BLASTX nr result
ID: Coptis23_contig00000825
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00000825
(817 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containi... 253 5e-65
emb|CBI15839.3| unnamed protein product [Vitis vinifera] 253 5e-65
emb|CBI28140.3| unnamed protein product [Vitis vinifera] 252 8e-65
ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containi... 252 8e-65
ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containi... 247 3e-63
>ref|XP_003632122.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like
[Vitis vinifera]
Length = 577
Score = 253 bits (645), Expect = 5e-65
Identities = 125/270 (46%), Positives = 182/270 (67%), Gaps = 4/270 (1%)
Frame = +2
Query: 2 SRLGVLSLGKWVHAYVERMGLELTVYIGTALIDMYCKCGSVDDALGVFSLMEKKSVRCWN 181
+ LG L +G+W+H Y+ L++ V +G ALIDMYCKCG+++ A+ VF + +K++ CWN
Sbjct: 216 AHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWN 275
Query: 182 AMLHGLSVNGRGEEALSLFLEMEMDGGVHPNDVTFVGVLCGCSHSGLVEEGRFYFNLMKR 361
+++ GL +NGRGEEA++ F+ ME +G + P+ VTFVG+L GCSHSGL+ G+ YF+ M
Sbjct: 276 SIIVGLGMNGRGEEAIAAFIVMEKEG-IKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLG 334
Query: 362 KYGIEPNVKHYGCMVDLLGRAGLVDEAFEMVTRMRVPPNAVVLGSLLSACRDQNNLKVAE 541
YG+EP V+HYGCMVDLLGRAG + EA E++ M + PN++VLGSLL AC+ + K+ E
Sbjct: 335 VYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGE 394
Query: 542 RVTQMIIEIGDDSVLGDTSHYVIMSNMYAQVGLKDKMAEAR---IKIG-KKPKGWSWIEI 709
+VTQ ++E+ D +YV +SN+YA + D + R IK G K G S IE+
Sbjct: 395 QVTQQLLELDP----CDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEV 450
Query: 710 GGGVHQFSVGDASHPMWGKIREMLDEVVRK 799
VH+F GD SHP + +I LDE+ ++
Sbjct: 451 NNIVHEFVAGDTSHPQFTQINAFLDEIAKE 480
>emb|CBI15839.3| unnamed protein product [Vitis vinifera]
Length = 505
Score = 253 bits (645), Expect = 5e-65
Identities = 125/270 (46%), Positives = 182/270 (67%), Gaps = 4/270 (1%)
Frame = +2
Query: 2 SRLGVLSLGKWVHAYVERMGLELTVYIGTALIDMYCKCGSVDDALGVFSLMEKKSVRCWN 181
+ LG L +G+W+H Y+ L++ V +G ALIDMYCKCG+++ A+ VF + +K++ CWN
Sbjct: 144 AHLGALDMGEWIHGYIRTKRLKIDVVLGNALIDMYCKCGALEAAIDVFHGLSRKNIFCWN 203
Query: 182 AMLHGLSVNGRGEEALSLFLEMEMDGGVHPNDVTFVGVLCGCSHSGLVEEGRFYFNLMKR 361
+++ GL +NGRGEEA++ F+ ME +G + P+ VTFVG+L GCSHSGL+ G+ YF+ M
Sbjct: 204 SIIVGLGMNGRGEEAIAAFIVMEKEG-IKPDGVTFVGILSGCSHSGLLSAGQRYFSEMLG 262
Query: 362 KYGIEPNVKHYGCMVDLLGRAGLVDEAFEMVTRMRVPPNAVVLGSLLSACRDQNNLKVAE 541
YG+EP V+HYGCMVDLLGRAG + EA E++ M + PN++VLGSLL AC+ + K+ E
Sbjct: 263 VYGLEPGVEHYGCMVDLLGRAGYLKEALELIRAMPMKPNSMVLGSLLRACQIHKDTKLGE 322
Query: 542 RVTQMIIEIGDDSVLGDTSHYVIMSNMYAQVGLKDKMAEAR---IKIG-KKPKGWSWIEI 709
+VTQ ++E+ D +YV +SN+YA + D + R IK G K G S IE+
