BLASTX nr result
ID: Coptis23_contig00000792
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis23_contig00000792
(593 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_004144540.1| PREDICTED: protein DGCR14 homolog [Cucumis s... 84 7e-29
ref|XP_004164059.1| PREDICTED: protein DGCR14 homolog, partial [... 84 7e-29
ref|XP_002533868.1| protein with unknown function [Ricinus commu... 80 1e-27
ref|NP_187436.1| protein DGCR14 [Arabidopsis thaliana] gi|646696... 81 1e-27
ref|XP_002882551.1| hypothetical protein ARALYDRAFT_478116 [Arab... 82 2e-27
>ref|XP_004144540.1| PREDICTED: protein DGCR14 homolog [Cucumis sativus]
Length = 509
Score = 84.3 bits (207), Expect(2) = 7e-29
Identities = 53/112 (47%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Frame = -3
Query: 321 DPMIIKDAQLKILERRGGKTLRTNAEAHSKTPGTQSNYVNLLTTPFD-----FDKTPQXX 157
DP++I+DAQLKI+ERRG K R N + S+TPG S ++ T PFD KTP
Sbjct: 85 DPILIRDAQLKIMERRGQKVKRLNPDGKSQTPG--STFMRSFT-PFDEFEGKTPKTPGFG 141
Query: 156 XXXXXXXXXXXXXXXXXXXGSYSLDEFCRRYTSEDNDSFSKILEKVNRKKRE 1
S SLDEF R+YTSEDN SFSKILEK NRK++E
Sbjct: 142 GSGVVGVTEEGGSDGKVVDESLSLDEFFRQYTSEDNFSFSKILEKDNRKRKE 193
Score = 68.6 bits (166), Expect(2) = 7e-29
Identities = 32/54 (59%), Positives = 42/54 (77%)
Frame = -2
Query: 589 SSSSIFLPTSKKRQAHVLDEETYGDAMGYIIERDFFPDLPKLRDRLDWLVAVKT 428
SSSSI P S ++ VLDE++Y +A+ IIERD+FPD+ KLRDRLDWL A+K+
Sbjct: 30 SSSSITTPQSSRKHPKVLDEDSYVEAIEKIIERDYFPDISKLRDRLDWLEAIKS 83
>ref|XP_004164059.1| PREDICTED: protein DGCR14 homolog, partial [Cucumis sativus]
Length = 410
Score = 84.3 bits (207), Expect(2) = 7e-29
Identities = 53/112 (47%), Positives = 64/112 (57%), Gaps = 5/112 (4%)
Frame = -3
Query: 321 DPMIIKDAQLKILERRGGKTLRTNAEAHSKTPGTQSNYVNLLTTPFD-----FDKTPQXX 157
DP++I+DAQLKI+ERRG K R N + S+TPG S ++ T PFD KTP
Sbjct: 85 DPILIRDAQLKIMERRGQKVKRLNPDGKSQTPG--STFMRSFT-PFDEFEGKTPKTPGFG 141
Query: 156 XXXXXXXXXXXXXXXXXXXGSYSLDEFCRRYTSEDNDSFSKILEKVNRKKRE 1
S SLDEF R+YTSEDN SFSKILEK NRK++E
Sbjct: 142 GSGVVGVTEEGGSDGKVVDESLSLDEFFRQYTSEDNFSFSKILEKDNRKRKE 193
Score = 68.6 bits (166), Expect(2) = 7e-29
Identities = 32/54 (59%), Positives = 42/54 (77%)
Frame = -2
Query: 589 SSSSIFLPTSKKRQAHVLDEETYGDAMGYIIERDFFPDLPKLRDRLDWLVAVKT 428
SSSSI P S ++ VLDE++Y +A+ IIERD+FPD+ KLRDRLDWL A+K+
Sbjct: 30 SSSSITTPQSSRKHPKVLDEDSYVEAIEKIIERDYFPDISKLRDRLDWLEAIKS 83
>ref|XP_002533868.1| protein with unknown function [Ricinus communis]
gi|223526190|gb|EEF28518.1| protein with unknown
function [Ricinus communis]
Length = 519
Score = 80.1 bits (196), Expect(2) = 1e-27
Identities = 54/122 (44%), Positives = 70/122 (57%), Gaps = 14/122 (11%)
Frame = -3
Query: 324 GDPMIIKDAQLKILERRGGKTLRTNAE--------AHSKTPGTQSNYVNLLTTPFD-FD- 175
