BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis23_contig00000845
         (937 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein C...   374   e-101
ref|XP_002519950.1| chlorophyll A/B binding protein, putative [R...   370   e-100
ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [P...   368   e-99 
gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotia...   368   1e-99
ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein C...   367   2e-99

>ref|XP_002264295.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic
           [Vitis vinifera] gi|147770824|emb|CAN76428.1|
           hypothetical protein VITISV_023565 [Vitis vinifera]
           gi|297734735|emb|CBI16969.3| unnamed protein product
           [Vitis vinifera]
          Length = 290

 Score =  374 bits (960), Expect = e-101
 Identities = 186/248 (75%), Positives = 195/248 (78%), Gaps = 4/248 (1%)
 Frame = +3

Query: 204 EMLGNPLNFXXXXXXXXXXXXXXXXKIVALFSXXXXXXXXXXX----PADDELSKWYGPD 371
           EMLGNPLNF                K VALFS               PAD+EL+KWYGPD
Sbjct: 17  EMLGNPLNFSGASRTAPSASSPATFKTVALFSKKKAAPAKAKPAPVSPADEELAKWYGPD 76

Query: 372 RRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPENFSKYQAYELIHARWAMLGAA 551
           RRIFLP+GLLDRSEIP YLTGEVPGDYGYDPFGLSKKPE+F+KYQAYELIHARWAMLGAA
Sbjct: 77  RRIFLPEGLLDRSEIPAYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGAA 136

Query: 552 GFIIPEAFNKYGAVCGPEAVWFKTGALLLDGNTLSYFGNNIPINXXXXXXXXXXXXGSAE 731
           GFIIPEAFNK+GA CGPEAVWFKTGALLLDGNTL+YFG NIPIN            G AE
Sbjct: 137 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLIFAVVAEVVLVGGAE 196

Query: 732 YYRLTNSLDFEDTLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVT 911
           YYR+ N LD ED LHPGGPFDPLGLA DPDQAA+LKVKEIKNGRLAMFAMLGFFIQAYVT
Sbjct: 197 YYRIINGLDLEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFFIQAYVT 256

Query: 912 GEGPVENL 935
           GEGPVENL
Sbjct: 257 GEGPVENL 264


>ref|XP_002519950.1| chlorophyll A/B binding protein, putative [Ricinus communis]
           gi|223540996|gb|EEF42554.1| chlorophyll A/B binding
           protein, putative [Ricinus communis]
          Length = 292

 Score =  370 bits (951), Expect = e-100
 Identities = 186/250 (74%), Positives = 196/250 (78%), Gaps = 6/250 (2%)
 Frame = +3

Query: 204 EMLGNPLNFXXXXXXXXXXXXXXXX-KIVALFSXXXXXXXXXXXPA-----DDELSKWYG 365
           EMLGNPLNF                 K VALFS           PA     DDEL+KWYG
Sbjct: 17  EMLGNPLNFSGATRSAAPTSSTPSTLKTVALFSKKKAAPPPKAKPAAVSPVDDELAKWYG 76

Query: 366 PDRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPENFSKYQAYELIHARWAMLG 545
           PDRRIFLP+GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPE+F+KYQAYELIHARWAMLG
Sbjct: 77  PDRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLG 136

Query: 546 AAGFIIPEAFNKYGAVCGPEAVWFKTGALLLDGNTLSYFGNNIPINXXXXXXXXXXXXGS 725
           AAGFI+PEAFNK+GA CGPEAVWFKTGALLLDG TL+YFGN+IPIN            G 
Sbjct: 137 AAGFIVPEAFNKFGANCGPEAVWFKTGALLLDGGTLNYFGNSIPINLVVAVIAEVVLLGG 196

Query: 726 AEYYRLTNSLDFEDTLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFAMLGFFIQAY 905
           AEYYR+ N LD ED LHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFAMLGF+ QAY
Sbjct: 197 AEYYRIINGLDLEDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFAMLGFYFQAY 256

Query: 906 VTGEGPVENL 935
           VTGEGPVENL
Sbjct: 257 VTGEGPVENL 266


>ref|XP_002329192.1| light-harvesting complex II protein Lhcb5 [Populus trichocarpa]
           gi|118487642|gb|ABK95646.1| unknown [Populus
           trichocarpa] gi|222870973|gb|EEF08104.1|
           light-harvesting complex II protein Lhcb5 [Populus
           trichocarpa]
          Length = 290

 Score =  368 bits (945), Expect = e-99
 Identities = 185/248 (74%), Positives = 195/248 (78%), Gaps = 4/248 (1%)
 Frame = +3

Query: 204 EMLGNPLNFXXXXXXXXXXXXXXXX-KIVALFSXXXXXXXXXXX---PADDELSKWYGPD 371
           EMLGNPLNF                 K VALFS              PAD EL+KWYGPD
Sbjct: 17  EMLGNPLNFSGATRSASPAASTPATFKTVALFSKKKPAPKPKPSAVSPADVELAKWYGPD 76