Sbjct: 323 QVTQQLLELDP----CDGGNYVFLSNLYASLSRWDDVNTCRKLMIKRGVHKTPGCSSIEV 378
Query: 710 GGGVHQFSVGDASHPMWGKIREMLDEVVRK 799
VH+F GD SHP + +I LDE+ ++
Sbjct: 379 NNIVHEFVAGDTSHPQFTQINAFLDEIAKE 408
Score = 69.7 bits (169), Expect = 7e-10
Identities = 40/149 (26%), Positives = 77/149 (51%), Gaps = 2/149 (1%)
Frame = +2
Query: 11 GVLSLGKWVHAYVERMGLELTVYIGTALIDMYCKCGSVDDALGVFSLMEKKSVR--CWNA 184
G LG+ H + +MG E + + T L+D Y K G V++A +F M +++ WN
Sbjct: 44 GEAQLGEAFHCQIMKMGFEYDMILQTGLLDFYAKHGYVEEARNLFDNMTERNSNSVTWNT 103
Query: 185 MLHGLSVNGRGEEALSLFLEMEMDGGVHPNDVTFVGVLCGCSHSGLVEEGRFYFNLMKRK 364
M+ G A+S+F +M+ + V P +VT V +L C+H G ++ G + ++ K
Sbjct: 104 MISAYVQCGEFGTAISMFQQMQSE-NVKPTEVTMVSLLSACAHLGALDMGEWIHGYIRTK 162
Query: 365 YGIEPNVKHYGCMVDLLGRAGLVDEAFEM 451
++ +V ++D+ + G ++ A ++
Sbjct: 163 -RLKIDVVLGNALIDMYCKCGALEAAIDV 190
>emb|CBI28140.3| unnamed protein product [Vitis vinifera]
Length = 580
Score = 252 bits (643), Expect = 8e-65
Identities = 133/273 (48%), Positives = 183/273 (67%), Gaps = 7/273 (2%)
Frame = +2
Query: 2 SRLGVLSLGKWVHAYVERMGLELTVYIGTALIDMYCKCGSVDDALGVFSLMEKKSVRCWN 181
+ LG L LGKW+H Y+E+ +E+ V +GTAL+DMY KCGS++ A+ VF M +K V W
Sbjct: 219 THLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWT 278
Query: 182 AMLHGLSVNGRGEEALSLFLEMEMDGGVHPNDVTFVGVLCGCSHSGLVEEGRFYFNLMKR 361
A++ GL++ G+G +AL LF EM+M V P+ +TFVGVL CSH+GLV EG YFN M
Sbjct: 279 ALIVGLAMCGQGLKALELFHEMQMSE-VKPDAITFVGVLAACSHAGLVNEGIAYFNSMPN 337
Query: 362 KYGIEPNVKHYGCMVDLLGRAGLVDEAFEMVTRMRVPPNAVVLGSLLSACRDQNNLKVAE 541
KYGI+P+++HYGCMVD+LGRAG + EA +++ M + P+ VL LLSACR NL VAE
Sbjct: 338 KYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAE 397
Query: 542 RVTQMIIEIGDDSVLGDTSHYVIMSNMYAQV-------GLKDKMAEARIKIGKKPKGWSW 700
R Q +IE+ D G T YV++SN+Y+ + +++ M E I KKP G S
Sbjct: 398 RAAQQLIEL--DPKNGGT--YVLLSNIYSSMKNWEAAKKMRELMVERNI---KKPPGCSA 450
Query: 701 IEIGGGVHQFSVGDASHPMWGKIREMLDEVVRK 799
IE+GG VH+F GD SHP +I E LD+++R+
Sbjct: 451 IEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRR 483
Score = 75.5 bits (184), Expect = 1e-11
Identities = 54/183 (29%), Positives = 81/183 (44%), Gaps = 32/183 (17%)
Frame = +2
Query: 11 GVLSLGKWVHAYVERMGLELTVYIGTALIDMYCKCGSVDDALGVFSLMEKKSV------- 169
GVL GK +H + ++G YI L++MY CG + A VF M KSV
Sbjct: 89 GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMI 148
Query: 170 -------------------------RCWNAMLHGLSVNGRGEEALSLFLEMEMDGGVHPN 274
CWN M++G + EEALSLF EM++ GV +
Sbjct: 149 GAYAQWDLPHEAIKLFRRMEIASNLFCWNIMINGHVEDSDYEEALSLFNEMQL-SGVKGD 207
Query: 275 DVTFVGVLCGCSHSGLVEEGRFYFNLMKRKYGIEPNVKHYGCMVDLLGRAGLVDEAFEMV 454
VT +L C+H G +E G+ + ++ K IE +V +VD+ + G ++ A +