GDP+ I+DAQLKI+ERRG + +N++ + ++TPG S ++ L PFD FD
Sbjct: 86 GDPIQIRDAQLKIIERRGKRVNSSNSDGSTQTRNRSQTQTPG--STFMRNLN-PFDEFDI 142
Query: 174 ----KTPQXXXXXXXXXXXXXXXXXXXXXGSYSLDEFCRRYTSEDNDSFSKILEKVNRKK 7
KTP+ SLDEF RRYTSEDN+SFSKILEKVNRK+
Sbjct: 143 INSNKTPRMDMFGDKEKSDNNDEADDAVDEFLSLDEFFRRYTSEDNESFSKILEKVNRKR 202
Query: 6 RE 1
+E
Sbjct: 203 KE 204
Score = 68.9 bits (167), Expect(2) = 1e-27
Identities = 33/55 (60%), Positives = 42/55 (76%)
Frame = -2
Query: 592 NSSSSIFLPTSKKRQAHVLDEETYGDAMGYIIERDFFPDLPKLRDRLDWLVAVKT 428
N S+ P++ +++A VLDE+TY A+ IIERDFFPD+ KLRDRLDWL AVKT
Sbjct: 31 NKSTITTTPSNHRKRARVLDEDTYVAAIEKIIERDFFPDISKLRDRLDWLEAVKT 85
>ref|NP_187436.1| protein DGCR14 [Arabidopsis thaliana]
gi|6466961|gb|AAF13096.1|AC009176_23 hypothetical
protein [Arabidopsis thaliana]
gi|6648191|gb|AAF21189.1|AC013483_13 hypothetical
protein [Arabidopsis thaliana]
gi|332641083|gb|AEE74604.1| protein DGCR14 [Arabidopsis
thaliana]
Length = 508
Score = 80.9 bits (198), Expect(2) = 1e-27
Identities = 49/111 (44%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
Frame = -3
Query: 321 DPMIIKDAQLKILERRGGKTLRTNAEAHSKTPGTQSNYVNLLTTPFDFD----KTPQXXX 154
DP+ I+DAQLKI+ERRG K + KT S ++ T +FD +TP
Sbjct: 86 DPIQIRDAQLKIIERRGKKANHHVGDTEGKTQTPGSTFLRNFTPLDEFDGKTPRTPGVSG 145
Query: 153 XXXXXXXXXXXXXXXXXXGSYSLDEFCRRYTSEDNDSFSKILEKVNRKKRE 1
+ SLDEF RRYTSEDN+SFSKILEKVNRKK+E
Sbjct: 146 REFHGVEVDAGDGDEDIDLNLSLDEFFRRYTSEDNESFSKILEKVNRKKKE 196
Score = 67.8 bits (164), Expect(2) = 1e-27
Identities = 31/54 (57%), Positives = 42/54 (77%)
Frame = -2
Query: 589 SSSSIFLPTSKKRQAHVLDEETYGDAMGYIIERDFFPDLPKLRDRLDWLVAVKT 428
SSSS +P + +++ VLDE+ Y +A+ IIERD+FPD+ KLRDRLDW+ AVKT
Sbjct: 31 SSSSEIIPRNPRKRMRVLDEDAYVEAIEKIIERDYFPDITKLRDRLDWIQAVKT 84
>ref|XP_002882551.1| hypothetical protein ARALYDRAFT_478116 [Arabidopsis lyrata subsp.
lyrata] gi|297328391|gb|EFH58810.1| hypothetical protein
ARALYDRAFT_478116 [Arabidopsis lyrata subsp. lyrata]
Length = 503
Score = 82.4 bits (202), Expect(2) = 2e-27
Identities = 50/111 (45%), Positives = 60/111 (54%), Gaps = 4/111 (3%)
Frame = -3
Query: 321 DPMIIKDAQLKILERRGGKTLRTNAEAHSKTPGTQSNYVNLLTTPFDFD----KTPQXXX 154
DP+ I+DAQLKI+ERRG K + KT S ++ T +FD +TP
Sbjct: 86 DPIQIRDAQLKIIERRGKKANHHVGDTEGKTQTPGSTFLRNFTPLDEFDGKTPRTPGVSG 145
Query: 153 XXXXXXXXXXXXXXXXXXGSYSLDEFCRRYTSEDNDSFSKILEKVNRKKRE 1
+ SLDEF RRYTSEDNDSFSKILEKVNRKK+E
Sbjct: 146 REFHGGEVDADAGDGDIDLNLSLDEFFRRYTSEDNDSFSKILEKVNRKKKE 196
Score = 65.5 bits (158), Expect(2) = 2e-27
Identities = 30/54 (55%), Positives = 41/54 (75%)
Frame = -2
Query: 589 SSSSIFLPTSKKRQAHVLDEETYGDAMGYIIERDFFPDLPKLRDRLDWLVAVKT 428
SS S +P + +++ VLDE+ Y +A+ IIERD+FPD+ KLRDRLDW+ AVKT
Sbjct: 31 SSFSEIIPRNPRKRMRVLDEDAYVEAIEKIIERDYFPDITKLRDRLDWIQAVKT 84