Query: 372 RRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPENFSKYQAYELIHARWAMLGAA 551
           RRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKP++F KYQA+ELIHARWAMLGAA
Sbjct: 77  RRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPDDFEKYQAFELIHARWAMLGAA 136

Query: 552 GFIIPEAFNKYGAVCGPEAVWFKTGALLLDGNTLSYFGNNIPINXXXXXXXXXXXXGSAE 731
           GFIIPEAFNK+GA CGPEAVWFKTGALLLDGNTL+YFG NIPIN            G AE
Sbjct: 137 GFIIPEAFNKFGANCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVLAVVAEVILVGGAE 196

Query: 732 YYRLTNSLDFEDTLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYVT 911
           Y+R+TN L F+D LHPGGPFDPLGLAKDPDQAA+LKVKEIKNGRLAMFAMLGFF QAYVT
Sbjct: 197 YFRITNGLGFDDKLHPGGPFDPLGLAKDPDQAALLKVKEIKNGRLAMFAMLGFFFQAYVT 256

Query: 912 GEGPVENL 935
           GEGPVENL
Sbjct: 257 GEGPVENL 264


>gb|ABG73417.1| chloroplast pigment-binding protein CP26 [Nicotiana tabacum]
          Length = 285

 Score =  368 bits (944), Expect = 1e-99
 Identities = 184/249 (73%), Positives = 196/249 (78%), Gaps = 5/249 (2%)
 Frame = +3

Query: 204 EMLGNPLNFXXXXXXXXXXXXXXXX-KIVALF----SXXXXXXXXXXXPADDELSKWYGP 368
           EMLG+P+ F                 K VALF    +           PAD+EL+KWYGP
Sbjct: 11  EMLGSPVKFSGVARPAAPTPSSPATFKTVALFKKKAAAAPAKKAVAIAPADEELAKWYGP 70

Query: 369 DRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPENFSKYQAYELIHARWAMLGA 548
           DRRIFLPDGLLDRSEIPEYL GEVPGDYGYDPFGLSKKPE+F+KYQAYELIHARWAMLGA
Sbjct: 71  DRRIFLPDGLLDRSEIPEYLNGEVPGDYGYDPFGLSKKPEDFAKYQAYELIHARWAMLGA 130

Query: 549 AGFIIPEAFNKYGAVCGPEAVWFKTGALLLDGNTLSYFGNNIPINXXXXXXXXXXXXGSA 728
           AGF+IPEAFNK+GA CGPEAVWFKTGALLLDGNTL+YFG NIPIN            G A
Sbjct: 131 AGFVIPEAFNKFGADCGPEAVWFKTGALLLDGNTLNYFGKNIPINLVVAVVAEVVLLGGA 190

Query: 729 EYYRLTNSLDFEDTLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYV 908
           EYYR+TN LD ED LHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYV
Sbjct: 191 EYYRITNGLDLEDKLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYV 250

Query: 909 TGEGPVENL 935
           TG+GPVENL
Sbjct: 251 TGKGPVENL 259


>ref|XP_003534048.1| PREDICTED: chlorophyll a-b binding protein CP26, chloroplastic-like
           [Glycine max]
          Length = 291

 Score =  367 bits (942), Expect = 2e-99
 Identities = 182/249 (73%), Positives = 194/249 (77%), Gaps = 5/249 (2%)
 Frame = +3

Query: 204 EMLGNPLNFXXXXXXXXXXXXXXXXKIVALFSXXXXXXXXXXX-----PADDELSKWYGP 368
           EMLGNP+NF                K VALFS                PA+DEL+KWYGP
Sbjct: 17  EMLGNPINFSGATRPAPSASSPASFKTVALFSKKKATPTPPKKAAAAAPANDELAKWYGP 76

Query: 369 DRRIFLPDGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPENFSKYQAYELIHARWAMLGA 548
           DRRIFLP+GLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPE+F+KYQA+ELIHARWAMLGA
Sbjct: 77  DRRIFLPEGLLDRSEIPEYLTGEVPGDYGYDPFGLSKKPEDFAKYQAFELIHARWAMLGA 136

Query: 549 AGFIIPEAFNKYGAVCGPEAVWFKTGALLLDGNTLSYFGNNIPINXXXXXXXXXXXXGSA 728
           AGFIIPEAFNKYGA CGPEAVWFKTGALLLDG TL+YFG  IPIN            G A
Sbjct: 137 AGFIIPEAFNKYGANCGPEAVWFKTGALLLDGGTLNYFGKPIPINLIVAVIAEIVLVGGA 196

Query: 729 EYYRLTNSLDFEDTLHPGGPFDPLGLAKDPDQAAILKVKEIKNGRLAMFAMLGFFIQAYV 908
           EYYR+ N L+FED LHPGGPFDPLGLA DPDQAA+LKVKEIKNGRLAMFAMLGF+ QAYV
Sbjct: 197 EYYRIINGLNFEDKLHPGGPFDPLGLANDPDQAALLKVKEIKNGRLAMFAMLGFYFQAYV 256

Query: 909 TGEGPVENL 935
           TGEGPVENL
Sbjct: 257 TGEGPVENL 265