Sbjct: 208 KVTMASLLIACTHLGALELGK-WLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVF 266
Query: 455 TRM 463
M
Sbjct: 267 QEM 269
>ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic [Vitis vinifera]
Length = 711
Score = 252 bits (643), Expect = 8e-65
Identities = 133/273 (48%), Positives = 183/273 (67%), Gaps = 7/273 (2%)
Frame = +2
Query: 2 SRLGVLSLGKWVHAYVERMGLELTVYIGTALIDMYCKCGSVDDALGVFSLMEKKSVRCWN 181
+ LG L LGKW+H Y+E+ +E+ V +GTAL+DMY KCGS++ A+ VF M +K V W
Sbjct: 350 THLGALELGKWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWT 409
Query: 182 AMLHGLSVNGRGEEALSLFLEMEMDGGVHPNDVTFVGVLCGCSHSGLVEEGRFYFNLMKR 361
A++ GL++ G+G +AL LF EM+M V P+ +TFVGVL CSH+GLV EG YFN M
Sbjct: 410 ALIVGLAMCGQGLKALELFHEMQMSE-VKPDAITFVGVLAACSHAGLVNEGIAYFNSMPN 468
Query: 362 KYGIEPNVKHYGCMVDLLGRAGLVDEAFEMVTRMRVPPNAVVLGSLLSACRDQNNLKVAE 541
KYGI+P+++HYGCMVD+LGRAG + EA +++ M + P+ VL LLSACR NL VAE
Sbjct: 469 KYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAE 528
Query: 542 RVTQMIIEIGDDSVLGDTSHYVIMSNMYAQV-------GLKDKMAEARIKIGKKPKGWSW 700
R Q +IE+ D G T YV++SN+Y+ + +++ M E I KKP G S
Sbjct: 529 RAAQQLIEL--DPKNGGT--YVLLSNIYSSMKNWEAAKKMRELMVERNI---KKPPGCSA 581
Query: 701 IEIGGGVHQFSVGDASHPMWGKIREMLDEVVRK 799
IE+GG VH+F GD SHP +I E LD+++R+
Sbjct: 582 IEVGGVVHEFVKGDVSHPQSSEIYETLDDMMRR 614
Score = 92.4 bits (228), Expect = 1e-16
Identities = 51/149 (34%), Positives = 83/149 (55%)
Frame = +2
Query: 17 LSLGKWVHAYVERMGLELTVYIGTALIDMYCKCGSVDDALGVFSLMEKKSVRCWNAMLHG 196
L K VH Y++ G+ + +AL+D+YCKCG A +F+ M +K++ CWN M++G
Sbjct: 254 LETAKQVHKYIDETGIGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMING 313
Query: 197 LSVNGRGEEALSLFLEMEMDGGVHPNDVTFVGVLCGCSHSGLVEEGRFYFNLMKRKYGIE 376
+ EEALSLF EM++ GV + VT +L C+H G +E G+ + ++ K IE
Sbjct: 314 HVEDSDYEEALSLFNEMQL-SGVKGDKVTMASLLIACTHLGALELGK-WLHVYIEKEKIE 371
Query: 377 PNVKHYGCMVDLLGRAGLVDEAFEMVTRM 463
+V +VD+ + G ++ A + M
Sbjct: 372 VDVALGTALVDMYAKCGSIESAMRVFQEM 400
Score = 67.8 bits (164), Expect = 3e-09
Identities = 39/109 (35%), Positives = 55/109 (50%)
Frame = +2
Query: 11 GVLSLGKWVHAYVERMGLELTVYIGTALIDMYCKCGSVDDALGVFSLMEKKSVRCWNAML 190
GVL GK +H + ++G YI L++MY CG + A VF M KSV W M+
Sbjct: 151 GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMI 210
Query: 191 HGLSVNGRGEEALSLFLEMEMDGGVHPNDVTFVGVLCGCSHSGLVEEGR 337
+ EA+ LF ME+ V PN++T V VL C+ S +E +
Sbjct: 211 GAYAQWDLPHEAIKLFRRMEI-ASVKPNEITLVNVLTACARSRDLETAK 258
>ref|XP_002279360.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
chloroplastic-like [Vitis vinifera]
Length = 743
Score = 247 bits (630), Expect = 3e-63
Identities = 125/270 (46%), Positives = 181/270 (67%), Gaps = 4/270 (1%)
Frame = +2
