180
           GD EK++G+ QG  GGIMTEC TD P EHVL  E+AECCICLSAYDDG ELRELPC HHF
Sbjct: 300 GDIEKIDGDIQGACGGIMTECGTDAPTEHVLSQEDAECCICLSAYDDGVELRELPCGHHF 359

Query: 181 HCACIDKWLYINATCPLCKYNI 246
           HC C+DKWLYINATCPLCKYNI
Sbjct: 360 HCTCVDKWLYINATCPLCKYNI 381


>ref|XP_003631422.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like isoform 2
           [Vitis vinifera]
          Length = 383

 Score =  155 bits (392), Expect = 3e-36
 Identities = 65/82 (79%), Positives = 70/82 (85%)
 Frame = +1

Query: 1   GDFEKVNGEAQGPFGGIMTECDTDTPIEHVLQMENAECCICLSAYDDGAELRELPCRHHF 180
           GD EK++G+ QG  GGIMTEC TD P EHVL  E+AECCICLSAYDDG ELRELPC HHF
Sbjct: 291 GDIEKIDGDIQGACGGIMTECGTDAPTEHVLSQEDAECCICLSAYDDGVELRELPCGHHF 350

Query: 181 HCACIDKWLYINATCPLCKYNI 246
           HC C+DKWLYINATCPLCKYNI
Sbjct: 351 HCTCVDKWLYINATCPLCKYNI 372


>ref|XP_003631421.1| PREDICTED: E3 ubiquitin-protein ligase At4g11680-like isoform 1
           [Vitis vinifera]
          Length = 372

 Score =  155 bits (392), Expect = 3e-36
 Identities = 65/82 (79%), Positives = 70/82 (85%)
 Frame = +1

Query: 1   GDFEKVNGEAQGPFGGIMTECDTDTPIEHVLQMENAECCICLSAYDDGAELRELPCRHHF 180
           GD EK++G+ QG  GGIMTEC TD P EHVL  E+AECCICLSAYDDG ELRELPC HHF
Sbjct: 280 GDIEKIDGDIQGACGGIMTECGTDAPTEHVLSQEDAECCICLSAYDDGVELRELPCGHHF 339

Query: 181 HCACIDKWLYINATCPLCKYNI 246
           HC C+DKWLYINATCPLCKYNI
Sbjct: 340 HCTCVDKWLYINATCPLCKYNI 361


>emb|CBI34726.3| unnamed protein product [Vitis vinifera]
          Length = 269

 Score =  155 bits (392), Expect = 3e-36
 Identities = 65/82 (79%), Positives = 70/82 (85%)
 Frame = +1

Query: 1   GDFEKVNGEAQGPFGGIMTECDTDTPIEHVLQMENAECCICLSAYDDGAELRELPCRHHF 180
           GD EK++G+ QG  GGIMTEC TD P EHVL  E+AECCICLSAYDDG ELRELPC HHF
Sbjct: 177 GDIEKIDGDIQGACGGIMTECGTDAPTEHVLSQEDAECCICLSAYDDGVELRELPCGHHF 236

Query: 181 HCACIDKWLYINATCPLCKYNI 246
           HC C+DKWLYINATCPLCKYNI
Sbjct: 237 HCTCVDKWLYINATCPLCKYNI 258


>ref|XP_002509740.1| cleavage and polyadenylation specificity factor, putative [Ricinus
           communis] gi|223549639|gb|EEF51127.1| cleavage and
           polyadenylation specificity factor, putative [Ricinus
           communis]
          Length = 383

 Score =  153 bits (387), Expect = 1e-35
 Identities = 62/76 (81%), Positives = 69/76 (90%)
 Frame = +1

Query: 19  NGEAQGPFGGIMTECDTDTPIEHVLQMENAECCICLSAYDDGAELRELPCRHHFHCACID 198
           NG+ QGP GG+MTEC TD+P+EH+L  E+AECCICLSAYDDG ELRELPC HHFHCAC+D
Sbjct: 297 NGDEQGPLGGVMTECGTDSPVEHILSEEDAECCICLSAYDDGVELRELPCGHHFHCACVD 356

Query: 199 KWLYINATCPLCKYNI 246
           KWLYINATCPLCKYNI
Sbjct: 357 KWLYINATCPLCKYNI 372