Query: 2 SRLGVLSLGKWVHAYVERMGLELTVYIGTALIDMYCKCGSVDDALGVFSLMEKKSVRCWN 181
++LG + LG W+H Y+++ G++L ++ T+LIDMYCKCG + AL VF +E+K V W+
Sbjct: 381 AQLGAMDLGGWIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERKDVFVWS 440
Query: 182 AMLHGLSVNGRGEEALSLFLEMEMDGGVHPNDVTFVGVLCGCSHSGLVEEGRFYFNLMKR 361
AM+ GL+++G G++A++LF +M+ D V PN VTF +LC CSH GLVEEGR +FN M+
Sbjct: 441 AMIAGLAMHGHGKDAIALFSKMQEDK-VKPNAVTFTNILCACSHVGLVEEGRTFFNQMEL 499
Query: 362 KYGIEPNVKHYGCMVDLLGRAGLVDEAFEMVTRMRVPPNAVVLGSLLSACRDQNNLKVAE 541
YG+ P VKHY CMVD+LGRAGL++EA E++ +M + P A V G+LL AC N+ +AE
Sbjct: 500 VYGVLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVWGALLGACTIHENVVLAE 559
Query: 542 RVTQMIIEIGDDSVLGDTSHYVIMSNMYAQVGLKDKMAEARIKIG----KKPKGWSWIEI 709
+ +IE+ G+ YV++SN+YA+ G D+++ R + KK G S IE+
Sbjct: 560 QACSQLIELEP----GNHGAYVLLSNIYAKAGKWDRVSGLRKLMRDVGLKKEPGCSSIEV 615
Query: 710 GGGVHQFSVGDASHPMWGKIREMLDEVVRK 799
G VH+F VGD SHP KI LDE+V +
Sbjct: 616 DGIVHEFLVGDNSHPSAKKIYAKLDEIVAR 645
Score = 89.4 bits (220), Expect = 9e-16
Identities = 68/291 (23%), Positives = 118/291 (40%), Gaps = 66/291 (22%)
Frame = +2
Query: 26 GKWVHAYVERMGLELTVYIGTALIDMYCKCGSVDD------------------------- 130
G+WVH+Y+ER + ++ + A++DMY KCGSV+D
Sbjct: 256 GRWVHSYIERNRIGESLTLSNAMLDMYTKCGSVEDAKRLFDKMPEKDIVSWTTMLVGYAK 315
Query: 131 ------ALGVFSLMEKKSVRCWNAMLHGLSVNGRGEEALSLFLEMEMDGGVHPNDVTFVG 292
A G+F M + + WNA++ G+ +EAL LF E+++ P++VT V
Sbjct: 316 IGEYDAAQGIFDAMPNQDIAAWNALISAYEQCGKPKEALELFHELQLSKTAKPDEVTLVS 375
Query: 293 VLCGCSHSGLVEEGRFYFNLMKRKYGIEPNVKHYGCMVDLLGRAGLVDEA---------- 442
L C+ G ++ G + ++ +K G++ N ++D+ + G + +A
Sbjct: 376 TLSACAQLGAMDLGG-WIHVYIKKQGMKLNCHLTTSLIDMYCKCGDLQKALMVFHSVERK 434
Query: 443 ------------------------FEMVTRMRVPPNAVVLGSLLSACRDQNNLKVAER-V 547
F + +V PNAV ++L AC ++
Sbjct: 435 DVFVWSAMIAGLAMHGHGKDAIALFSKMQEDKVKPNAVTFTNILCACSHVGLVEEGRTFF 494
Query: 548 TQMIIEIGDDSVLGDTSHYVIMSNMYAQVGLKDKMAEARIKIGKKPKGWSW 700
QM + G VL HY M ++ + GL ++ E K+ P W
Sbjct: 495 NQMELVYG---VLPGVKHYACMVDILGRAGLLEEAVELIEKMPMAPAASVW 542
Score = 77.4 bits (189), Expect = 4e-12
Identities = 52/154 (33%), Positives = 77/154 (50%)
Frame = +2
Query: 2 SRLGVLSLGKWVHAYVERMGLELTVYIGTALIDMYCKCGSVDDALGVFSLMEKKSVRCWN 181
S L L GK H V ++ L V+I +LI Y KCG + VF + ++ V WN
Sbjct: 147 SELEELFTGKAFHGMVIKVLLGSDVFILNSLIHFYAKCGELGLGYRVFVNIPRRDVVSWN 206
Query: 182 AMLHGLSVNGRGEEALSLFLEMEMDGGVHPNDVTFVGVLCGCSHSGLVEEGRFYFNLMKR 361
+M+ G EEAL LF EME V PN +T VGVL C+ E GR+ + ++R
Sbjct: 207 SMITAFVQGGCPEEALELFQEMETQ-NVKPNGITMVGVLSACAKKSDFEFGRWVHSYIER 265
Query: 362 KYGIEPNVKHYGCMVDLLGRAGLVDEAFEMVTRM 463
I ++ M+D+ + G V++A + +M
Sbjct: 266 N-RIGESLTLSNAMLDMYTKCGSVEDAKRLFDKM 298